Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Musa_20acuminata_20subsp._20malaccensis_20[refseq_20GCF_5F000313855.
2_202012-11-14] 7,259 sequences; 472,231,289 total letters
Query= AAMG01000538.1
Length=248
Score E
Sequences producing significant alignments: (Bits) Value
seq5789 127 3e-27
seq1376 116 5e-24
>seq5789
Length=6742
Score = 127 bits (140), Expect = 3e-27
Identities = 177/244 (73%), Gaps = 8/244 (3%)
Strand=Plus/Plus
Query 6 CCTTCCATCACCGGGCAGGCGTCAGTCCGTATACATCGACTTACCGTCTTCGCACGGACC 65
||||| | ||||||||||| ||||| | ||||||||| ||||| ||| ||| | ||
Sbjct 3308 CCTTCTAGCACCGGGCAGGTGTCAGACTCTATACATCGTGTTACCA-CTTAGCAGAGTCC 3366
Query 66 TGTGTTTTTAGTAAACAGTCGCTTCCCTCTATTCTCTGCGACCACCACCAGCTCAACACG 125
|||||||||| ||||||||||| ||| || | | ||| || | | ||| |
Sbjct 3367 TGTGTTTTTAAGAAACAGTCGCTACCCCCTGGTATGTGCCACTTTCCTAA--TCATAGTG 3424
Query 126 TCGTTCACCAGCAGTGGCACCCCTTCTCCCGAAGTTACGGGGCCATTTTGCCGAATTCCT 185
|| | || |||||||||||||||||||||||||| ||||||||||| |||||
Sbjct 3425 AGATTTAGGAGA----GCACCCCTTCTCCCGAAGTTACGGGGTCATTTTGCCGAGTTCCT 3480
Query 186 TAACCACAGTTCACCCGA-ACGCCTTAGTATTCTCTACCTGACCACCTGTGTCGGTTTAC 244
| || |||| | ||| |||| ||||| || ||| || ||||||||||||||
Sbjct 3481 TCGACATGGTTCTCTCGACGCGCCCTAGTAGACTATACTTGTGAACCTGTGTCGGTTTGG 3540
Query 245 GGTA 248
||||
Sbjct 3541 GGTA 3544
>seq1376
Length=180402
Score = 116 bits (128), Expect = 5e-24
Identities = 159/222 (72%), Gaps = 20/222 (9%)
Strand=Plus/Plus
Query 27 TCAGTCCGTATACATCGACTTACCGTCTTCGCACGGACCTGTGTTTTTAGTAAACAGTCG 86
|||| || |||||| | ||||| | ||| || ||||||||||||| |||||||||||
Sbjct 84240 TCAGCCCCCATACATGGTCTTAC-GACTTTGCGGAGACCTGTGTTTTTGGTAAACAGTCG 84298
Query 87 CTTCCCTCTATTCTCTGCGACCACCACCAGCTCAACACGTCGTTCACCAGCAGTGGCACC 146
| || || |||||||| || | || || || |||||
Sbjct 84299 CCCGGGCCTGGTCACTGCGACCCCCT-------------TTGTG----AGGAG--GCACC 84339
Query 147 CCTTCTCCCGAAGTTACGGGGCCATTTTGCCGAATTCCTTAACCACAGTTCACCCGAACG 206
|||||||||||||||||||||| |||||||||| ||||||| | |||| | || |
Sbjct 84340 CCTTCTCCCGAAGTTACGGGGCTATTTTGCCGAGTTCCTTAGAGAGAGTTGTCTCGCGCC 84399
Query 207 CCTTAGTATTCTCTACCTGACCACCTGTGTCGGTTTACGGTA 248
||| ||||||||||||| |||||||||||||||| ||||
Sbjct 84400 CCTAGGTATTCTCTACCTACCCACCTGTGTCGGTTTCGGGTA 84441
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 694351168707
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |