Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Musa_20acuminata_20subsp._20malaccensis_20[refseq_20GCF_5F000313855. 2_202012-11-14] 7,259 sequences; 472,231,289 total letters Query= AAMG01000278.1 Length=318 Score E Sequences producing significant alignments: (Bits) Value seq4678 230 4e-58 seq2905 230 4e-58 seq600 230 4e-58 seq4666 224 2e-56 seq4736 221 2e-55 seq4275 219 8e-55 seq10 215 9e-54 seq3082 147 4e-33 seq6 147 4e-33 seq11 120 6e-25 seq3867 96.9 6e-18 >seq4678 Length=16778 Score = 230 bits (254), Expect = 4e-58 Identities = 202/248 (81%), Gaps = 3/248 (1%) Strand=Plus/Plus Query 72 CTTTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCTTTGCTC-GAATACATTAGCAT 130 || |||||||||| ||||||||||| |||||||| ||| ||||| | ||||||| |||| Sbjct 13902 CTGTTACTTTGAAGAAATTAGAGTGCTCAAAGCAAGCCCATGCTCTGGATACATTTGCAT 13961 Query 131 GGAATAATAGAATAGGACGTGCGGTTCTATTTTGTTGGTTTCTAGGACCGCCGTAATGAT 190 || |||| | | |||| | |||| ||||| |||||| | ||| || |||||||| Sbjct 13962 GGGATAACATCACAGGATTT-CGGTCCTATTGTGTTGGCCTTCGGGATCGGAGTAATGAT 14020 Query 191 TAATAGGGATAGTCGGGGGTGTCAGTATTCAATTGTCAGAGGTGAAATTCTTGGATTTAT 250 ||| ||||| ||||||||| | ||||| || |||||||||||||||||||||||||| Sbjct 14021 TAAGAGGGACAGTCGGGGGCATTCGTATTTCATAGTCAGAGGTGAAATTCTTGGATTTAT 14080 Query 251 TGAAGACTAACTACTGCGAAAGCGTTCACCAAGGATGTTTTCATTAATCAGTGAACGAAA 310 ||||| ||| ||||||||||| || |||||||||||||||||||||| |||||||| Sbjct 14081 GAAAGACGAACCACTGCGAAAGCATTTGCCAAGGATGTTTTCATTAATCA-AGAACGAAA 14139 Query 311 GTTAGGGG 318 ||| |||| Sbjct 14140 GTTGGGGG 14147 >seq2905 Length=45512 Score = 230 bits (254), Expect = 4e-58 Identities = 202/248 (81%), Gaps = 3/248 (1%) Strand=Plus/Plus Query 72 CTTTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCTTTGCTCGA-ATACATTAGCAT 130 || |||||||||| ||||||||||| |||||||| ||| |||| | |||||||||||| Sbjct 4300 CTGTTACTTTGAAGAAATTAGAGTGCTCAAAGCAAGCCCACGCTCTAGATACATTAGCAT 4359 Query 131 GGAATAATAGAATAGGACGTGCGGTTCTATTTTGTTGGTTTCTAGGACCGCCGTAATGAT 190 || |||| | | |||| | |||| ||||| |||||| | ||| || |||||||| Sbjct 4360 GGGATAACATCACAGGATTT-CGGTCCTATTGTGTTGGCCTTCGGGATCGGAGTAATGAT 4418 Query 191 TAATAGGGATAGTCGGGGGTGTCAGTATTCAATTGTCAGAGGTGAAATTCTTGGATTTAT 250 ||| ||||| ||||||||| | ||||| || |||||||||||||||||||||||||| Sbjct 4419 TAAGAGGGACAGTCGGGGGCATTCGTATTTCATAGTCAGAGGTGAAATTCTTGGATTTAT 4478 Query 251 TGAAGACTAACTACTGCGAAAGCGTTCACCAAGGATGTTTTCATTAATCAGTGAACGAAA 310 ||||| ||| ||||||||||| || |||||||||||||||||||||| |||||||| Sbjct 4479 GAAAGACGAACCACTGCGAAAGCATTTGCCAAGGATGTTTTCATTAATCA-AGAACGAAA 4537 Query 311 GTTAGGGG 318 ||| |||| Sbjct 4538 GTTGGGGG 4545 >seq600 Length=3765 Score = 230 bits (254), Expect = 4e-58 Identities = 244/316 (77%), Gaps = 8/316 (3%) Strand=Plus/Minus Query 9 CCGGCCGGGCCTTTCCTTCTG---GGGATCCG--CATGCCCTTCACTGGGTGTGCCGGGG 63 |||| || || | ||||||| | ||| || | || |||| ||||| | | || | Sbjct 895 CCGGTCGTCCCATCCCTTCTGTCGGCGATGCGTGCCTGGCCTTAACTGGCCGGGTCGTGC 836 Query 64 AGCCAGGACTTTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCTTTGCTC-GAATAC 122 || | || |||||||||| ||||||||||| |||||||| ||| |||| | |||| Sbjct 835 CTCCGGCGCTGTTACTTTGAAGAAATTAGAGTGCTCAAAGCAAGCCCACGCTCTGGATAC 776 Query 123 ATTAGCATGGAATAATAGAATAGGACGTGCGGTTCTATTTTGTTGGTTTCTAGGACCGCC 182 |||||||||| |||| | | |||| | |||| ||||| |||||| | ||| || Sbjct 775 ATTAGCATGGGATAACATCACAGGATTT-CGGTCCTATTGTGTTGGCCTTCGGGATCGGA 717 Query 183 GTAATGATTAATAGGGATAGTCGGGGGTGTCAGTATTCAATTGTCAGAGGTGAAATTCTT 242 ||||||||||| ||||| ||||||||| | ||||| || |||||||||||||||||| Sbjct 716 GTAATGATTAAGAGGGACAGTCGGGGGCATTCGTATTTCATAGTCAGAGGTGAAATTCTT 657 Query 243 GGATTTATTGAAGACTAACTACTGCGAAAGCGTTCACCAAGGATGTTTTCATTAATCAGT 302 |||||||| ||||| ||| ||||||||||| || |||||||||||||||||||||| Sbjct 656 GGATTTATGAAAGACGAACCACTGCGAAAGCATTTGCCAAGGATGTTTTCATTAATCA-A 598 Query 303 GAACGAAAGTTAGGGG 318 ||||||||||| |||| Sbjct 597 GAACGAAAGTTGGGGG 582 >seq4666 Length=16983 Score = 224 bits (248), Expect = 2e-56 Identities = 201/248 (81%), Gaps = 3/248 (1%) Strand=Plus/Plus Query 72 CTTTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCTTTGCTC-GAATACATTAGCAT 130 || |||||||||| ||||||||||| |||||| | ||| |||| | |||||||||||| Sbjct 2648 CTGTTACTTTGAAGAAATTAGAGTGCTCAAAGTAAGCCCACGCTCTGGATACATTAGCAT 2707 Query 131 GGAATAATAGAATAGGACGTGCGGTTCTATTTTGTTGGTTTCTAGGACCGCCGTAATGAT 190 || |||| | | |||| | | || ||||| |||||| | ||| || |||||||| Sbjct 2708 GGGATAACATCACAGGATTT-CAGTCCTATTGTGTTGGCCTTCGGGATCGGAGTAATGAT 2766 Query 191 TAATAGGGATAGTCGGGGGTGTCAGTATTCAATTGTCAGAGGTGAAATTCTTGGATTTAT 250 ||| ||||||||||||||| | ||||| || |||||||||||||||||||||||||| Sbjct 2767 TAAGAGGGATAGTCGGGGGCATTCGTATTTCATAGTCAGAGGTGAAATTCTTGGATTTAT 2826 Query 251 TGAAGACTAACTACTGCGAAAGCGTTCACCAAGGATGTTTTCATTAATCAGTGAACGAAA 310 ||||| ||| ||||||||||| || |||||||||||||||||||||| |||||||| Sbjct 2827 GAAAGACGAACCACTGCGAAAGCATTTGCCAAGGATGTTTTCATTAATCA-AGAACGAAA 2885 Query 311 GTTAGGGG 318 ||| |||| Sbjct 2886 GTTGGGGG 2893 >seq4736 Length=15983 Score = 221 bits (244), Expect = 2e-55 Identities = 242/316 (77%), Gaps = 8/316 (3%) Strand=Plus/Minus Query 9 CCGGCCGGGCCTTTCCTTCTG---GGGATCCG--CATGCCCTTCACTGGGTGTGCCGGGG 63 |||| || || | ||||||| | ||| || | || |||| ||||| | | || | Sbjct 2645 CCGGTCGTCCCATCCCTTCTGTCGGCGATGCGTGCCTGGCCTTAACTGGCCGGGTCGTGC 2586 Query 64 AGCCAGGACTTTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCTTTGCTC-GAATAC 122 || | || |||||||||| ||||||||||| |||||||| |||| ||||| | |||| Sbjct 2585 CTCCGGCGCTGTTACTTTGAAGAAATTAGAGTGCTCAAAGCAAGCCTATGCTCTGGATAC 2526 Query 123 ATTAGCATGGAATAATAGAATAGGACGTGCGGTTCTATTTTGTTGGTTTCTAGGACCGCC 182 |||||| ||| |||| | | |||| | |||| ||||| |||||| | ||| || Sbjct 2525 ATTAGCGTGGGATAACATCACAGGATTT-CGGTCCTATTGTGTTGGCCTTCGGGATCGGA 2467 Query 183 GTAATGATTAATAGGGATAGTCGGGGGTGTCAGTATTCAATTGTCAGAGGTGAAATTCTT 242 ||||||||||| ||||| ||||||||| | ||||| || |||||||||||||||||| Sbjct 2466 GTAATGATTAAGAGGGACAGTCGGGGGCATTCGTATTTCATAGTCAGAGGTGAAATTCTT 2407 Query 243 GGATTTATTGAAGACTAACTACTGCGAAAGCGTTCACCAAGGATGTTTTCATTAATCAGT 302 ||||||| | ||| ||| ||| ||||||| || |||||||||||||||||||||| Sbjct 2406 TGATTTATGAAGGACGAACCACTACGAAAGCATTTGCCAAGGATGTTTTCATTAATCA-A 2348 Query 303 GAACGAAAGTTAGGGG 318 ||||||||||| |||| Sbjct 2347 GAACGAAAGTTGGGGG 2332 >seq4275 Length=21226 Score = 219 bits (242), Expect = 8e-55 Identities = 198/245 (81%), Gaps = 3/245 (1%) Strand=Plus/Minus Query 75 TTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCTTTGCTC-GAATACATTAGCATGGA 133 |||||||||| ||||||||||| |||||||| ||| |||| | |||||||||||||| Sbjct 14787 TTACTTTGAAGAAATTAGAGTGCTCAAAGCAAGCCCACGCTCTGGATACATTAGCATGGG 14728 Query 134 ATAATAGAATAGGACGTGCGGTTCTATTTTGTTGGTTTCTAGGACCGCCGTAATGATTAA 193 |||| | | |||| | |||| ||||| |||||| | ||| | |||| |||||| Sbjct 14727 ATAACATTACAGGATTT-CGGTCCTATTGTGTTGGCCTTCGGGATCAGAGTAACGATTAA 14669 Query 194 TAGGGATAGTCGGGGGTGTCAGTATTCAATTGTCAGAGGTGAAATTCTTGGATTTATTGA 253 ||||| ||||||||| | ||||| || |||||||||||||||||||||||||| | Sbjct 14668 GAGGGACAGTCGGGGGCATTCGTATTTCATAGTCAGAGGTGAAATTCTTGGATTTATGAA 14609 Query 254 AGACTAACTACTGCGAAAGCGTTCACCAAGGATGTTTTCATTAATCAGTGAACGAAAGTT 313 |||| ||| ||||||||||| || |||||||||||||||||||||| ||||||||||| Sbjct 14608 AGACGAACCACTGCGAAAGCATTTGCCAAGGATGTTTTCATTAATCA-AGAACGAAAGTT 14550 Query 314 AGGGG 318 |||| Sbjct 14549 GGGGG 14545 >seq10 Length=33665772 Score = 215 bits (238), Expect = 9e-54 Identities = 197/245 (80%), Gaps = 3/245 (1%) Strand=Plus/Minus Query 75 TTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCTTTGCTC-GAATACATTAGCATGGA 133 |||||||||| ||||||||||| |||||||| ||| |||| | |||||||||||||| Sbjct 6134556 TTACTTTGAAGAAATTAGAGTGCTCAAAGCAAGCCCACGCTCTGGATACATTAGCATGGG 6134497 Query 134 ATAATAGAATAGGACGTGCGGTTCTATTTTGTTGGTTTCTAGGACCGCCGTAATGATTAA 193 |||| | | |||| | |||| ||||| |||||| | ||| || ||||||||||| Sbjct 6134496 ATAACATCACAGGATTT-CGGTCCTATTGTGTTGGCCTTCGGGATCGGAGTAATGATTAA 6134438 Query 194 TAGGGATAGTCGGGGGTGTCAGTATTCAATTGTCAGAGGTGAAATTCTTGGATTTATTGA 253 ||||| ||||||||| | ||||| || |||||||||||||||||||||||||| | Sbjct 6134437 GAGGGACAGTCGGGGGCATTCGTATTTCATAGTCAGAGGTGAAATTCTTGGATTTATGAA 6134378 Query 254 AGACTAACTACTGCGAAAGCGTTCACCAAGGATGTTTTCATTAATCAGTGAACGAAAGTT 313 ||| ||| ||||||||||| || ||||||||||||| |||||||| |||| |||||| Sbjct 6134377 AGATGAACCACTGCGAAAGCATTTGCCAAGGATGTTTTTATTAATCA-AGAACAAAAGTT 6134319 Query 314 AGGGG 318 |||| Sbjct 6134318 GGGGG 6134314 >seq3082 Length=3087 Score = 147 bits (162), Expect = 4e-33 Identities = 115/136 (85%), Gaps = 1/136 (1%) Strand=Plus/Minus Query 183 GTAATGATTAATAGGGATAGTCGGGGGTGTCAGTATTCAATTGTCAGAGGTGAAATTCTT 242 ||||||||||| ||||| ||||||||| | ||||| || |||||||||||||||||| Sbjct 2663 GTAATGATTAAGAGGGACAGTCGGGGGCATTCGTATTTCATAGTCAGAGGTGAAATTCTT 2604 Query 243 GGATTTATTGAAGACTAACTACTGCGAAAGCGTTCACCAAGGATGTTTTCATTAATCAGT 302 |||||||| ||||| ||| ||||||||||| || ||||||| ||||||||||||||| Sbjct 2603 GGATTTATGAAAGACGAACCACTGCGAAAGCATTTACCAAGGGTGTTTTCATTAATCA-A 2545 Query 303 GAACGAAAGTTAGGGG 318 ||| ||| ||||||| Sbjct 2544 AAACAAAACTTAGGGG 2529 >seq6 Length=34899179 Score = 147 bits (162), Expect = 4e-33 Identities = 163/215 (76%), Gaps = 2/215 (1%) Strand=Plus/Minus Query 72 CTTTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCTTTGCTC-GAATACATTAGCAT 130 || |||||| || ||||||||||| |||||||| || |||| | |||||||||||| Sbjct 3943556 CTGTTACTTAAAAGAAATTAGAGTGCTCAAAGCAAACCCACGCTCTGGATACATTAGCAT 3943497 Query 131 GGAATAATAGAATAGGACGTGCGGTTCTATTTTGTTGGTTTCTAGGACCGCCGTAATGAT 190 || |||| | | | || | || | ||||| |||||| | ||| || |||||||| Sbjct 3943496 GGGATAACATCACAAGATTT-CGATCCTATTGTGTTGGCCTTCGGGATCGGAGTAATGAT 3943438 Query 191 TAATAGGGATAGTCGGGGGTGTCAGTATTCAATTGTCAGAGGTGAAATTCTTGGATTTAT 250 ||| | ||||||||||||| | ||||| || ||||||||||||||| || |||||| Sbjct 3943437 TAAGAAGGATAGTCGGGGGCATTCGTATTTCATAGTCAGAGGTGAAATTATTATATTTAT 3943378 Query 251 TGAAGACTAACTACTGCGAAAGCGTTCACCAAGGA 285 |||| ||| ||||||||||| || ||||||| Sbjct 3943377 GAAAGATGAACCACTGCGAAAGCATTTGCCAAGGA 3943343 >seq11 Length=25514024 Score = 120 bits (132), Expect = 6e-25 Identities = 131/170 (77%), Gaps = 3/170 (2%) Strand=Plus/Plus Query 71 ACTTTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCTTTGCTC-GAATACATTAGCA 129 ||| || ||||||| ||||||||||| |||||||| ||| |||| | || || ||||| Sbjct 22430547 ACTGTTGCTTTGAAGAAATTAGAGTGCTCAAAGCAAGCCCACGCTCTGGATCCAATAGCA 22430606 Query 130 TGGAATAATAGAATAGGACGTGCGGTTCTATTTTGTTGGTTTCTAGGACCGCCGTAATGA 189 | | |||| | |||||| | || | ||||| |||||| | |||| || ||||||| Sbjct 22430607 TAGGATAACACCATAGGA-TTTCGATCCTATTGTGTTGGCCTTCAGGATCGGAGTAATGA 22430665 Query 190 TTAATAGGGATAGTCGGGGGTGTCAGTATTCAATTGTCAGAGGTGAAATT 239 |||| ||||| ||| |||| | || ||||| || ||||||||||||||| Sbjct 22430666 TTAAGAGGGACAGTTGGGGCT-TCCGTATTTCATGGTCAGAGGTGAAATT 22430714 >seq3867 Length=26241 Score = 96.9 bits (106), Expect = 6e-18 Identities = 73/85 (86%), Gaps = 1/85 (1%) Strand=Plus/Minus Query 234 GAAATTCTTGGATTTATTGAAGACTAACTACTGCGAAAGCGTTCACCAAGGATGTTTTCA 293 ||||||||||||||||| ||||| ||||||||| ||||| || |||| |||||||||| Sbjct 10189 GAAATTCTTGGATTTATGAAAGACGAACTACTGCAAAAGCATTTGCCAAAGATGTTTTCA 10130 Query 294 TTAATCAGTGAACGAAAGTTAGGGG 318 ||||||| ||| ||||||| |||| Sbjct 10129 TTAATCA-AGAATGAAAGTTGGGGG 10106 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 915133565632