Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Musa_20acuminata_20subsp._20malaccensis_20[refseq_20GCF_5F000313855.
2_202012-11-14] 7,259 sequences; 472,231,289 total letters
Query= AAMG01000190.1
Length=117
Score E
Sequences producing significant alignments: (Bits) Value
seq4678 134 8e-30
seq4666 134 8e-30
seq600 134 8e-30
seq4275 125 4e-27
seq3867 118 6e-25
seq4736 116 2e-24
seq3082 116 2e-24
seq2905 95.1 7e-18
seq2298 86.0 3e-15
seq10 86.0 3e-15
>seq4678
Length=16778
Score = 134 bits (148), Expect = 8e-30
Identities = 100/117 (85%), Gaps = 0/117 (0%)
Strand=Plus/Minus
Query 1 GAACCCAAAGACTTTGATTTCTCGTAAGGTGCCGAGCGAGTCAAAATGATAACATCGCCC 60
||||||||||||||||||||||| |||||||||| ||||| || |||||| ||
Sbjct 14265 GAACCCAAAGACTTTGATTTCTCATAAGGTGCCGGCGGAGTCCTAAGAGCAACATCCGCC 14206
Query 61 GATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCGTCTTCGA 117
||||||| |||||||| ||||| |||| |||||| ||||||||||||||||||||||
Sbjct 14205 GATCCCTGGTCGGCATCGTTTATGGTTGAGACTAGGACGGTATCTGATCGTCTTCGA 14149
>seq4666
Length=16983
Score = 134 bits (148), Expect = 8e-30
Identities = 100/117 (85%), Gaps = 0/117 (0%)
Strand=Plus/Minus
Query 1 GAACCCAAAGACTTTGATTTCTCGTAAGGTGCCGAGCGAGTCAAAATGATAACATCGCCC 60
||||||||||||||||||||||| |||||||||| ||||| || |||||| ||
Sbjct 3011 GAACCCAAAGACTTTGATTTCTCATAAGGTGCCGGCGGAGTCCTAAGAGCAACATCCGCC 2952
Query 61 GATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCGTCTTCGA 117
||||||| |||||||| ||||| |||| |||||| ||||||||||||||||||||||
Sbjct 2951 GATCCCTGGTCGGCATCGTTTATGGTTGAGACTAGGACGGTATCTGATCGTCTTCGA 2895
>seq600
Length=3765
Score = 134 bits (148), Expect = 8e-30
Identities = 100/117 (85%), Gaps = 0/117 (0%)
Strand=Plus/Plus
Query 1 GAACCCAAAGACTTTGATTTCTCGTAAGGTGCCGAGCGAGTCAAAATGATAACATCGCCC 60
||||||||||||||||||||||| |||||||||| ||||| || |||||| ||
Sbjct 464 GAACCCAAAGACTTTGATTTCTCATAAGGTGCCGGCGGAGTCCTAAGAGCAACATCCGCC 523
Query 61 GATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCGTCTTCGA 117
||||||| |||||||| ||||| |||| |||||| ||||||||||||||||||||||
Sbjct 524 GATCCCTGGTCGGCATCGTTTATGGTTGAGACTAGGACGGTATCTGATCGTCTTCGA 580
>seq4275
Length=21226
Score = 125 bits (138), Expect = 4e-27
Identities = 98/117 (84%), Gaps = 0/117 (0%)
Strand=Plus/Plus
Query 1 GAACCCAAAGACTTTGATTTCTCGTAAGGTGCCGAGCGAGTCAAAATGATAACATCGCCC 60
||||||||||||||||||||||| |||||||||| ||||| || |||||| ||
Sbjct 14427 GAACCCAAAGACTTTGATTTCTCATAAGGTGCCGGCGGAGTCCTAAGAGCAACATCTGCC 14486
Query 61 GATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCGTCTTCGA 117
||||||| ||| |||| ||||| |||| ||||||||| ||||||||||| |||||||
Sbjct 14487 GATCCCTGGTCTGCATCGTTTATGGTTGAGACTACGATGGTATCTGATCATCTTCGA 14543
>seq3867
Length=26241
Score = 118 bits (130), Expect = 6e-25
Identities = 95/115 (83%), Gaps = 0/115 (0%)
Strand=Plus/Plus
Query 1 GAACCCAAAGACTTTGATTTCTCGTAAGGTGCCGAGCGAGTCAAAATGATAACATCGCCC 60
|||| ||||||| |||||||||| |||||||||| ||||| || |||||| |
Sbjct 9988 GAACTCAAAGACCTTGATTTCTCATAAGGTGCCGGCGGAGTCCTAAGAGCAACATCTGTC 10047
