Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lolium_20perenne_20[genbank_20GCA_5F001735685.1_202016-09-20] 666,180 sequences; 481,479,386 total letters Query= NC_031922.1 Length=174830 Score E Sequences producing significant alignments: (Bits) Value seq351396 284 1e-71 seq162061 210 2e-49 seq664408 178 1e-39 seq597246 152 6e-32 seq217498 143 3e-29 seq466979 111 2e-19 seq41969 109 6e-19 seq472319 102 9e-17 seq71309 86.0 7e-12 seq623740 84.2 2e-11 seq171123 84.2 2e-11 seq279680 82.4 8e-11 >seq351396 Length=451 Score = 284 bits (314), Expect = 1e-71 Identities = 279/360 (78%), Gaps = 0/360 (0%) Strand=Plus/Minus Query 161199 GAAACCACTGAGAACGAGTCCCAGAACTATGGTTACAAGTTTGGTCAAGAAGAAGAGACC 161258 ||||| ||||| || || || || | |||||||| ||||||||||| |||||||| Sbjct 448 GAAACTACTGAAAATGAATCTGCTAATGAGGGTTACAAATTTGGTCAAGAGGAAGAGACT 389 Query 161259 TACAACATCGTCGCTGCTCATGGTTACTTCGGTCGCCTGATCTTCCAATACGCTTCCTTC 161318 || || || || |||||||||||||| || || || | ||||||||||| ||| ||| Sbjct 388 TATAATATTGTGGCTGCTCATGGTTATTTTGGCCGATTAATCTTCCAATATGCTAGTTTC 329 Query 161319 AACAACTCCCGTTCGTTGCACTTCTTCCTCGCAGCATGGCCTGTTGTCGGTATCTGGTTC 161378 |||||||| ||||| || ||||||||| | || || |||||||| || || ||||||||| Sbjct 328 AACAACTCTCGTTCTTTACACTTCTTCTTGGCTGCTTGGCCTGTAGTAGGAATCTGGTTC 269 Query 161379 ACTGCACTTGGTGTCTCCACCATGGCATTCAACCTGAACGGATTCAACTTCAACCAGTCC 161438 ||||| | ||| | || ||||| |||||||| || || ||||| |||||||| || Sbjct 268 ACTGCTTTAGGTATTAGTACTATGGCTTTCAACCTAAATGGTTTCAATTTCAACCAATCT 209 Query 161439 ATCATGGATGGTCAGGGCAAAGTCCTGAACACCTGGGCTGACGTTCTGAATCGTGCTAAC 161498 | | ||| |||| || || | || || |||||||| | | || || ||||| Sbjct 208 GTAGTTGATAGTCAAGGTCGCGTTATTAATACTTGGGCTGATATCATCAACCGAGCTAAT 149 Query 161499 CTTGGTATGGAAGTAATGCACGAGCGTAATGCTCACAACTTCCCTCTGGATCTCGCTGCT 161558 ||||||||||||||||||||||| ||||||||||||||||||||||| || || |||||| Sbjct 148 CTTGGTATGGAAGTAATGCACGAACGTAATGCTCACAACTTCCCTCTAGACCTAGCTGCT 89 >seq162061 Length=815 Score = 210 bits (232), Expect = 2e-49 Identities = 247/334 (74%), Gaps = 0/334 (0%) Strand=Plus/Plus Query 164191 TCCACGGATCTTTCGCTCTGATCGGTTTCATGCTTCGGCAGTTTGAAATTGCACGTCTTG 164250 ||||||| |||| || || || ||||||||| | || || |||||| |||| || || Sbjct 217 TCCACGGGGCTTTTGCACTAATAGGTTTCATGTTACGCCAATTTGAACTTGCTCGGTCTG 276 Query 164251 TAGGTATCCGTCCGTACAATGCTATTGCGTTCTCTGGTCCGATTGCTGTCTTTGTCAGCG 164310 | | || || || ||||| || | ||||||||||| || || || ||||| | Sbjct 277 TTCAATTGCGGCCTTATAATGCAATCTCATTCTCTGGTCCAATCGCGGTTTTTGTTTCTG 336 Query 164311 TTTTCCTTATGTACCCTCTCGGGCAATCTAGTTGGTTCTTTGCCCCCTCGTTTGGGGTCG 164370 | |||||||| || || || ||||||||| ||||||||||||| || ||||| || | Sbjct 