Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lolium_20perenne_20[genbank_20GCA_5F001735685.1_202016-09-20] 666,180 sequences; 481,479,386 total letters Query= AAMG01002236.1 Length=287 Score E Sequences producing significant alignments: (Bits) Value seq360286 167 4e-39 seq469 107 3e-21 seq327446 102 1e-19 seq120190 98.7 2e-18 seq15471 91.5 2e-16 seq202846 75.2 2e-11 >seq360286 Length=442 Score = 167 bits (184), Expect = 4e-39 Identities = 172/220 (78%), Gaps = 4/220 (2%) Strand=Plus/Minus Query 59 GTGCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGC 118 ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| Sbjct 442 GTGCCGCGAAGCTACCATCTGCTGGATAATGGCTGAACGCCTCTAAGTCAGAATCCATGC 383 Query 119 CAGAACGGGGTGATTCTCTCCTGCACATCGTAGTCGGATACGAATAGGCTTCGGCCCCGA 178 ||||||| |||||| | | || |||| | ||| ||| | ||||||||| |||| | Sbjct 382 CAGAACGCGGTGATAC-CACCCGCACGT-ATAGATGGACAAGAATAGGCTCCGGCTTAGC 325 Query 179 ACCTTAGCAGGCCGGCAACGGGCGTCCCGCGGAAGCGCGGGGCGCTCAGCTGGCGGATTG 238 |||||||||| | ||| | | ||||||||| | | | | | ||| |||| Sbjct 324 GTCTTAGCAGGCGATCTCTCCGCGGCGC-AGGAAGCGCGTCGTGGT-ATTTCGCGTATTG 267 Query 239 CAATTTCACCATGCGCAGGGATAAATCCTTTGCAGACGAC 278 ||||||| || | || ||| |||||||||||||||||| Sbjct 266 TAATTTCAACACGAGCGGGGTCAAATCCTTTGCAGACGAC 227 >seq469 Length=7400 Score = 107 bits (118), Expect = 3e-21 Identities = 98/121 (81%), Gaps = 2/121 (2%) Strand=Plus/Minus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 ||||||||||||||| || |||| | ||||||| | ||| || ||| || |||| Sbjct 1296 GTACGAGAGGAACCGTTGA-TTCACAC-AATTGGTCATCGCGCTTGGTTGAAAAGCCAGT 1239 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGCCA 120 | |||||||||||| | ||| |||||||| ||||||||||||||||||||||||| || | Sbjct 1238 GGCGCGAAGCTACCGTGTGCCGGATTATGACTGAACGCCTCTAAGTCAGAATCCAAGCTA 1179 Query 121 G 121 | Sbjct 1178 G 1178 >seq327446 Length=479 Score = 102 bits (112), Expect = 1e-19 Identities = 92/113 (81%), Gaps = 2/113 (2%) Strand=Plus/Plus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 ||||||||||||| | || ||| | |||||||| || || | |||| ||| |||||| Sbjct 13 GTACGAGAGGAACTGTTGA-TTC-GTGTAATTGGTCTTGGCCGTTGTCCAACCGGGCAGT 70 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATC 113 || |||||||||||| ||| ||| ||||||||||||||||||| ||||||| Sbjct 71 GCGGCGAAGCTACCACACGCTAGATAATGGCTGAACGCCTCTAAGCCAGAATC 123 >seq120190 Length=1019 Score = 98.7 bits (108), Expect = 2e-18 Identities = 97/123 (79%), Gaps = 2/123 (2%) Strand=Plus/Plus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 ||||||||||||||| | |||| |||||||| ||| | |||| || | || | Sbjct 53 GTACGAGAGGAACCGTTCA-TTCACG-TAATTGGTATTTACACCTGTTCGAGAGGACAAT 110 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGCCA 120 | | |||||||||| |||||||||||||||||||||||||||| |||||||| ||| | Sbjct 111 GGTGTGAAGCTACCACGTGCTGGATTATGGCTGAACGCCTCTAAGCCAGAATCCGTGCTA 170 Query 121 GAA 123 ||| Sbjct 171 GAA 173 >seq15471 Length=2921 Score = 91.5 bits (100), Expect = 2e-16 Identities = 90/114 (79%), Gaps = 2/114 (2%) Strand=Plus/Plus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 |||||||||||||||| | ||| || |||||| | ||| || || | ||| | Sbjct 243 GTACGAGAGGAACCGCAGG-TTCGGAC-AATTGGCACATACGGTTGCTCGAGCGAGCAAT 300 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCC 114 |||| |||||||||||| | |||||||| |||||||||||||||||||||||| Sbjct 301 GCCGTGAAGCTACCATCCGTAGGATTATGACTGAACGCCTCTAAGTCAGAATCC 354 >seq202846 Length=691 Score = 75.2 bits (82), Expect = 2e-11 Identities = 56/66 (85%), Gaps = 0/66 (0%) Strand=Plus/Plus Query 57 CAGTGCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCAT 116 ||||| |||| ||||||||||| |||||||| ||||| ||||||||| | |||||||| Sbjct 391 CAGTGGAGCGATGCTACCATCTGTCGGATTATGCCTGAATGCCTCTAAGGCCGAATCCAT 450 Query 117 GCCAGA 122 || ||| Sbjct 451 GCTAGA 456 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 813913195520