Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lolium_20perenne_20[genbank_20GCA_5F001735685.1_202016-09-20] 666,180 sequences; 481,479,386 total letters Query= NC_031903.1 Length=172345 Score E Sequences producing significant alignments: (Bits) Value seq351396 286 4e-72 seq162061 188 8e-43 seq664408 179 4e-40 seq41969 152 6e-32 seq597246 132 5e-26 seq217498 125 8e-24 seq178439 113 5e-20 seq466979 102 9e-17 seq63256 100 3e-16 seq71309 91.5 2e-13 seq59528 91.5 2e-13 seq472319 87.8 2e-12 >seq351396 Length=451 Score = 286 bits (316), Expect = 4e-72 Identities = 281/363 (77%), Gaps = 0/363 (0%) Strand=Plus/Minus Query 160427 AGAGAGACGACAGAAACTGAGTCCCAGAACTATGGTTACAAGTTCGGTCAAGAGGAAGAG 160486 || || || || |||| ||| || || | |||||||| || ||||||||||||||| Sbjct 451 AGGGAAACTACTGAAAATGAATCTGCTAATGAGGGTTACAAATTTGGTCAAGAGGAAGAG 392 Query 160487 ACTTACAACATCGTCGCAGCACATGGCTACTTCGGTCGTTTGATCTTCCAATATGCATCC 160546 ||||| || || || || || ||||| || || || || || |||||||||||||| Sbjct 391 ACTTATAATATTGTGGCTGCTCATGGTTATTTTGGCCGATTAATCTTCCAATATGCTAGT 332 Query 160547 TTTAACAACTCACGCTCTCTGCACTTCTTCCTCGCTGCTTGGCCTGTTGTTGGAATCTGG 160606 || |||||||| || ||| | ||||||||| | |||||||||||||| || ||||||||| Sbjct 331 TTCAACAACTCTCGTTCTTTACACTTCTTCTTGGCTGCTTGGCCTGTAGTAGGAATCTGG 272 Query 160607 TTCACTGCCCTTGGTGTTTCTACCATGGCATTCAATCTCAATGGTTTCAACTTCAACCAG 160666 |||||||| | ||| || ||| ||||| ||||| || ||||||||||| |||||||| Sbjct 271 TTCACTGCTTTAGGTATTAGTACTATGGCTTTCAACCTAAATGGTTTCAATTTCAACCAA 212 Query 160667 TCCATCTTGGACAACCAAGGACAAGTTCTGAACACTTGGGCAGACGTGCTTAACCGCGCT 160726 || | | || | ||||| | ||| | || |||||||| || | | ||||| ||| Sbjct 211 TCTGTAGTTGATAGTCAAGGTCGCGTTATTAATACTTGGGCTGATATCATCAACCGAGCT 152 Query 160727 GGTCTGGGCATGGAAGTCATGCACGAGCGTAACGCTCACAACTTCCCTCTCGACCTTGCT 160786 ||| || |||||||| |||||||| ||||| ||||||||||||||||| ||||| ||| Sbjct 151 AATCTTGGTATGGAAGTAATGCACGAACGTAATGCTCACAACTTCCCTCTAGACCTAGCT 92 Query 160787 GCT 160789 ||| Sbjct 91 GCT 89 >seq162061 Length=815 Score = 188 bits (208), Expect = 8e-43 Identities = 252/348 (72%), Gaps = 2/348 (1%) Strand=Plus/Plus Query 161818 CTCCACGGGGCTTTCGCTCTGATTGGATTCATGCTTCGTCAGTTTGAACTTGCTCG-TCT 161876 |||||||||||||| || || || || |||||| | || || |||||||||||||| ||| Sbjct 216 CTCCACGGGGCTTTTGCACTAATAGGTTTCATGTTACGCCAATTTGAACTTGCTCGGTCT 275 Query 161877 TATCGGTATCCGTCCTTACAATGCTATTGCTTTCTCTGGTCCTATTGCTGTTTTTGTCAG 161936 || | | || ||||| ||||| || | ||||||||||| || || |||||||| Sbjct 276 GTTCAAT-TGCGGCCTTATAATGCAATCTCATTCTCTGGTCCAATCGCGGTTTTTGTTTC 334 Query 161937 CGTCTTTCTCATATATCCTCTGGGACAGTCGTCCTGGTTCTTCGCGCCATCGTTTGGGGT 161996 || || || || ||||| ||||| || || |||||||| ||||| ||||| || Sbjct 335 TGTATTCCTTATTTATCCACTGGGGCAATCTGGTTGGTTCTTTGCGCCGAGTTTTGGCGT 394 Query 