Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lolium_20perenne_20[genbank_20GCA_5F001735685.1_202016-09-20] 666,180 sequences; 481,479,386 total letters Query= NC_027867.1 Length=651523 Score E Sequences producing significant alignments: (Bits) Value seq21586 96.9 1e-14 seq9656 84.2 9e-11 >seq21586 Length=2558 Score = 96.9 bits (106), Expect = 1e-14 Identities = 113/153 (74%), Gaps = 0/153 (0%) Strand=Plus/Plus Query 21728 GATGAGTTGGGCGATGCGATCGCCATGCTTGATTTCAAAGTCCTGGTCAGAGTGGTTGAA 21787 ||| || || |||||||| || ||| |||||| |||||||| || ||||||||||| Sbjct 1148 GATCAGCTGCGCGATGCGGTCCCCAGGCTTGACGGCAAAGTCCACCTCGGAGTGGTTGAA 1207 Query 21788 GAGCACCACCCCGACCTTGCCCCTATAAGAACTGTCGACGACCCCGGCGCCGACGTCGAG 21847 |||||| || || ||| ||| | || ||||| ||||||||||| ||||||| Sbjct 1208 GAGCACGACGCCCACCGGGCCGCGGTAGTCCGCGTCGATCACCCCGGCGCCCACGTCGAT 1267 Query 21848 CCCGTTCTTCAAGGCCAGACCCGATCTGGGAGC 21880 | || ||||| |||||||| || || || || Sbjct 1268 CGAGTGCTTCAGCGCCAGACCGGACCTCGGCGC 1300 >seq9656 Length=3472 Score = 84.2 bits (92), Expect = 9e-11 Identities = 67/81 (83%), Gaps = 0/81 (0%) Strand=Plus/Plus Query 120191 GTGCACCGGGACATGAAGTCGCTCAACCTTCTCCTGGACAACAAGTGGAACGTCAAGGTC 120250 |||||||||||||| ||||| |||| | || |||||||| |||||||||| ||||||| Sbjct 2151 GTGCACCGGGACATCAAGTCCAGCAACATCCTGCTGGACAAGAAGTGGAACGCCAAGGTC 2210 Query 120251 TCTGACTTTGGCCTCACCAAG 120271 || ||||| ||| | ||||| Sbjct 2211 TCCGACTTCGGCATGGCCAAG 2231 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 2066948224570840