Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lolium_20perenne_20[genbank_20GCA_5F001735685.1_202016-09-20] 666,180 sequences; 481,479,386 total letters Query= NC_010671.1 Length=124279 Score E Sequences producing significant alignments: (Bits) Value seq88849 176 4e-39 seq211562 93.3 3e-14 >seq88849 Length=1251 Score = 176 bits (194), Expect = 4e-39 Identities = 552/843 (65%), Gaps = 23/843 (3%) Strand=Plus/Minus Query 61099 TACAAAAAGGCGGAAGCTTCCTTCTGGACGGTGGAGGAGGTCGATTTGTCCAAAGACATG 61158 ||||| ||||| | || ||||||||||||| |||||||| || | ||| ||| | Sbjct 872 TACAAGAAGGCCGTGGCCTCCTTCTGGACGGCCGAGGAGGTGGACCTCTCCTCGGACGCG 813 Query 61159 AATGACTGGGAG----CGTTTATCGAGCGGTGAACAACATTTCATTAAACATGTGTTGGC 61214 ||||||| | | | ||| ||| || | || ||||| || ||| | || Sbjct 812 CGCCACTGGGACACCACCCTCACCGA-CGGCGAGCGCCACTTCATCTCCCACGTGCTCGC 754 Query 61215 GTTCTTTGCCGCTTCGGACGGTATCGTCAATGAGAATTTATTGGAACGTTTCGCGCAGGA 61274 ||||| ||||| || ||||| ||||| ||||| | | || ||| | || Sbjct 753 CTTCTTCGCCGCCTCCGACGGCATCGTGCTCGAGAACCTCGCGTCCCGCTTCATGTCCGA 694 Query 61275 GGTGCAAGTGTCGGAGGCGCGTTGTTTCTACGGCTTCCAGATTGCCATGGAGAATGTCCA 61334 ||||| ||| | |||||||| ||||||||||||||||| ||||| ||||| |||| Sbjct 693 CGTGCAGGTGGCCGAGGCGCGCGCCTTCTACGGCTTCCAGATCGCCATCGAGAACATCCA 634 Query 61335 CTCGGAGATGTACAGTGTTCTCATCGATACGTACATCAGGGA-GCGGGCGGAACGTGAAC 61393 ||||||||||||| | |||||||| || |||||| | || || | || | | || | Sbjct 633 CTCGGAGATGTACTCGCTGCTCATCGAGACCTACATCCGCGACGCCGCCGAGAAG-GACC 575 Query 61394 GATTGTTCAATGCCATCGAGACGATACCGGCGGTGAAGCGGAAAGCGGATTGGGCCTTCA 61453 | | ||| |||||||| || || || || ||| || || || || ||||| || Sbjct 574 GCCTCTTCCGCGCCATCGACACCATCCCCGCCGTGCGCCGCAAGGCCGACTGGGCGCTCC 515 Query 61454 ATTGGATCACCAGTACAACGGCTA--CATTTGGTGAACGATTGCTGGCATTTGCGGTGGT 61511 |||||| || |||| | || | || || | |||| || || || Sbjct 514 GCTGGATC-----GACGGCGGCGAGCGCTTCGCGGAGCGCATCGTGGCGTTCGCATGCGT 460 Query 61512 CGAGGGTGTATTTTTCAGTGGATCGTTTGCCGCAATCTTTTGGTTGAAGAAACGTGGACT 61571 |||||| | || ||| || || || ||| ||||| ||| | ||||| || || || Sbjct 459 CGAGGGCATCTTCTTCTCGGGCTCCTTCTGCGCCATCTTCTGGCTCAAGAAGCGGGGGCT 400 Query 61572 TATGCCCGGTCTGACCTTCAGCAATGAGTTGATATCACGCGACGAGGGCATGCATTGTGA 61631 |||||||| || |||||| ||| ||| | || |||||||||||||| | || || || Sbjct 399 CATGCCCGGCCTCACCTTCTCCAACGAGCTCATCTCACGCGACGAGGGGCTCCACTGCGA 340 Query 61632 TTTTGCTGTTTTGCTATTCAAACGCTATCTGGTGAATCGTCCGTCGGAGGAGCGTGTGGG 61691 || || | || | | | | || || | | | | ||| ||| ||| Sbjct 339 CTTCGCCTGCCTCCTCTACGAGATC-CTCCGGGGCA--AGCTGGACGAGTCGCGCGTGTT 283 Query 61692 TGAGATTGTTCGTGAGGCGGTAACTATCGAACAGGAATT--TCTGACTGACGCTTTGCCC 61749 ||||| || | ||||| || ||||| | || || |||| ||||| |||| Sbjct 282 CGAGATCGTCAGGGAGGCTGTTGACATCGAGCGCGAGTTCGTCTG--CGACGCGCTGCCA 225 Query 61750 GTCTCACTCATCGGCATGAATTGTGGACTAATGTCGCAGTATATTGAATTTGTTGCCGAC 61809 | | ||| |||||||||| | | || ||| ||||| || || || || |||||| Sbjct 224 TGCGCGCTCGTCGGCATGAACGGCGACCTCATGAGCCAGTACATCGAGTTCGTCGCCGAC 165 Query 61810 CGTCTGTTGGTCGATTTGGGTATGAAGC-GGATCTATAATACGAAAAACCCATTTGATTT 61868 || ||| | | | | || || || || |||| || | | ||||| || || | Sbjct 164 CGCCTGCTCATGGCGCTCGG-CTGCGGCAGGCTCTACAACGCCACCAACCCCTTCGACTG 106 Query 61869 CATGGACATGATTTCGCTGGATGGCAAGACGAATTTTTTCGAGAAACGTGTAGGCGACTA 61928 ||||| | || || ||| | || ||||| || ||||||||||| || || ||||| || Sbjct 105 GATGGAGCTCATCTCCCTGCAGGGAAAGACCAACTTTTTCGAGAAGCGCGTCGGCGAGTA 46 Query 61929 TCA 61931 || Sbjct 45 CCA 43 >seq211562 Length=670 Score = 93.3 bits (102), Expect = 3e-14 Identities = 99/128 (77%), Gaps = 2/128 (2%) Strand=Plus/Plus Query 61190 AACATTTCATTAAACATGTGTTGGCGTTCTTTGCCGCTTCGGACGGTATCGTCAATGAGA 61249 |||| ||||| ||||| ||| | || ||||||||||| || || || |||||||| |||| Sbjct 48 AACACTTCATCAAACACGTGCTTGCTTTCTTTGCCGCGTCTGATGGCATCGTCAACGAGA 107 Query 61250 A-TTTATTGGAACGTTTCGCGCAGGAGGTGCAAGTGTCGGAGGCGCGTTGTTTCTACGGC 61308 | |||| | | ||| ||| ||||| |||||| | || ||||||||||||||||| Sbjct 108 ACCTTATCGAGAGGTTCAGCG-GCGAGGTCCAAGTGGCTGAAGCGCGTTGTTTCTACGGA 166 Query 61309 TTCCAGAT 61316 || || || Sbjct 167 TTTCAAAT 174 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 394340118075200