337 TATTCCTTATTTATCCACTGGGGCAATCTGGTTGGTTCTTTGCGCCGAGTTTTGGCGTAG 396 Query 164371 CGGCGATCTTCAGATTCCTCTTGTTCCTCCAAGGTTTCCATAACTGGACACTCAACCCCT 164430 | || || || ||||| || | ||| ||||||| || ||||| ||||| | ||||| | Sbjct 397 CAGCAATATTTCGATTCATCCTTTTCTTCCAAGGATTTCATAATTGGACGTTGAACCCAT 456 Query 164431 TCCATATGATGGGTGTTGCAGGCATCCTTGGTGGTGCTCTTCTCTGTGCTATTCATGGTG 164490 | ||||||||||| ||||| || | | || | ||||| || || ||||||||||| | Sbjct 457 TTCATATGATGGGAGTTGCCGGAGTATTAGGCGCGGCTCTGCTATGCGCTATTCATGGAG 516 Query 164491 CTACCGTAGAGAATACTTTGTTTGAAGATGGTGA 164524 | |||||||| || ||| | ||||| || ||||| Sbjct 517 CGACCGTAGAAAACACTCTATTTGAGGACGGTGA 550 >seq664408 Length=200 Score = 178 bits (196), Expect = 1e-39 Identities = 154/191 (81%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 160956 GTTGCATATTCTGCACCTGTTGCTGCTGCGAGTGCAGTATTCCTCGTCTATCCTTTCGGT 161015 |||||||| || || |||||||| ||||| | ||| || ||| | | || ||| | ||| Sbjct 192 GTTGCATACTCAGCTCCTGTTGCGGCTGCTACTGCTGTTTTCTTGATTTACCCTATTGGT 133 Query 161016 CAAGGTTCTTTCTCTGATGGTATGCCCCTGGGTATCTCTGGTACCTTCAACTTCATGCTT 161075 ||||| ||||||||||||||||| | || || ||||||| |||||||| ||| || Sbjct 132 CAAGGAAGCTTCTCTGATGGTATGCCTTTAGGAATATCTGGTATTTTCAACTTTATGATT 73 Query 161076 GTCTTCCAGGCAGAACACAACATCCTGATGCACCCCTTCCACATGTTGGGTGTTGCTGGT 161135 || ||||||||||| ||||||||||| ||||| || ||||||||||| ||||| |||||| Sbjct 72 GTATTCCAGGCAGAGCACAACATCCTTATGCATCCATTCCACATGTTAGGTGTAGCTGGT 13 Query 161136 GTCTTCGGTGG 161146 || ||||| || Sbjct 12 GTATTCGGCGG 2 >seq597246 Length=243 Score = 152 bits (168), Expect = 6e-32 Identities = 174/231 (75%), Gaps = 2/231 (1%) Strand=Plus/Minus Query 160740 TATGGAAACAACATCATCTCTGGTGCAGTTGTTCCTTCTTCCAACGCAATTGGTCTTCAC 160799 ||||||||||| || ||||||||||| || ||||| |||| || || || | ||| Sbjct 231 TATGGAAACAATATTATCTCTGGTGCTATTATTCCTACTTCGGCGGCGATCGGATTGCAC 172 Query 160800 TTCTACCCCATTTGGGAAGCTGCATCTCTTGATGAATGGCTCTACAATGGTGGTCCTTAC 160859 || ||||| |||||||||||||||||| ||||||| ||| | ||||||||||||||||| Sbjct 171 TTTTACCCAATTTGGGAAGCTGCATCTGTTGATGAGTGGTTATACAATGGTGGTCCTTAT 112 Query 160860 CAACTGGTCGTATTTCACTTCCTGATCGGCATCTTCTGCTACATGGGTCGCGAGTGGGAA 160919 | || | || | |||||| | | || | || || |||||||| ||||||||| Sbjct 111 GAGCTAATTGTTCTACACTTCTTACTTGGTGTAGCTTGTTATATGGGTCGTGAGTGGGAA 52 Query 160920 CTTTCCTACCGCCTCGGCATGCGCCCCTGGATCTGC-GTTGCATATTCTGC 160969 ||| | ||| | || ||||| || ||||| ||| |||||||| || || Sbjct 51 CTTAGTTTCCGTTTGGGTATGCGTCCTTGGAT-TGCTGTTGCATACTCAGC 2 >seq217498 Length=656 Score = 143 bits (158), Expect = 3e-29 Identities = 160/211 (76%), Gaps = 2/211 (1%) Strand=Plus/Plus Query 160572 