Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lolium_20perenne_20[genbank_20GCA_5F001735685.1_202016-09-20] 666,180 sequences; 481,479,386 total letters Query= NC_031906.1 Length=198190 Score E Sequences producing significant alignments: (Bits) Value seq351396 279 6e-70 seq162061 206 3e-48 seq597246 132 6e-26 seq664408 131 2e-25 seq217498 122 1e-22 seq63256 107 2e-18 seq466979 100 4e-16 seq178439 95.1 2e-14 seq171123 93.3 5e-14 seq472319 87.8 2e-12 seq469365 87.8 2e-12 seq71309 82.4 1e-10 >seq351396 Length=451 Score = 279 bits (308), Expect = 6e-70 Identities = 277/359 (77%), Gaps = 0/359 (0%) Strand=Plus/Minus Query 189478 GAAACCACTGAAACCGAGTCCCAGAACTATGGTTACAAGTTTGGACAAGAAGAAGAAACG 189537 ||||| ||||||| || || || | |||||||| ||||| ||||| ||||| || Sbjct 448 GAAACTACTGAAAATGAATCTGCTAATGAGGGTTACAAATTTGGTCAAGAGGAAGAGACT 389 Query 189538 TACAACATCGTTGCTGCTCATGGATATTTCGGTCGTCTTATCTTCCAATATGCATCGTTC 189597 || || || || ||||||||||| ||||| || || | |||||||||||||| ||| Sbjct 388 TATAATATTGTGGCTGCTCATGGTTATTTTGGCCGATTAATCTTCCAATATGCTAGTTTC 329 Query 189598 AACAACTCCCGTTCACTTCACTTCTTCCTCGCTGCCTGGCCAGTCGTGGGTATCTGGTTT 189657 |||||||| ||||| | ||||||||| | ||||| ||||| || || || |||||||| Sbjct 328 AACAACTCTCGTTCTTTACACTTCTTCTTGGCTGCTTGGCCTGTAGTAGGAATCTGGTTC 269 Query 189658 ACCGCCCTCGGCGTCAGCACCATGGCATTCAACCTCAATGGGTTCAACTTCAATCAATCC 189717 || || | || | || || ||||| |||||||| ||||| ||||| ||||| ||||| Sbjct 268 ACTGCTTTAGGTATTAGTACTATGGCTTTCAACCTAAATGGTTTCAATTTCAACCAATCT 209 Query 189718 ATTCTTGATGGTCAAGGTCGTGTTCTGAACACATGGGCAGACGTTCTCAACCGTGCTGGT 189777 | ||||| |||||||||| ||| | || || ||||| || | ||||||| ||| | Sbjct 208 GTAGTTGATAGTCAAGGTCGCGTTATTAATACTTGGGCTGATATCATCAACCGAGCTAAT 149 Query 189778 CTTGGTATGGAAGTCATGCATGAGCGTAACGCTCACAACTTCCCTCTTGATCTGGCAGC 189836 |||||||||||||| ||||| || ||||| ||||||||||||||||| || || || || Sbjct 148 CTTGGTATGGAAGTAATGCACGAACGTAATGCTCACAACTTCCCTCTAGACCTAGCTGC 90 >seq162061 Length=815 Score = 206 bits (228), Expect = 3e-48 Identities = 249/336 (74%), Gaps = 2/336 (1%) Strand=Plus/Plus Query 190290 CTCCACGGGGCTTTCGCTCTAATTGGATTCATGCTTCGTCAGTTTGAACTGGCACG-TCT 190348 |||||||||||||| || ||||| || |||||| | || || |||||||| || || ||| Sbjct 216 CTCCACGGGGCTTTTGCACTAATAGGTTTCATGTTACGCCAATTTGAACTTGCTCGGTCT 275 Query 190349 CATCGGTATCCGTCCTTACAATGCTATTGCGTTCTCTGGTCCTATCGCTGTTTTTGTTAG 190408 || | | || ||||| ||||| || | ||||||||||| ||||| ||||||||| Sbjct 276 GTTCAAT-TGCGGCCTTATAATGCAATCTCATTCTCTGGTCCAATCGCGGTTTTTGTTTC 334 Query 190409 CGTCTTTCTCATCTACCCTCTGGGTCAATCGAGTTGGTTCTTCGCGCCATCCTTCGGTGT 190468 || || || || || || ||||| ||||| |||||||||| ||||| || || || Sbjct 