Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Musa_20acuminata_20subsp._20malaccensis_20[refseq_20GCF_5F000313855.
2_202012-11-14] 7,259 sequences; 472,231,289 total letters
Query= AAMG01000140.1
Length=336
Score E
Sequences producing significant alignments: (Bits) Value
seq1376 102 2e-19
seq5789 73.4 8e-11
>seq1376
Length=180402
Score = 102 bits (112), Expect = 2e-19
Identities = 213/310 (69%), Gaps = 8/310 (3%)
Strand=Plus/Minus
Query 12 ggggggTGAAATAGACCCTGAACCCGCGCGCCTACAAGCGGTCGGAGCCGA--GTGATTC 69
|||| |||||||||| | |||| ||| | || ||||| || |||| || ||||||
Sbjct 85574 GGGGAGTGAAATAGAACATGAAACCGTGAGCTCCCAAGCAGTGGGAGGAGAATGTGATTT 85515
Query 70 GGTGACGGCGTGCCTTTTGCATAATGAGCCTACGAGTTAGTCGTCACCAGCGAGGTTAAG 129
|||| |||||||| ||| | |||||||| ||| | | | | || || |||||||
Sbjct 85514 C-TGACCGCGTGCCTGTTGAAGAATGAGCCGGCGACTCA-TAGGCAGTGGCTTGGTTAAG 85457
Query 130 GGCTTCAGGCCCGTTAGCCGAAGTGAAAGCGAGCCTTAACAGGGCGACGAGTTGGTGGCG 189
|| | ||| ||||| || ||||||||| ||| | ||||||| || ||
Sbjct 85456 GGAACCCA--CCGG-AGCCGTAGCGAAAGCGAGTCTTCATAGGGCGATT-GTCACTGCTT 85401
Query 190 CTAGACGCGAAACCTTGTGATCTACCCACGAGCAGGTTGAAGTCGCGGTAACGCGTGATG 249
| ||| |||| | |||||||| ||| || |||| ||||| ||| | | ||
Sbjct 85400 ATGGACCCGAACCTGGGTGATCTATCCATGACCAGGATGAAGCTTGGGTGAAACTAAGTG 85341
Query 250 GAGGACCGAACCGGTAAACGTTGAAAAGTTTTCGGATGACTCGCGGGTAGGGGTGAAAGG 309
|||| |||||||| | |||||| | | ||||||| | | || ||||||||||| |
Sbjct 85340 GAGGTCCGAACCGACTGATGTTGAAGAATCAGCGGATGAGTTGTGGTTAGGGGTGAAATG 85281
Query 310 CCAATCAAAC 319
||| || |||
Sbjct 85280 CCACTCGAAC 85271
>seq5789
Length=6742
Score = 73.4 bits (80), Expect = 8e-11
Identities = 104/144 (72%), Gaps = 3/144 (2%)
Strand=Plus/Minus
Query 193 GACGCGAAACCTTGTGATCTACCCACGAGCAGGTTGAAGTCGCGGTAACGCGTGA--TGG 250
||| ||||||| |||||| ||| ||||||||||||| | | | || | | |||
Sbjct 4748 GACCCGAAACCGATCGATCTAGCCATGAGCAGGTTGAAGA-GAGCTCACACAGGCCTTGG 4690
Query 251 AGGACCGAACCGGTAAACGTTGAAAAGTTTTCGGATGACTCGCGGGTAGGGGTGAAAGGC 310
||||||||||| | || | ||| | |||||||| | || ||||||||||||||
Sbjct 4689 AGGACCGAACCCACGTATGTGGCAAAATACGGGGATGACTTGTGGCTAGGGGTGAAAGGC 4630
Query 311 CAATCAAACTGGGAAATAGCTCGT 334
||| ||| | ||| |||||| ||
Sbjct 4629 CAACCAAGATCGGATATAGCTGGT 4606
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 972729384448
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |