Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lolium_20perenne_20[genbank_20GCA_5F001735685.1_202016-09-20] 666,180 sequences; 481,479,386 total letters Query= AAMG01002223.1 Length=366 Score E Sequences producing significant alignments: (Bits) Value seq99089 84.2 5e-14 seq420953 78.8 2e-12 >seq99089 Length=1166 Score = 84.2 bits (92), Expect = 5e-14 Identities = 73/91 (80%), Gaps = 0/91 (0%) Strand=Plus/Minus Query 115 TCACGCTACTTGGCTGGTTCAGACTCTCGTCCATTGACCAATATTCCTCACTGCTGCCTC 174 |||||| | | ||||| || | || ||| |||||| |||| ||||| |||||||||| | Sbjct 456 TCACGCGATATTGCTGGATCGGGCTTTCGCCCATTGTCCAAGATTCCCCACTGCTGCCCC 397 Query 175 CCGTAGGAGTTTGGACCGTGTCTCAGTTCCA 205 |||| ||||| || |||||||||||| ||| Sbjct 396 CCGTGGGAGTCCGGGCCGTGTCTCAGTCCCA 366 >seq420953 Length=382 Score = 78.8 bits (86), Expect = 2e-12 Identities = 92/122 (75%), Gaps = 2/122 (2%) Strand=Plus/Minus Query 159 TCCTCACTGCTGCCTCCCGTAGGAGTTTGGACCGTGTCTCAGTTCCAATGTGGGGGACCT 218 ||| ||| | |||||||||||||||| ||| |||||||||||| | | ||||| || | Sbjct 369 TCCCCACCGTTGCCTCCCGTAGGAGTCTGGGCCGTGTCTCAGTCCTAGTGTGGTTGATCA 310 Query 219 TCCTCTCAGAACC-CCTATCCATCGTAGGCTAGGTGGGCCGTTACCCCGCCTACTACCTA 277 ||||||| ||||| ||| ||| | | || ||| || || || |||| |||| ||| Sbjct 309 TCCTCTC-GAACCAGCTACTGATCATCGCCTTGGTAAGCTATTGCCTCGCCAACTAGCTA 251 Query 278 AT 279 || Sbjct 250 AT 249 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1061679868160