161997 TGCCGCTATTTTCAGGTTCTTACTTTTCCTACAAGGTTTCCACAATTGGACGCTTAATCC 162056 || || || || | ||| | |||||| | ||||| || || ||||||||| | || || Sbjct 395 AGCAGCAATATTTCGATTCATCCTTTTCTTCCAAGGATTTCATAATTGGACGTTGAACCC 454 Query 162057 GTTCCACATGATGGGTGTCGCAGGTATCTTGGGTGGTGCTTTGCTCTCTGCTATTCACGG 162116 || || |||||||| || || || | || || | ||| |||| | |||||||| || Sbjct 455 ATTTCATATGATGGGAGTTGCCGGAGTATTAGGCGCGGCTCTGCTATGCGCTATTCATGG 514 Query 162117 TGTGACTGTTGAAAACACGCTCTACCAAGATGGTGAACAAGCAAATAC 162164 | ||| || |||||||| || | | || ||||| |||||||| Sbjct 515 AGCGACCGTAGAAAACACTCTATTTGAGGACGGTGATGGTGCAAATAC 562 >seq664408 Length=200 Score = 179 bits (198), Expect = 4e-40 Identities = 155/192 (81%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 160186 TGTTGCATACTCTGCTCCAGTCGCTGCTGCTTCTGCTGTATTCCTCGTCTACCCCTTCGG 160245 |||||||||||| ||||| || || |||||| ||||||| ||| | | ||||| | || Sbjct 193 TGTTGCATACTCAGCTCCTGTTGCGGCTGCTACTGCTGTTTTCTTGATTTACCCTATTGG 134 Query 160246 TCAGGGTTCTTTCTCCGATGCTATGCCTCTTGGTATCTCTGGTACTTTTAACTATATGCT 160305 ||| || ||||| |||| ||||||| | || || ||||||| ||| |||| |||| | Sbjct 133 TCAAGGAAGCTTCTCTGATGGTATGCCTTTAGGAATATCTGGTATTTTCAACTTTATGAT 74 Query 160306 TGTATTCCAAGCAGAACACAATATCCTTATGCATCCGTTCCACATGCTCGGTGTTGCTGG 160365 ||||||||| ||||| ||||| |||||||||||||| ||||||||| | ||||| ||||| Sbjct 73 TGTATTCCAGGCAGAGCACAACATCCTTATGCATCCATTCCACATGTTAGGTGTAGCTGG 14 Query 160366 GGTATTCGGTGG 160377 |||||||| || Sbjct 13 TGTATTCGGCGG 2 >seq41969 Length=1890 Score = 152 bits (168), Expect = 6e-32 Identities = 171/226 (76%), Gaps = 2/226 (1%) Strand=Plus/Minus Query 162310 TGGACAAGTTCTATCGGTATTATTGGACTCGCTCTTAATCTTCGTGCTTACGACTTTGTA 162369 |||| ||| |||| || | | || || ||||| || | ||||| || || ||||| Sbjct 576 TGGATGAGTGCTATTGGCGTAGTAGGCCTGGCTCTGAACTTACGTGCCTATGATTTTGTT 517 Query 162370 TCTCAGGAGATTCGTGCAGCGGAGGATCCTGAATTTGAAACCTTCTACACCAAGAATATC 162429 || ||||| || ||||||||||| |||| ||||||||| || ||||||||||| ||||| Sbjct 516 TCCCAGGA-ATCCGTGCAGCGGAAGATCGTGAATTTGAGACTTTCTACACCAAAAATATT 458 Query 162430 CTCTTGAATGAAGGTCTTCGTGCATGGTTGGCACCAGTTGATCAACCGCATGAGAACTTT 162489 || || || || ||| ||||||| ||| ||||| | ||||| || ||||| || || Sbjct 457 CTTTTAAACGAGGGTATTCGTGCGTGGATGGCAGCTCAGGATCAGCCTCATGAAAATCTT 398 Query 162490 GTATTCCCTGAGGAAGTTCTGCCTAGAGGTAACGCACTGTGAATGG 162535 ||||||||||||| ||||| || | || ||||| || | ||||| Sbjct 397 ATATTCCCTGAGGAGGTTCTACCACGTGGAAACGCTCT-TTAATGG 353 >seq597246 Length=243 Score = 132 bits (146), Expect = 5e-26 Identities = 168/231 (73%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 159971 TACGGTAACAACATCATCTCTGGTGCAGTTGTTCCCTCTTCCAACGCAATTGGTCTTCAC 160030 || || ||||| || ||||||||||| || |||| |||| || || || | ||| Sbjct 231 TATGGAAACAATATTATCTCTGGTGCTATTATTCCTACTTCGGCGGCGATCGGATTGCAC 