335 TGTATTCCTTATTTATCCACTGGGGCAATCTGGTTGGTTCTTTGCGCCGAGTTTTGGCGT 394 Query 190469 GGCAGCGATCTTCCGCTTCCTCCTCTTCTTGCAGGGCTTCCATAACTGGACGCTGAACCC 190528 ||||| || || || ||| |||| ||||| || || || ||||| |||||| ||||||| Sbjct 395 AGCAGCAATATTTCGATTCATCCTTTTCTTCCAAGGATTTCATAATTGGACGTTGAACCC 454 Query 190529 CTTCCACATGATGGGTGTTGCAGGTATCCTGGGAGGAGCACTACTGTCAGCAATCCATGG 190588 || || |||||||| ||||| || | | || | || || || | || || ||||| Sbjct 455 ATTTCATATGATGGGAGTTGCCGGAGTATTAGGCGCGGCTCTGCTATGCGCTATTCATGG 514 Query 190589 TGTGACTGTAGAGAATACTTTGTATGAAGATGGTGA 190624 | ||| ||||| || ||| | | ||| || ||||| Sbjct 515 AGCGACCGTAGAAAACACTCTATTTGAGGACGGTGA 550 >seq597246 Length=243 Score = 132 bits (146), Expect = 6e-26 Identities = 173/234 (74%), Gaps = 8/234 (3%) Strand=Plus/Minus Query 189019 TATGGAAACAACATCATCTCTGGTGCTGTTGTCCCTTCATCCAACGCAATTGGTCTTCAC 189078 ||||||||||| || |||||||||||| || | ||| | || || || || | ||| Sbjct 231 TATGGAAACAATATTATCTCTGGTGCTATTATTCCTACTTCGGCGGCGATCGGATTGCAC 172 Query 189079 TTCTACCCCATCTGGGAAGCCGCCTCACTCGATGAGTGGCTCTACAACGGTGGTCCTTTC 189138 || ||||| || |||||||| || || | ||||||||| | ||||| |||||||||| Sbjct 171 TTTTACCCAATTTGGGAAGCTGCATCTGTTGATGAGTGGTTATACAATGGTGGTCCTTAT 112 Query 189139 CAACTGGTAGTCTTCCACTTCCTCATCGGCATCTACGC---CTACATGGGTCGTGAGTGG 189195 | || | || | |||||| | | || | || || || ||||||||||||||| Sbjct 111 GAGCTAATTGTTCTACACTTCTTACTTGG--TGTA-GCTTGTTATATGGGTCGTGAGTGG 55 Query 189196 GAACTCTCTTACCGTCTCGGTATGCGTCCTTGGATCTGC-ATTGCTTACTCTGC 189248 ||||| || |||| | ||||||||||||||||| ||| |||| ||||| || Sbjct 54 GAACTTAGTTTCCGTTTGGGTATGCGTCCTTGGAT-TGCTGTTGCATACTCAGC 2 >seq664408 Length=200 Score = 131 bits (144), Expect = 2e-25 Identities = 143/190 (75%), Gaps = 0/190 (0%) Strand=Plus/Minus Query 189236 TTGCTTACTCTGCACCTGTTGCAGCAGCATCCGCAGTCTTTCTGGTCTATCCTTTTGGTC 189295 |||| ||||| || |||||||| || || | || || || || | || ||| |||||| Sbjct 191 TTGCATACTCAGCTCCTGTTGCGGCTGCTACTGCTGTTTTCTTGATTTACCCTATTGGTC 132 Query 189296 AAGGTTCTTTCTCTGACGCAATGCCCTTGGGTATCAGTGGAACCTTCAACTACATGCTTG 189355 |||| |||||||| | ||||| || || || ||| | ||||||| ||| ||| Sbjct 131 AAGGAAGCTTCTCTGATGGTATGCCTTTAGGAATATCTGGTATTTTCAACTTTATGATTG 72 Query 189356 TCTTCCAAGCAGAGCACAACATCCTGATGCACCCCTTCCACATGCTGGGAGTCGCAGGTG 189415 | ||||| ||||||||||||||||| ||||| || ||||||||| | || || || |||| Sbjct 71 TATTCCAGGCAGAGCACAACATCCTTATGCATCCATTCCACATGTTAGGTGTAGCTGGTG 12 Query 189416 TCTTCGGTGG 189425 | ||||| || Sbjct 11 TATTCGGCGG 2 >seq217498 Length=656 Score = 122 bits (134), Expect = 1e-22 Identities = 155/211 (73%), Gaps = 2/211 (1%) Strand=Plus/Plus