Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Musa_20acuminata_20subsp._20malaccensis_20[refseq_20GCF_5F000313855. 2_202012-11-14] 7,259 sequences; 472,231,289 total letters Query= AAMG01000190.1 Length=117 Score E Sequences producing significant alignments: (Bits) Value seq4678 134 8e-30 seq4666 134 8e-30 seq600 134 8e-30 seq4275 125 4e-27 seq3867 118 6e-25 seq4736 116 2e-24 seq3082 116 2e-24 seq2905 95.1 7e-18 seq2298 86.0 3e-15 seq10 86.0 3e-15 >seq4678 Length=16778 Score = 134 bits (148), Expect = 8e-30 Identities = 100/117 (85%), Gaps = 0/117 (0%) Strand=Plus/Minus Query 1 GAACCCAAAGACTTTGATTTCTCGTAAGGTGCCGAGCGAGTCAAAATGATAACATCGCCC 60 ||||||||||||||||||||||| |||||||||| ||||| || |||||| || Sbjct 14265 GAACCCAAAGACTTTGATTTCTCATAAGGTGCCGGCGGAGTCCTAAGAGCAACATCCGCC 14206 Query 61 GATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCGTCTTCGA 117 ||||||| |||||||| ||||| |||| |||||| |||||||||||||||||||||| Sbjct 14205 GATCCCTGGTCGGCATCGTTTATGGTTGAGACTAGGACGGTATCTGATCGTCTTCGA 14149 >seq4666 Length=16983 Score = 134 bits (148), Expect = 8e-30 Identities = 100/117 (85%), Gaps = 0/117 (0%) Strand=Plus/Minus Query 1 GAACCCAAAGACTTTGATTTCTCGTAAGGTGCCGAGCGAGTCAAAATGATAACATCGCCC 60 ||||||||||||||||||||||| |||||||||| ||||| || |||||| || Sbjct 3011 GAACCCAAAGACTTTGATTTCTCATAAGGTGCCGGCGGAGTCCTAAGAGCAACATCCGCC 2952 Query 61 GATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCGTCTTCGA 117 ||||||| |||||||| ||||| |||| |||||| |||||||||||||||||||||| Sbjct 2951 GATCCCTGGTCGGCATCGTTTATGGTTGAGACTAGGACGGTATCTGATCGTCTTCGA 2895 >seq600 Length=3765 Score = 134 bits (148), Expect = 8e-30 Identities = 100/117 (85%), Gaps = 0/117 (0%) Strand=Plus/Plus Query 1 GAACCCAAAGACTTTGATTTCTCGTAAGGTGCCGAGCGAGTCAAAATGATAACATCGCCC 60 ||||||||||||||||||||||| |||||||||| ||||| || |||||| || Sbjct 464 GAACCCAAAGACTTTGATTTCTCATAAGGTGCCGGCGGAGTCCTAAGAGCAACATCCGCC 523 Query 61 GATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCGTCTTCGA 117 ||||||| |||||||| ||||| |||| |||||| |||||||||||||||||||||| Sbjct 524 GATCCCTGGTCGGCATCGTTTATGGTTGAGACTAGGACGGTATCTGATCGTCTTCGA 580 >seq4275 Length=21226 Score = 125 bits (138), Expect = 4e-27 Identities = 98/117 (84%), Gaps = 0/117 (0%) Strand=Plus/Plus Query 1 GAACCCAAAGACTTTGATTTCTCGTAAGGTGCCGAGCGAGTCAAAATGATAACATCGCCC 60 ||||||||||||||||||||||| |||||||||| ||||| || |||||| || Sbjct 14427 GAACCCAAAGACTTTGATTTCTCATAAGGTGCCGGCGGAGTCCTAAGAGCAACATCTGCC 14486 Query 61 GATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCGTCTTCGA 117 ||||||| ||| |||| ||||| |||| ||||||||| ||||||||||| ||||||| Sbjct 14487 GATCCCTGGTCTGCATCGTTTATGGTTGAGACTACGATGGTATCTGATCATCTTCGA 14543 >seq3867 Length=26241 Score = 118 bits (130), Expect = 6e-25 Identities = 95/115 (83%), Gaps = 0/115 (0%) Strand=Plus/Plus Query 1 GAACCCAAAGACTTTGATTTCTCGTAAGGTGCCGAGCGAGTCAAAATGATAACATCGCCC 60 |||| ||||||| |||||||||| |||||||||| ||||| || |||||| | Sbjct 9988 GAACTCAAAGACCTTGATTTCTCATAAGGTGCCGGCGGAGTCCTAAGAGCAACATCTGTC 10047 Query 61 GATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCGTCTTC 115 |||||||||||||||| ||||| |||| |||||| |||||||||||||| ||||| Sbjct 10048 GATCCCTAGTCGGCATCGTTTATGGTTGAGACTAGGACGGTATCTGATCTTCTTC 10102 >seq4736 Length=15983 Score = 116 bits (128), Expect = 2e-24 Identities = 98/120 (82%), Gaps = 3/120 (3%) Strand=Plus/Plus Query 1 GAACCCAAAGACTTTGATTTCTCGTAAGGTGCCGAGCGAGTCAAAATG---ATAACATCG 57 |||| ||||||||||||||||| ||||||| || ||||| || | |||||| Sbjct 2211 GAACTTAAAGACTTTGATTTCTCATAAGGTGTCGGCGGAGTCCTAAGAGCAACAACATCC 2270 Query 58 CCCGATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCGTCTTCGA 117 ||||||||| |||||||| ||||| |||| |||||| |||||||||||||||||||||| Sbjct 2271 GCCGATCCCTGGTCGGCATCGTTTATGGTTGAGACTAGGACGGTATCTGATCGTCTTCGA 2330 >seq3082 Length=3087 Score = 116 bits (128), Expect = 2e-24 Identities = 98/118 (83%), Gaps = 2/118 (2%) Strand=Plus/Plus Query 1 GAACCCAAAGACTTTGATTTCTCGTAAGGTGCCGAGCG-AGTCAAAATGATAACATCGCC 59 |||||||||||| |||||||| |||||||||| ||| |||| || |||||| | Sbjct 2411 GAACCCAAAGACCATGATTTCTTATAAGGTGCCG-GCGAAGTCCTAAGAGCAACATCCGC 2469 Query 60 CGATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCGTCTTCGA 117 ||||||||||||||||| ||||| ||| |||||| ||||||||| |||||||||||| Sbjct 2470 CGATCCCTAGTCGGCATCGTTTATAGTTGAGACTAGGACGGTATCCGATCGTCTTCGA 2527 >seq2905 Length=45512 Score = 95.1 bits (104), Expect = 7e-18 Identities = 79/97 (81%), Gaps = 0/97 (0%) Strand=Plus/Minus Query 1 GAACCCAAAGACTTTGATTTCTCGTAAGGTGCCGAGCGAGTCAAAATGATAACATCGCCC 60 ||||||||||||||||||||||| ||||||| || ||||| || |||||| || Sbjct 4722 GAACCCAAAGACTTTGATTTCTCATAAGGTGTCGTCGGAGTCTTAAGAGCAACATCCGCC 4663 Query 61 GATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGA 97 ||||||| |||||||| ||||| |||| |||||| || Sbjct 4662 GATCCCTGGTCGGCATCGTTTATGGTTGAGACTAGGA 4626 >seq2298 Length=78726 Score = 86.0 bits (94), Expect = 3e-15 Identities = 89/117 (76%), Gaps = 0/117 (0%) Strand=Plus/Plus Query 1 GAACCCAAAGACTTTGATTTCTCGTAAGGTGCCGAGCGAGTCAAAATGATAACATCGCCC 60 ||||||||||||||||||||||| | ||||| | ||||| || |||||| | Sbjct 40522 GAACCCAAAGACTTTGATTTCTCATTAGGTGTTGGCGGAGTCCTAAGAGCAACATCCGCT 40581 Query 61 GATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCGTCTTCGA 117 ||||| | ||| |||| |||| |||| |||||| ||| |||| ||||| |||| || Sbjct 40582 GATCCTTGGTCAGCATCATTTATGGTTGAGACTAGGACAGTATATGATCATCTTTGA 40638 >seq10 Length=33665772 Score = 86.0 bits (94), Expect = 3e-15 Identities = 68/82 (83%), Gaps = 0/82 (0%) Strand=Plus/Plus Query 1 GAACCCAAAGACTTTGATTTCTCGTAAGGTGCCGAGCGAGTCAAAATGATAACATCGCCC 60 ||||||||||||||||||||||| |||||||||| ||||| || |||||| || Sbjct 6133984 GAACCCAAAGACTTTGATTTCTCATAAGGTGCCGGCGGAGTCCTAAGAGCAACATCCGCC 6134043 Query 61 GATCCCTAGTCGGCATAGTTTA 82 ||||||| |||||||| ||||| Sbjct 6134044 GATCCCTGGTCGGCATCGTTTA 6134065 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 278381054010