172 Query 160031 TTCTATCCCATTTGGGAAGCCGCATCGCTCGACGAGTGGCTCTATAACGGTGGTCCTTTC 160090 || || || ||||||||||| ||||| | || |||||| | || || |||||||||| Sbjct 171 TTTTACCCAATTTGGGAAGCTGCATCTGTTGATGAGTGGTTATACAATGGTGGTCCTTAT 112 Query 160091 CAACTCGTAGTCTTCCACTTCCTGATCGGCATCTATGCCTATATGGGTCGTGAGTGGGAA 160150 | || | || | |||||| | | || | | ||||||||||||||||||||| Sbjct 111 GAGCTAATTGTTCTACACTTCTTACTTGGTGTAGCTTGTTATATGGGTCGTGAGTGGGAA 52 Query 160151 CTCTCTTACCGTCTCGGTATGCGTCCCTGGATCTGTGTTGCATACTCTGCT 160201 || || |||| | ||||||||||| ||||| |||||||||||| ||| Sbjct 51 CTTAGTTTCCGTTTGGGTATGCGTCCTTGGATTGCTGTTGCATACTCAGCT 1 >seq217498 Length=656 Score = 125 bits (138), Expect = 8e-24 Identities = 156/211 (74%), Gaps = 2/211 (1%) Strand=Plus/Plus Query 159803 TTCTGCGAGTGGGTAACTTCTACCAATAACCGCCTCTATGTCGGTTGGTTCGGCGTCCTG 159862 |||||| | ||| ||||| || | ||||| || || |||| |||||||| || || Sbjct 321 TTCTGCAACTGGATAACTAGCACTGAAAACCGTCTTTACATCGGATGGTTCGGTGTTTTG 380 Query 159863 ATGATCCCAACTCTGTTGGCAGCAACTATCTGC-TTCATCGTCGCCTTCATCGCTGCTCC 159921 |||||||| ||| | ||| | |||||| |||| || || |||||||||||||||| || Sbjct 381 ATGATCCCTACTTTATTGACCGCAACT-TCTGTATTTATTATCGCCTTCATCGCTGCCCC 439 Query 159922 CCCTGTGGACATCGATGGCATCCGTGAACCCGTCGCTGGTTCACTCATGTACGGTAACAA 159981 || || || || ||||| || ||||| || || ||||||| | | || || ||||| Sbjct 440 TCCAGTAGATATTGATGGTATTCGTGAGCCTGTTTCTGGTTCTTTACTTTATGGAAACAA 499 Query 159982 CATCATCTCTGGTGCAGTTGTTCCCTCTTCC 160012 || |||||||||| || |||| ||||| Sbjct 500 TATTCTCTCTGGTGCTATTATTCCTACTTCC 530 >seq178439 Length=759 Score = 113 bits (124), Expect = 5e-20 Identities = 116/152 (76%), Gaps = 6/152 (4%) Strand=Plus/Plus Query 162358 TACGACTTTGTATCTCAGGAGATTCGTGCAGCGGAGGATCCTGAATTTGAAACCTTCTAC 162417 || |||||||| || |||| || |||||| |||| |||| ||||||||| || |||||| Sbjct 613 TATGACTTTGTTTCCTAGGAAATCCGTGCAACGGAAGATCGTGAATTTGAGACTTTCTAC 672 Query 162418 ACCAAGAATATCCTCTTGAATGAAGGTCTTCGTGCATGGTTGGCACCAGTTGATCAACCG 162477 ||||| ||||| || || ||||| ||| |||||| ||| ||||| | ||| Sbjct 673 ACCAAAAATATTCTTTTAAATGAGGGTATTCGTGGGTGGATGGCAGCTTAGGAT------ 726 Query 162478 CATGAGAACTTTGTATTCCCTGAGGAAGTTCT 162509 ||||| || || ||||||||||||| ||||| Sbjct 727 CATGAAAATCTTATATTCCCTGAGGAGGTTCT 758 >seq466979 Length=342 Score = 102 bits (112), Expect = 9e-17 Identities = 94/119 (79%), Gaps = 0/119 (0%) Strand=Plus/Minus Query 162172 GCTTTTGACTCTACGCAAGAGGAGGAGACTTACTCGATGGTTACTGCGAACCGTTTCTGG 162231 |||||| || | || |||| || || ||||| || ||||| ||||| ||| | || ||| Sbjct 237 GCTTTTAACCCAACTCAAGCTGAAGAAACTTATTCAATGGTCACTGCTAACTGCTTTTGG 178 Query 162232 TCACAGATCTTCGGTATTGCTTTTAGTAATAAGCGTTGGTTGCATTTCTTTATGCTCTT 162290 || || ||||| ||| |||||||| ||||| |||||||| |||||||||||||| || Sbjct 177 TCCCAAATCTTTGGTGTTGCTTTTTCCAATAAACGTTGGTTACATTTCTTTATGCTATT 119 >seq63256 Length=1526 Score = 100 bits (110), Expect = 3e-16 Identities = 139/192 (72%), Gaps = 2/192 (1%) Strand=Plus/Plus Query 161743 CTTCTCTGGGGTCCTGAGGCTCAAGGGGATTTCGTCAGGTGGATCCAACTTGGGGGACTC 161802 || || ||||| || || || ||||| ||||| | ||| || | || || | Sbjct 21 CTACTATGGGGGCCGGAAGCACAAGGAGATTTTACTCGCTGGTGTCAGTTAGGCGGTTTA 80 Query 161803 TGGAATTTTGTGGCGCTCCACGGGGCTTTCGCTCTGATTGGATTCATGCTTCGTCAGTTT 161862 |||| ||||| || |||||||||||||| || || || || |||||| | || || ||| Sbjct 81 TGGACGTTTGTAGCTCTCCACGGGGCTTTTGCACTAATAGGTTTCATGTTACGCCAATTT 140 Query 161863 GAACTTGCTC-GTCTTATCGGTATCCGTCCTTACAATGCTATTGCTTTCTCTGGTCCTAT 161921 |||||||||| |||| || | | || ||||| ||||| || | ||||||| ||| || Sbjct 141 GAACTTGCTCGGTCTGTTCAAT-TGCGGCCTTATAATGCAATCTCATTCTCTGATCCAAT 199 Query 161922 TGCTGTTTTTGT 161933 || |||||||| Sbjct 200 CGCGGTTTTTGT 211 >seq71309 Length=1427 Score = 91.5 bits (100), Expect = 2e-13 Identities = 94/123 (76%), Gaps = 0/123 (0%) Strand=Plus/Plus Query 160462 TTACAAGTTCGGTCAAGAGGAAGAGACTTACAACATCGTCGCAGCACATGGCTACTTCGG 160521 |||||| || |||||||||||||||||||| || || || | ||||| || || Sbjct 678 TTACAATTTTGGTCAAGAGGAAGAGACTTATAATATTGTGTTTGTGCATGGTTATTTTTT 737 Query 160522 TCGTTTGATCTTCCAATATGCATCCTTTAACAACTCACGCTCTCTGCACTTCTTCCTCGC 160581 || || |||||||||||||||| || ||||||||||| ||| | ||||| ||| | | Sbjct 738 CCGATTAATCTTCCAATATGCATGTTTCAACAACTCACGTTCTTTCCACTTTTTCTTGTC 797 Query 160582 TGC 160584 ||| Sbjct 798 TGC 800 >seq59528 Length=1577 Score = 91.5 bits (100), Expect = 2e-13 Identities = 106/143 (74%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 160361 GCTGGGGTATTCGGTGGATCTCTGTTCTCTGCTATGCATGGATCTCTGGTTACTTCTAGT 160420 ||||| |||||||| || || || || |||||||||||| || |||| || |||||| Sbjct 418 GCTGGTGTATTCGGCGGCTCCCTATTTAGTGCTATGCATGGTTCCTTGGTAACCTCTAGT 477 Query 160421 CTCGTCAGAGAGACGACAGAAACTGAGTCCCAGAACTATGGTTACAAGTTCGGTCAAGAG 160480 | |||| || | | |||| ||| || || | |||||||| || ||||||||| Sbjct 478 TTGATCAGGGAAATTATTGAAAATGAATCTGCTAATGAGGGTTACAAATTTGGTCAAGAG 537 Query 160481 GAAGAGACTTACAACATCGTCGC 160503 ||||||||||| || || || || Sbjct 538 GAAGAGACTTATAATATTGTGGC 560 >seq472319 Length=337 Score = 87.8 bits (96), Expect = 2e-12 Identities = 86/111 (77%), Gaps = 0/111 (0%) Strand=Plus/Minus Query 160465 CAAGTTCGGTCAAGAGGAAGAGACTTACAACATCGTCGCAGCACATGGCTACTTCGGTCG 160524 ||| || |||||||||||||||| ||| || || || || || ||||| || || || | Sbjct 337 CAAATTTGGTCAAGAGGAAGAGATTTATAATATTGTGGCTGCTCATGGTTATTTTGGCCA 278 Query 160525 TTTGATCTTCCAATATGCATCCTTTAACAACTCACGCTCTCTGCACTTCTT 160575 || |||||||||||||| || |||||||| || ||| | |||||||| Sbjct 277 ATTAATCTTCCAATATGCTAGTTTCAACAACTCTCGTTCTTTACACTTCTT 227 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 546784554204000