Query 188851 TTCTGCGAATGGGTCACCTCTACTAACAACCGTCTGTATGTCGGTTGGTTCGGTGTCCTG 188910 |||||| | ||| | || ||| | |||||||| || |||| ||||||||||| || Sbjct 321 TTCTGCAACTGGATAACTAGCACTGAAAACCGTCTTTACATCGGATGGTTCGGTGTTTTG 380 Query 188911 ATGATCCCTACGCTTCTCGCTGCAACCATCTGC-TTCATCGTCGCCTTTGTCGCTGCACC 188969 ||||||||||| | | | ||||| |||| || || ||||||| ||||||| || Sbjct 381 ATGATCCCTACTTTATTGACCGCAACT-TCTGTATTTATTATCGCCTTCATCGCTGCCCC 439 Query 188970 CCCTGTAGACATTGATGGCATCCGCGAACCCGTCGCTGGTTCACTCATGTATGGAAACAA 189029 || ||||| |||||||| || || || || || ||||||| | | ||||||||||| Sbjct 440 TCCAGTAGATATTGATGGTATTCGTGAGCCTGTTTCTGGTTCTTTACTTTATGGAAACAA 499 Query 189030 CATCATCTCTGGTGCTGTTGTCCCTTCATCC 189060 || ||||||||||| || | ||| | ||| Sbjct 500 TATTCTCTCTGGTGCTATTATTCCTACTTCC 530 >seq63256 Length=1526 Score = 107 bits (118), Expect = 2e-18 Identities = 141/193 (73%), Gaps = 2/193 (1%) Strand=Plus/Plus Query 190215 CTACTTTGGGGTCCTGAATCTCAAGGCGATTTCGTCAGGTGGATCCAACTTGGGGGACTC 190274 ||||| ||||| || ||| | ||||| ||||| | ||| || | || || | Sbjct 21 CTACTATGGGGGCCGGAAGCACAAGGAGATTTTACTCGCTGGTGTCAGTTAGGCGGTTTA 80 Query 190275 TGGGCTTTTGTGGCGCTCCACGGGGCTTTCGCTCTAATTGGATTCATGCTTCGTCAGTTT 190334 ||| | ||||| || |||||||||||||| || ||||| || |||||| | || || ||| Sbjct 81 TGGACGTTTGTAGCTCTCCACGGGGCTTTTGCACTAATAGGTTTCATGTTACGCCAATTT 140 Query 190335 GAACTGGCAC-GTCTCATCGGTATCCGTCCTTACAATGCTATTGCGTTCTCTGGTCCTAT 190393 ||||| || | |||| || | | || ||||| ||||| || | ||||||| ||| || Sbjct 141 GAACTTGCTCGGTCTGTTCAAT-TGCGGCCTTATAATGCAATCTCATTCTCTGATCCAAT 199 Query 190394 CGCTGTTTTTGTT 190406 ||| ||||||||| Sbjct 200 CGCGGTTTTTGTT 212 >seq466979 Length=342 Score = 100 bits (110), Expect = 4e-16 Identities = 87/108 (81%), Gaps = 0/108 (0%) Strand=Plus/Minus Query 190656 ACACAAGAGGAAGAGACCTATTCGATGGTCACTGCCAACCGTTTCTGGTCTCAAATCTTT 190715 || |||| ||||| || ||||| ||||||||||| ||| | || ||||| ||||||||| Sbjct 225 ACTCAAGCTGAAGAAACTTATTCAATGGTCACTGCTAACTGCTTTTGGTCCCAAATCTTT 166 Query 190716 GGTGTTGCGTTCAGTAATAAGAGGTGGTTGCATTTCTTTATGCTCTTT 190763 |||||||| || ||||| | ||||| |||||||||||||| ||| Sbjct 165 GGTGTTGCTTTTTCCAATAAACGTTGGTTACATTTCTTTATGCTATTT 118 >seq178439 Length=759 Score = 95.1 bits (104), Expect = 2e-14 Identities = 110/149 (74%), Gaps = 6/149 (4%) Strand=Plus/Plus Query 190830 TATGACTTTGTATCCCAAGAGATCAGAGCAGCAGAAGATCCAGAGTTCGAGACTTTTTAC 190889 ||||||||||| ||| | || ||| | ||| | ||||||| || || |||||||| ||| Sbjct 613 TATGACTTTGTTTCCTAGGAAATCCGTGCAACGGAAGATCGTGAATTTGAGACTTTCTAC 672 Query 190890 ACAAAAAATATACTTTTGAATGAAGGTCTTCGTTCATGGTTGGCACCTGTTGATCAACCC 190949 || |||||||| ||||| ||||| ||| ||||| ||| ||||| || ||| Sbjct 