TTCTGCGAGTGGGTAACTTCTACAAACAATCGTCTTTACGTCGGTTGGTTCGGTGTGCTG 160631 |||||| | ||| ||||| || | || ||||||||| |||| ||||||||||| || Sbjct 321 TTCTGCAACTGGATAACTAGCACTGAAAACCGTCTTTACATCGGATGGTTCGGTGTTTTG 380 Query 160632 ATGATCCCAACTCTGTTGGCAGCAACCGTCTG-CTTTATTACTGCGTTCGTTGCTGCTCC 160690 |||||||| ||| | ||| | |||| | |||| ||||||| || ||| | ||||| || Sbjct 381 ATGATCCCTACTTTATTGACCGCAA-CTTCTGTATTTATTATCGCCTTCATCGCTGCCCC 439 Query 160691 CCCCGTGGACATCGACGGTATCCGTGAACCCGTTGCTGGTTCACTGATGTATGGAAACAA 160750 || || || || || ||||| ||||| || ||| ||||||| | | ||||||||||| Sbjct 440 TCCAGTAGATATTGATGGTATTCGTGAGCCTGTTTCTGGTTCTTTACTTTATGGAAACAA 499 Query 160751 CATCATCTCTGGTGCAGTTGTTCCTTCTTCC 160781 || |||||||||| || ||||| ||||| Sbjct 500 TATTCTCTCTGGTGCTATTATTCCTACTTCC 530 >seq466979 Length=342 Score = 111 bits (122), Expect = 2e-19 Identities = 91/111 (82%), Gaps = 0/111 (0%) Strand=Plus/Minus Query 164553 CCTACTCAAGAGGAAGAGACTTACTCGATGGTCACTGCCAACCGCTTCTGGTCTCAGATT 164612 || ||||||| ||||| ||||| || ||||||||||| ||| |||| ||||| || || Sbjct 228 CCAACTCAAGCTGAAGAAACTTATTCAATGGTCACTGCTAACTGCTTTTGGTCCCAAATC 169 Query 164613 TTTGGTATTGCTTTCAGCAATAAGCGTTGGTTGCACTTCTTTATGCTCTTT 164663 |||||| ||||||| |||||| |||||||| || ||||||||||| ||| Sbjct 168 TTTGGTGTTGCTTTTTCCAATAAACGTTGGTTACATTTCTTTATGCTATTT 118 >seq41969 Length=1890 Score = 109 bits (120), Expect = 6e-19 Identities = 158/222 (71%), Gaps = 1/222 (0%) Strand=Plus/Minus Query 164682 TGGACAAGTTCTATTGGTATCATCGGTCTCGCACTCAATCTTCGTGCTTATGATTTTGTG 164741 |||| ||| ||||||| | | || || || || || | ||||| ||||||||||| Sbjct 576 TGGATGAGTGCTATTGGCGTAGTAGGCCTGGCTCTGAACTTACGTGCCTATGATTTTGTT 517 Query 164742 TCTCAGGAGATTAGAGCAGCAGAGGATCCTGAATTTGAGACGTTCTATACGAAGAACATC 164801 || ||||| || | ||||| || |||| |||||||||||| ||||| || || || || Sbjct 516 TCCCAGGA-ATCCGTGCAGCGGAAGATCGTGAATTTGAGACTTTCTACACCAAAAATATT 458 Query 164802 CTCCTCAATGAAGGACTCCGTGCCTGGATGGCTCCAGTAGACCAGCCACACGAATCGTTT 164861 || | || || || | ||||| |||||||| | || ||||| || ||| || Sbjct 457 CTTTTAAACGAGGGTATTCGTGCGTGGATGGCAGCTCAGGATCAGCCTCATGAAAATCTT 398 Query 164862 GTATTTCCAGAGGAAGTTCTTCCGAGAGGTAACGCACTCTAA 164903 |||| || ||||| ||||| || | || ||||| || ||| Sbjct 397 ATATTCCCTGAGGAGGTTCTACCACGTGGAAACGCTCTTTAA 356 >seq472319 Length=337 Score = 102 bits (112), Expect = 9e-17 Identities = 89/111 (80%), Gaps = 0/111 (0%) Strand=Plus/Minus Query 161234 CAAGTTTGGTCAAGAAGAAGAGACCTACAACATCGTCGCTGCTCATGGTTACTTCGGTCG 161293 ||| ||||||||||| ||||||| || || || || |||||||||||||| || || | Sbjct 337 CAAATTTGGTCAAGAGGAAGAGATTTATAATATTGTGGCTGCTCATGGTTATTTTGGCCA 278 Query 161294 CCTGATCTTCCAATACGCTTCCTTCAACAACTCCCGTTCGTTGCACTTCTT 