Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lolium_20perenne_20[genbank_20GCA_5F001735685.1_202016-09-20] 666,180 sequences; 481,479,386 total letters Query= AAMG01002244.1 Length=504 Score E Sequences producing significant alignments: (Bits) Value seq469 589 7e-166 seq614834 320 5e-85 seq19261 154 4e-35 seq15471 147 7e-33 seq96422 96.9 1e-17 seq301548 93.3 1e-16 >seq469 Length=7400 Score = 589 bits (652), Expect = 7e-166 Identities = 443/513 (86%), Gaps = 12/513 (2%) Strand=Plus/Plus Query 1 GTACTCATTCCAATTACAAGACCCAAAAGAGCCCTGTATCAGTATTTATTGTCACTACCT 60 ||||||||||||||||| |||| | || | |||| |||| |||||||||||||||||| Sbjct 6205 GTACTCATTCCAATTACCAGACACTAATGCGCCCGGTATTGTTATTTATTGTCACTACCT 6264 Query 61 CCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTT 120 ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 6265 CCCCGTGTCAGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTT 6324 Query 121 TCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGGTA 180 ||||||||||||||||||||||||||||||||||| |||| |||||| ||||||||| Sbjct 6325 TCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCTCCGTCACCCGTCACCACCATGGTA 6384 Query 181 GGCCACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGAACCATCGCCGGCT 240 |||| |||||||||||||||||||||||||||||||||||||||||| | |||||||| Sbjct 6385 GGCCCCTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGATGCGTCGCCGGCA 6444 Query 241 C-AAGGCCATGCGATTCGTTAAGTTATTATGAATCACCAAGGAGC--CCCGAAG----GG 293 | | |||| |||||| ||| |||||| |||||||| | ||| | | | || | Sbjct 6445 CGAGGGCCTTGCGATCCGTCGAGTTATCATGAATCATC--GGATCAGCGGGCAGAGCCCG 6502 Query 294 CGTTGGTTTTTTATCTAATAAATACACCCCTTCC-GAAGTCGGGGTTTTTAGCATGTATT 352 ||| | ||||||||||||||| | ||||| || ||||||||||||| | ||| ||||| Sbjct 6503 CGTCAGCCTTTTATCTAATAAATGCGCCCCTCCCAGAAGTCGGGGTTTGTTGCACGTATT 6562 Query 353 AGCTCTAGAATTACCACGGTTATCCATGTAGTAAGGTACTATCAAATAAACGATAACTGA 412 |||||||||||||| |||||||||| |||| | |||| |||||| |||| |||||||| Sbjct 6563 AGCTCTAGAATTACTACGGTTATCCGAGTAG-CACGTACCATCAAACAAACTATAACTGA 6621 Query 413 TTTAATGAGCCATTCGCAGTTTCACTGTATAGATTGCTT-ATACTTAGACATGCATGGCT 471 ||||||||||||||||||||||||| || | |||| || |||||| |||||||||||| Sbjct 6622 TTTAATGAGCCATTCGCAGTTTCACAGTTCAAATTGGTTCATACTTGCACATGCATGGCT 6681 Query 472 TAATCTTTGAGACAAGCATATGACTACTGGCAG 504 ||||||||||||||||||||||||||||||||| Sbjct 6682 TAATCTTTGAGACAAGCATATGACTACTGGCAG 6714 >seq614834 Length=231 Score = 320 bits (354), Expect = 5e-85 Identities = 210/231 (91%), Gaps = 2/231 (1%) Strand=Plus/Plus Query 194 CCATCGAAAGTTGATAGGGCAGAAATTTGAATGAACCATCGCCGGCTCAAGGCCATGCGA 253 ||||||||||||||||||||||| ||||||||||| |||| ||||| ||||||||||||| Sbjct 1 CCATCGAAAGTTGATAGGGCAGATATTTGAATGAAGCATCACCGGCACAAGGCCATGCGA 60 Query 254 TTCGTTAAGTTATTATGAATCACCAAGGAGCCCCGAAGGGCGTTGGTTTTTTATCTAATA 313 |||| |||||||||||| ||||||||||| ||| |||| | |||||||||||||||||| Sbjct 61 TTCGAGAAGTTATTATGAGTCACCAAGGAGACCCAAAGGCCATTGGTTTTTTATCTAATA 120 Query 314 AATACACCCCTTCCGAAG--TCGGGGTTTTTAGCATGTATTAGCTCTAGAATTACCACGG 371 |||||||||||||| ||| | ||| |||| ||||||||||||||||||||||||||| | Sbjct 121 AATACACCCCTTCCAAAGGTTGGGGCTTTTCAGCATGTATTAGCTCTAGAATTACCACAG 180 Query 372 TTATCCATGTAGTAAGGTACTATCAAATAAACGATAACTGATTTAATGAGC 422 ||||||||||||||||||| ||||||||||| |||||||||||||||||| Sbjct 181 TTATCCATGTAGTAAGGTATCATCAAATAAACTATAACTGATTTAATGAGC 231 >seq19261 Length=2679 Score = 154 bits (170), Expect = 4e-35 Identities = 130/160 (81%), Gaps = 0/160 (0%) Strand=Plus/Plus Query 1 GTACTCATTCCAATTACAAGACCCAAAAGAGCCCTGTATCAGTATTTATTGTCACTACCT 60 ||||||||| |||||| ||| | || | || |||| ||||||||||||| |||| Sbjct 978 GTACTCATTTCAATTAGCAGATACTAATATGACCGGTATTGTTATTTATTGTCACAACCT 1037 Query 61 CCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTT 120 ||| ||| ||||||||||||||| | || |||||||||| |||||| | |||| |||| Sbjct 1038 CCCTATGTTAGGATTGGGTAATTTGTGTGCATGCTGCCTTCGTTGGATATAGTAGTCGTT 1097 Query 121 TCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGT 160 ||||| |||||||||| ||||||||||||||||| |||| Sbjct 1098 TCTCATGCTCCCTCTCTAGAATCGAACCCTAATTCTCCGT 1137 >seq15471 Length=2921 Score = 147 bits (162), Expect = 7e-33 Identities = 135/166 (81%), Gaps = 10/166 (6%) Strand=Plus/Minus Query 344 GCATGTATTAGCTCTAGAATTACCACGGTTATCCATGTAGTAAGGT---ACTATCAAATA 400 |||||||||||||||||||||||||| ||||||||| || || | || ||||| || Sbjct 2465 GCATGTATTAGCTCTAGAATTACCACAGTTATCCATATA--AACTTTAAACAATCAAGTA 2408 Query 401 AACGATAACTGATTTAATGAGCCATTCGCAGTTTCACTGT-ATAGATTG---CTTATACT 456 | || |||||||||||||||||||||| ||||| | | | | || | ||| ||| Sbjct 2407 GATTATGACTGATTTAATGAGCCATTCGCGGTTTCGCCCTCACAAATCGGAGCTTGAACT 2348 Query 457 TAGACATGCATGGCTTAATCTTTGAGACAAGCATATGACTACTGGC 502 | |||||||||||||||||||||||||||||||| |||||||||| Sbjct 2347 TT-ACATGCATGGCTTAATCTTTGAGACAAGCATACGACTACTGGC 2303 Score = 136 bits (150), Expect = 1e-29 Identities = 123/155 (79%), Gaps = 0/155 (0%) Strand=Plus/Minus Query 73 ATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTTTCTCAGGCTCCC 132 |||| |||| || |||||||||||| |||| | | ||||||||||||||||| Sbjct 2787 ATTGTGTAAGTTTCGCGCCTGCTGCAGACCTTAGTCCTACTAGCCGTTTCTCAGGCTTGT 2728 Query 133 TCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGGTAGGCCACTATCCT 192 |||||||| |||| |||||| |||||||||||||| |||||||||||| | || ||| Sbjct 2727 TCTCCGGAGTCGAGCCCTAACTCCCCGTTACCCGTCACCACCATGGTAGGCAATTACCCT 2668 Query 193 ACCATCGAAAGTTGATAGGGCAGAAATTTGAATGA 227 |||||| | ||||||||| ||||| | | || ||| Sbjct 2667 ACCATCCACAGTTGATAGAGCAGACACTCGATTGA 2633 >seq96422 Length=1188 Score = 96.9 bits (106), Expect = 1e-17 Identities = 114/152 (75%), Gaps = 2/152 (1%) Strand=Plus/Plus Query 43 TATTTATTGTCACTACCTCCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCC 102 || ||||||||||||||||| |||| |||||||||||| ||| || ||||||| Sbjct 302 TACTTATTGTCACTACCTCCTAGTGTTAAAATTGGGTAATTT-TGCGTCTATAGCCTTCC 360 Query 103 TTGGATGTGGTAGCCGTTTCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTA 162 || | ||||||| ||||| ||||| ||||||| | || || |||| ||| | || Sbjct 361 TTAGGAGTGGTAGAAATTTCTTAGGCTACCTCTCCAGCATGAAATCCTAGTTCTCTACTA 420 Query 163 CCCGTTGATACCATGGTAGGCCACTATCCTAC 194 ||||| |||||| |||| || ||||| ||| Sbjct 421 CCCGTCACTACCATTGTAGACC-CTATCGTAC 451 >seq301548 Length=512 Score = 93.3 bits (102), Expect = 1e-16 Identities = 51/51 (100%), Gaps = 0/51 (0%) Strand=Plus/Plus Query 454 ACTTAGACATGCATGGCTTAATCTTTGAGACAAGCATATGACTACTGGCAG 504 ||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1 ACTTAGACATGCATGGCTTAATCTTTGAGACAAGCATATGACTACTGGCAG 51 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1500338017280