Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lolium_20perenne_20[genbank_20GCA_5F001735685.1_202016-09-20] 666,180 sequences; 481,479,386 total letters Query= NC_023503.1 Length=48800 Score E Sequences producing significant alignments: (Bits) Value seq585705 100 9e-17 >seq585705 Length=250 Score = 100 bits (110), Expect = 9e-17 Identities = 166/237 (70%), Gaps = 2/237 (1%) Strand=Plus/Plus Query 2560 GACTGGGACGGTTGGAAATCTCTTACTGAACGTCTTGGTGGTAAAGTTCAATTGGTTGGT 2619 ||||||||||| |||||| || ||||| | |||| || |||| |||| || Sbjct 15 GACTGGGACGGCTGGAAAGTCCTGACTGACAAGATCGGTGACAAGATTCAGCTGGTGGGC 74 Query 2620 GACGACTTCTTCGTAACTAACACTGCTTACCTTGAAAAAGGTATTG-CAGAACACGCTGC 2678 |||||| | ||||| || ||||| ||| || |||| || | || | | | | Sbjct 75 GACGACCTGTTCGTGACCAACACCAAGATCCTGAAAGAAGGCATCGACAAGAAAATC-GG 133 Query 2679 TAACTCAATCCTTATCAAAGTTAACCAAATCGGTACTTTGACTGAAACTTTTGACGCTAT 2738 |||||| ||||| ||||| | ||||| ||||| || |||| ||||| | || || || Sbjct 134 TAACTCGATCCTGATCAAGTTCAACCAGATCGGCACCCTGACCGAAACCCTGGAAGCCAT 193 Query 2739 CGAAATGGCGAAAGAAGCTGGATACACAGCAGTAGTATCACACCGTTCAGGTGAAAC 2795 | | ||||| || | || || ||||| ||||| | || |||||||| |||||||| Sbjct 194 CCAGATGGCCAAGGCCGCCGGTTACACCGCAGTGATCTCCCACCGTTCCGGTGAAAC 250 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 154803997771920