673 ACCAAAAATATTCTTTTAAATGAGGGTATTCGTGGGTGGATGGCAGCTTAGGAT------ 726 Query 190950 CATGAGAATTTTGTATTTCCAGAAGAAGT 190978 ||||| ||| || |||| || || || || Sbjct 727 CATGAAAATCTTATATTCCCTGAGGAGGT 755 >seq171123 Length=784 Score = 93.3 bits (102), Expect = 5e-14 Identities = 107/143 (75%), Gaps = 2/143 (1%) Strand=Plus/Plus Query 189687 CAACCTCAATGGGTTCAACTTCAATCAATCCATTCTTGATG--GTCAAGGTCGTGTTCTG 189744 |||||| ||||| ||| | || || ||||| | ||||| ||||||| || ||| | Sbjct 642 CAACCTAAATGGTTTCCATTTTAACCAATCTGTAGTTGATACAGTCAAGGCCGCGTTATT 701 Query 189745 AACACATGGGCAGACGTTCTCAACCGTGCTGGTCTTGGTATGGAAGTCATGCATGAGCGT 189804 || || || | || | ||||||||||| | ||||||||||||| ||||| | || Sbjct 702 AATACTTGAGATGATATCATCAACCGTGCTAATTTTGGTATGGAAGTAATGCACAAACGA 761 Query 189805 AACGCTCACAACTTCCCTCTTGA 189827 || ||||||||||||||||| || Sbjct 762 AATGCTCACAACTTCCCTCTAGA 784 >seq472319 Length=337 Score = 87.8 bits (96), Expect = 2e-12 Identities = 86/111 (77%), Gaps = 0/111 (0%) Strand=Plus/Minus Query 189513 CAAGTTTGGACAAGAAGAAGAAACGTACAACATCGTTGCTGCTCATGGATATTTCGGTCG 189572 ||| ||||| ||||| ||||| | || || || || ||||||||||| ||||| || | Sbjct 337 CAAATTTGGTCAAGAGGAAGAGATTTATAATATTGTGGCTGCTCATGGTTATTTTGGCCA 278 Query 189573 TCTTATCTTCCAATATGCATCGTTCAACAACTCCCGTTCACTTCACTTCTT 189623 | |||||||||||||| ||||||||||| ||||| | |||||||| Sbjct 277 ATTAATCTTCCAATATGCTAGTTTCAACAACTCTCGTTCTTTACACTTCTT 227 >seq469365 Length=340 Score = 87.8 bits (96), Expect = 2e-12 Identities = 84/108 (78%), Gaps = 0/108 (0%) Strand=Plus/Minus Query 190830 TATGACTTTGTATCCCAAGAGATCAGAGCAGCAGAAGATCCAGAGTTCGAGACTTTTTAC 190889 ||||||||||| ||| | || ||| | ||| | ||||||| || |||||| |||| ||| Sbjct 279 TATGACTTTGTTTCCTAGGAAATCCGTGCAACGGAAGATCTTGAATTCGAGGCTTTCTAC 220 Query 190890 ACAAAAAATATACTTTTGAATGAAGGTCTTCGTTCATGGTTGGCACCT 190937 || |||||||| ||| | || || ||| ||||| | ||| ||||| || Sbjct 219 ACGAAAAATATTCTTCTAAACGAGGGTGTTCGTGCGTGGATGGCAGCT 172 >seq71309 Length=1427 Score = 82.4 bits (90), Expect = 1e-10 Identities = 92/123 (75%), Gaps = 0/123 (0%) Strand=Plus/Plus Query 189510 TTACAAGTTTGGACAAGAAGAAGAAACGTACAACATCGTTGCTGCTCATGGATATTTCGG 189569 |||||| ||||| ||||| ||||| || || || || || || ||||| ||||| Sbjct 678 TTACAATTTTGGTCAAGAGGAAGAGACTTATAATATTGTGTTTGTGCATGGTTATTTTTT 737 Query 189570 TCGTCTTATCTTCCAATATGCATCGTTCAACAACTCCCGTTCACTTCACTTCTTCCTCGC 189629 || | |||||||||||||||| ||||||||||| ||||| | ||||| ||| | | Sbjct 738 CCGATTAATCTTCCAATATGCATGTTTCAACAACTCACGTTCTTTCCACTTTTTCTTGTC 797 Query 189630 TGC 189632 ||| Sbjct 798 TGC 800 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 628799857320000