Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lolium_20perenne_20[genbank_20GCA_5F001735685.1_202016-09-20] 666,180 sequences; 481,479,386 total letters Query= AAMG01002207.1 Length=564 Score E Sequences producing significant alignments: (Bits) Value seq179829 149 2e-33 seq359013 125 2e-26 seq36521 89.7 2e-15 seq329789 80.6 9e-13 seq505876 77.0 1e-11 >seq179829 Length=755 Score = 149 bits (164), Expect = 2e-33 Identities = 334/487 (69%), Gaps = 26/487 (5%) Strand=Plus/Plus Query 85 CGCCTCCGTTACATTTTGGGAGGGCAACCGCCCCAGTTAAACTACCCACCAGGCACTGTC 144 |||||||||||| |||||||||| | || |||||| ||||| | ||| | |||||| Sbjct 3 CGCCTCCGTTACCTTTTGGGAGGCCTAC-GCCCCATAGAAACTGTCTACCTGAGACTGTC 61 Query 145 CCCAACCCAGA---TCATGGGCCAAGGTTAGATATCC-ACTACGGTCAGAGTGGTATTTC 200 || || | || || |||||||||| |||| | | ||||||||||| || Sbjct 62 CCTTGGCCCGCGGGTC-TGACACAAGGTTAGA-ATCCGAGCTCTTCCAGAGTGGTATCTC 119 Query 201 AACAACGACTC---CACAACCACTAGCGTGGCCGCATCATAGTCTCCCACCTATCCTACA 257 | | | ||| | | || || | |||| || | | || ||||||| || | Sbjct 120 ACTGATGGCTCGGGCCCCCCCGGAAGGG-GGCCT--TCTTCGCCTTCCACCTAAGCTGCG 176 Query 258 CA--AACCGCACCGAATGCCAATACCAAGCTATAGTGAAGGTCCCG-GGGTCTTTTCGTC 314 || || || | || |||||| ||| | | ||| ||| | | |||||||| ||| Sbjct 177 CAGGAAAGGCCC--AAAGCCAATCCCAGGGAACAGTAAAGCTTCATAGGGTCTTTCTGTC 234 Query 315 CTGCCGCGCGAAACGAGCATCTTTACTCGTACTGCAATTTCACCGGGCCTGTGGTTGAGA 374 | | || | | ||||||| || | | ||||||||| |||| | |||| Sbjct 235 CAGGTGCAGGTAGTCCGCATCTTCACAGACATGTCTATTTCACCGAGCCTCTCTCCGAGA 294 Query 375 CAGCAGGGGAG-TCGTTACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCG 433 ||| | || |||||||||| ||||||| ||||||||||||||||||||||||||||| Sbjct 295 CAGT-GCCCAGATCGTTACGCCTTTCGTGCGGGTCGGAACTTACCCGACAAGGAATTTCG 353 Query 434 CTACCTTAGGATGGTTATAGTTACCACCGCCGTTTACTGGGGCTTCAATTACCCGCCTCA 493 ||||||||||| ||||||||||| |||||||| || |||||||| | || || | Sbjct 354 CTACCTTAGGACCGTTATAGTTACGGCCGCCGTTCACCGGGGCTTCGGTCGCCGGCTT-- 411 Query 494 CACACCACGTGGTGTGCTCACGAGTCCTCTTAACCTTCCAGCACCGGGCAGGCGTCAGTC 553 || || | | |||| | ||| ||||||| |||| ||||||||||||| | Sbjct 412 ----CCCTGTCATCAGTTCACCAACTTCCTTGACCTTCCGGCACTGGGCAGGCGTCAGCC 467 Query 554 CGTATAC 560 | |||| Sbjct 468 CCCATAC 474 >seq359013 Length=443 Score = 125 bits (138), Expect = 2e-26 Identities = 134/181 (74%), Gaps = 16/181 (9%) Strand=Plus/Plus Query 384 AGTCGTTACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGG 443 ||||||||| ||||||||||| |||| ||||| ||||||||||||||||||||||||| Sbjct 3 AGTCGTTACACCATTCGTGCATGTCGCTACTTATGCGACAAGGAATTTCGCTACCTTAGG 62 Query 444 ATGGTTATAGTTACCACCGCCGTTTACTGGGGCTTCAATTACCCGCCTCACACACCACGT 503 | |||| |||||| ||||||||||| |||||||| ||| || | ||||| | Sbjct 63 ACAGTTAGAGTTACTGCCGCCGTTTACCGGGGCTTCCATTCAAAGCTTATCACACTTC-- 120 Query 504 GGTGTGCTCACGAGTCCTCTTAACCTTCCAGCACCGGGCAGGCGTCAGTCCGTATACCTC 563 |||| |||||||||||||||||||| ||||| | ||||| || Sbjct 121 --------------TCCTTCCGACCTTCCAGCACCGGGCAGGTGTCAGACTCTATACATC 166 Query 564 G 564 | Sbjct 167 G 167 >seq36521 Length=2020 Score = 89.7 bits (98), Expect = 2e-15 Identities = 64/74 (86%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 405 GGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGATGGTTATAGTTACCACCGCC 464 |||||||||||||| ||||||||||||| ||||||||||| |||||||||| || || Sbjct 1619 GGTCGGAACTTACCTGACAAGGAATTTCTCTACCTTAGGACCATTATAGTTACGGCCACC 1678 Query 465 GTTTACTGGGGCTT 478 ||| || ||||||| Sbjct 1679 GTTCACCGGGGCTT 1692 >seq329789 Length=476 Score = 80.6 bits (88), Expect = 9e-13 Identities = 61/72 (85%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 412 ACTTACCCGACAAGGAATTTCGCTACCTTAGGATGGTTATAGTTACCACCGCCGTTTACT 471 ||||| |||||||||||||||||||| ||||| |||| || ||| ||||||||||| Sbjct 4 ACTTATGCGACAAGGAATTTCGCTACCATAGGACAGTTAGAGGTACTGCCGCCGTTTACC 63 Query 472 GGGGCTTCAATT 483 |||||||| ||| Sbjct 64 GGGGCTTCCATT 75 >seq505876 Length=310 Score = 77.0 bits (84), Expect = 1e-11 Identities = 51/57 (89%), Gaps = 0/57 (0%) Strand=Plus/Minus Query 394 CCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGATGGTTA 450 |||||||||||||||| ||||| |||||||||||||||||||||||||| |||| Sbjct 152 CCATTCGTGCAGGTCGCTACTTATGCGACAAGGAATTTCGCTACCTTAGGACAGTTA 96 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1691058951680