Query 61 GATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCGTCTTC 115
|||||||||||||||| ||||| |||| |||||| |||||||||||||| |||||
Sbjct 10048 GATCCCTAGTCGGCATCGTTTATGGTTGAGACTAGGACGGTATCTGATCTTCTTC 10102
>seq4736
Length=15983
Score = 116 bits (128), Expect = 2e-24
Identities = 98/120 (82%), Gaps = 3/120 (3%)
Strand=Plus/Plus
Query 1 GAACCCAAAGACTTTGATTTCTCGTAAGGTGCCGAGCGAGTCAAAATG---ATAACATCG 57
|||| ||||||||||||||||| ||||||| || ||||| || | ||||||
Sbjct 2211 GAACTTAAAGACTTTGATTTCTCATAAGGTGTCGGCGGAGTCCTAAGAGCAACAACATCC 2270
Query 58 CCCGATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCGTCTTCGA 117
||||||||| |||||||| ||||| |||| |||||| ||||||||||||||||||||||
Sbjct 2271 GCCGATCCCTGGTCGGCATCGTTTATGGTTGAGACTAGGACGGTATCTGATCGTCTTCGA 2330
>seq3082
Length=3087
Score = 116 bits (128), Expect = 2e-24
Identities = 98/118 (83%), Gaps = 2/118 (2%)
Strand=Plus/Plus
Query 1 GAACCCAAAGACTTTGATTTCTCGTAAGGTGCCGAGCG-AGTCAAAATGATAACATCGCC 59
|||||||||||| |||||||| |||||||||| ||| |||| || |||||| |
Sbjct 2411 GAACCCAAAGACCATGATTTCTTATAAGGTGCCG-GCGAAGTCCTAAGAGCAACATCCGC 2469
Query 60 CGATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCGTCTTCGA 117
||||||||||||||||| ||||| ||| |||||| ||||||||| ||||||||||||
Sbjct 2470 CGATCCCTAGTCGGCATCGTTTATAGTTGAGACTAGGACGGTATCCGATCGTCTTCGA 2527
>seq2905
Length=45512
Score = 95.1 bits (104), Expect = 7e-18
Identities = 79/97 (81%), Gaps = 0/97 (0%)
Strand=Plus/Minus
Query 1 GAACCCAAAGACTTTGATTTCTCGTAAGGTGCCGAGCGAGTCAAAATGATAACATCGCCC 60
||||||||||||||||||||||| ||||||| || ||||| || |||||| ||
Sbjct 4722 GAACCCAAAGACTTTGATTTCTCATAAGGTGTCGTCGGAGTCTTAAGAGCAACATCCGCC 4663
Query 61 GATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGA 97
||||||| |||||||| ||||| |||| |||||| ||
Sbjct 4662 GATCCCTGGTCGGCATCGTTTATGGTTGAGACTAGGA 4626
>seq2298
Length=78726
Score = 86.0 bits (94), Expect = 3e-15
Identities = 89/117 (76%), Gaps = 0/117 (0%)
Strand=Plus/Plus
Query 1 GAACCCAAAGACTTTGATTTCTCGTAAGGTGCCGAGCGAGTCAAAATGATAACATCGCCC 60
||||||||||||||||||||||| | ||||| | ||||| || |||||| |
Sbjct 40522 GAACCCAAAGACTTTGATTTCTCATTAGGTGTTGGCGGAGTCCTAAGAGCAACATCCGCT 40581
Query 61 GATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCGTCTTCGA 117
||||| | ||| |||| |||| |||| |||||| ||| |||| ||||| |||| ||
Sbjct 40582 GATCCTTGGTCAGCATCATTTATGGTTGAGACTAGGACAGTATATGATCATCTTTGA 40638
>seq10
Length=33665772
Score = 86.0 bits (94), Expect = 3e-15
Identities = 68/82 (83%), Gaps = 0/82 (0%)
Strand=Plus/Plus
Query 1 GAACCCAAAGACTTTGATTTCTCGTAAGGTGCCGAGCGAGTCAAAATGATAACATCGCCC 60
||||||||||||||||||||||| |||||||||| ||||| || |||||| ||
Sbjct 6133984 GAACCCAAAGACTTTGATTTCTCATAAGGTGCCGGCGGAGTCCTAAGAGCAACATCCGCC 6134043
Query 61 GATCCCTAGTCGGCATAGTTTA 82
||||||| |||||||| |||||
Sbjct 6134044 GATCCCTGGTCGGCATCGTTTA 6134065
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 278381054010
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |