Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Musa_20acuminata_20subsp._20malaccensis_20[refseq_20GCF_5F000313855. 2_202012-11-14] 7,259 sequences; 472,231,289 total letters Query= AAMG01000538.1 Length=248 Score E Sequences producing significant alignments: (Bits) Value seq5789 127 3e-27 seq1376 116 5e-24 >seq5789 Length=6742 Score = 127 bits (140), Expect = 3e-27 Identities = 177/244 (73%), Gaps = 8/244 (3%) Strand=Plus/Plus Query 6 CCTTCCATCACCGGGCAGGCGTCAGTCCGTATACATCGACTTACCGTCTTCGCACGGACC 65 ||||| | ||||||||||| ||||| | ||||||||| ||||| ||| ||| | || Sbjct 3308 CCTTCTAGCACCGGGCAGGTGTCAGACTCTATACATCGTGTTACCA-CTTAGCAGAGTCC 3366 Query 66 TGTGTTTTTAGTAAACAGTCGCTTCCCTCTATTCTCTGCGACCACCACCAGCTCAACACG 125 |||||||||| ||||||||||| ||| || | | ||| || | | ||| | Sbjct 3367 TGTGTTTTTAAGAAACAGTCGCTACCCCCTGGTATGTGCCACTTTCCTAA--TCATAGTG 3424 Query 126 TCGTTCACCAGCAGTGGCACCCCTTCTCCCGAAGTTACGGGGCCATTTTGCCGAATTCCT 185 || | || |||||||||||||||||||||||||| ||||||||||| ||||| Sbjct 3425 AGATTTAGGAGA----GCACCCCTTCTCCCGAAGTTACGGGGTCATTTTGCCGAGTTCCT 3480 Query 186 TAACCACAGTTCACCCGA-ACGCCTTAGTATTCTCTACCTGACCACCTGTGTCGGTTTAC 244 | || |||| | ||| |||| ||||| || ||| || |||||||||||||| Sbjct 3481 TCGACATGGTTCTCTCGACGCGCCCTAGTAGACTATACTTGTGAACCTGTGTCGGTTTGG 3540 Query 245 GGTA 248 |||| Sbjct 3541 GGTA 3544 >seq1376 Length=180402 Score = 116 bits (128), Expect = 5e-24 Identities = 159/222 (72%), Gaps = 20/222 (9%) Strand=Plus/Plus Query 27 TCAGTCCGTATACATCGACTTACCGTCTTCGCACGGACCTGTGTTTTTAGTAAACAGTCG 86 |||| || |||||| | ||||| | ||| || ||||||||||||| ||||||||||| Sbjct 84240 TCAGCCCCCATACATGGTCTTAC-GACTTTGCGGAGACCTGTGTTTTTGGTAAACAGTCG 84298 Query 87 CTTCCCTCTATTCTCTGCGACCACCACCAGCTCAACACGTCGTTCACCAGCAGTGGCACC 146 | || || |||||||| || | || || || ||||| Sbjct 84299 CCCGGGCCTGGTCACTGCGACCCCCT-------------TTGTG----AGGAG--GCACC 84339 Query 147 CCTTCTCCCGAAGTTACGGGGCCATTTTGCCGAATTCCTTAACCACAGTTCACCCGAACG 206 |||||||||||||||||||||| |||||||||| ||||||| | |||| | || | Sbjct 84340 CCTTCTCCCGAAGTTACGGGGCTATTTTGCCGAGTTCCTTAGAGAGAGTTGTCTCGCGCC 84399 Query 207 CCTTAGTATTCTCTACCTGACCACCTGTGTCGGTTTACGGTA 248 ||| ||||||||||||| |||||||||||||||| |||| Sbjct 84400 CCTAGGTATTCTCTACCTACCCACCTGTGTCGGTTTCGGGTA 84441 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 694351168707