161344 | ||||||||||| ||| ||||||||||| ||||| || |||||||| Sbjct 277 ATTAATCTTCCAATATGCTAGTTTCAACAACTCTCGTTCTTTACACTTCTT 227 >seq71309 Length=1427 Score = 86.0 bits (94), Expect = 7e-12 Identities = 88/115 (77%), Gaps = 0/115 (0%) Strand=Plus/Plus Query 161231 TTACAAGTTTGGTCAAGAAGAAGAGACCTACAACATCGTCGCTGCTCATGGTTACTTCGG 161290 |||||| ||||||||||| |||||||| || || || || || |||||||| || Sbjct 678 TTACAATTTTGGTCAAGAGGAAGAGACTTATAATATTGTGTTTGTGCATGGTTATTTTTT 737 Query 161291 TCGCCTGATCTTCCAATACGCTTCCTTCAACAACTCCCGTTCGTTGCACTTCTTC 161345 || | ||||||||||| || | ||||||||||| ||||| || ||||| ||| Sbjct 738 CCGATTAATCTTCCAATATGCATGTTTCAACAACTCACGTTCTTTCCACTTTTTC 792 >seq623740 Length=225 Score = 84.2 bits (92), Expect = 2e-11 Identities = 134/190 (71%), Gaps = 8/190 (4%) Strand=Plus/Minus Query 164265 TACAATGCTATTGCGTTCTCTGGTCCGATTGCTGTCTTT--GTCAGCGTTTTCCTTATGT 164322 || ||||| || | |||||| ||| || || || ||| || || |||||||| | Sbjct 189 TATAATGCCATCTCATTCTCTAGTCA-ATCGCGGTTTTTTTGTTTCTGTATTCCTTATTT 131 Query 164323 ACCCTCTCGGG-----CAATCTAGTTGGTTCTTTGCCCCCTCGTTTGGGGTCGCGGCGAT 164377 | || || ||| | || ||||||||||||| || ||||| || || || || Sbjct 130 ATCCACTGGGGTGGGGCGATTCGGTTGGTTCTTTGCGCCGAGTTTTGGCGTAGCAGCAAT 71 Query 164378 CTTCAGATTCCTCTTGTTCCTCCAAGGTTTCCATAACTGGACACTCAACCCCTTCCATAT 164437 || ||||| || | ||| ||||||| || ||||| ||||| | ||||| || ||||| Sbjct 70 ATTTCGATTCATCCTTTTCTTCCAAGGATTTCATAATTGGACGTTGAACCCATTTCATAT 11 Query 164438 GATGGGTGTT 164447 |||||| ||| Sbjct 10 GATGGGAGTT 1 >seq171123 Length=784 Score = 84.2 bits (92), Expect = 2e-11 Identities = 105/143 (73%), Gaps = 2/143 (1%) Strand=Plus/Plus Query 161408 CAACCTGAACGGATTCAACTTCAACCAGTCCATCATGGATG--GTCAGGGCAAAGTCCTG 161465 |||||| || || ||| | || ||||| || | | ||| |||| ||| || | Sbjct 642 CAACCTAAATGGTTTCCATTTTAACCAATCTGTAGTTGATACAGTCAAGGCCGCGTTATT 701 Query 161466 AACACCTGGGCTGACGTTCTGAATCGTGCTAACCTTGGTATGGAAGTAATGCACGAGCGT 161525 || || || | ||| | | || |||||||| |||||||||||||||||||| | || Sbjct 702 AATACTTGAGATGATATCATCAACCGTGCTAATTTTGGTATGGAAGTAATGCACAAACGA 761 Query 161526 AATGCTCACAACTTCCCTCTGGA 161548 |||||||||||||||||||| || Sbjct 762 AATGCTCACAACTTCCCTCTAGA 784 >seq279680 Length=543 Score = 82.4 bits (90), Expect = 8e-11 Identities = 57/65 (88%), Gaps = 0/65 (0%) Strand=Plus/Minus Query 161487 AATCGTGCTAACCTTGGTATGGAAGTAATGCACGAGCGTAATGCTCACAACTTCCCTCTG 161546 || |||||||| |||||||||||||||||||| | || |||||||||||||||||||| Sbjct 488 AACCGTGCTAATTTTGGTATGGAAGTAATGCACAAACGAAATGCTCACAACTTCCCTCTA 429 Query 161547 GATCT 161551 || || Sbjct 428 GACCT 424 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 554670335912000