Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Musa_20acuminata_20subsp._20malaccensis_20[refseq_20GCF_5F000313855.
2_202012-11-14] 7,259 sequences; 472,231,289 total letters
Query= AAMG01000636.1
Length=426
Score E
Sequences producing significant alignments: (Bits) Value
seq1376 239 1e-60
seq5789 219 1e-54
seq3 113 1e-22
seq1039 105 2e-20
seq6 80.6 7e-13
>seq1376
Length=180402
Score = 239 bits (264), Expect = 1e-60
Identities = 308/429 (72%), Gaps = 31/429 (7%)
Strand=Plus/Plus
Query 2 GCGGATACACTGCATCTTCACAGCGATTTCAATTTCACTGAGTCTCGGGTGGAGACAGCG 61
|||| || | |||||||||||| || || ||||||| ||| ||| ||||||| |
Sbjct 84022 GCGGGTAGTCCGCATCTTCACAGACATGTCTATTTCACCGAGCCTCTCTCCGAGACAGTG 84081
Query 62 CCGCCATCGTTACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCT 121
|| ||||||||||| ||||||| |||||||||||||||||||||||||||||||||||
Sbjct 84082 CCCAGATCGTTACGCCTTTCGTGCGGGTCGGAACTTACCCGACAAGGAATTTCGCTACCT 84141
Query 122 TAGGACCGTTATTGTTACGGCCGCCGTTTACCGGGGCTTCGATCAAGAGCT----TCGCG 177
|||||||||||| ||||||||||||||| |||||||||||| || ||| | |
Sbjct 84142 TAGGACCGTTATAGTTACGGCCGCCGTTCACCGGGGCTTCGGTCGCCGGCTCCCCTGTCA 84201
Query 178 TTAGCTAACCCCATCAATTAACCTTCCGGCACCGGGCAGGCGTCACACCCTATACGTCCA 237
| || | ||| | || |||||||| ||| ||| ||| ||| |||| |
Sbjct 84202 TCAGGTCACCAACTTCCTTGACCTTCCGACAC----TAGGTATCAGCCCCCATACATGGT 84257
Query 238 CTTTCGTGTTTGCAGAGTGCTGTGTTTTTAATAAACAGTCGCAGCGGCCTGGTATCTTCG 297
||| || ||||| ||| |||||||||| ||||||||||| |||||||| || ||
Sbjct 84258 CTTACGACTTTGCGGAGACCTGTGTTTTTGGTAAACAGTCGCCCGGGCCTGGTCACTGCG 84317
Query 298 ACCGGCATGAGCTTACGGAGCAAGTCCTTCACCCTCACCGGCGCACCTTCTCCCGAAGTT 357
||| ||| ||| | ||| | |||||||||||||||
Sbjct 84318 ACC------CCCTTTGTGAGGA-----------------GGCACCCCTTCTCCCGAAGTT 84354
Query 358 ACGGTGCCTTTTTGCCTAGTTCCTTCCCCCGAGTTCTCTCAAGCGCCTTGGTATTCTCTA 417
|||| || ||||||| |||||||| ||||| |||| || ||| |||||||||||
Sbjct 84355 ACGGGGCTATTTTGCCGAGTTCCTTAGAGAGAGTTGTCTCGCGCCCCTAGGTATTCTCTA 84414
Query 418 CCCAACCAC 426
|| | ||||
Sbjct 84415 CCTACCCAC 84423
>seq5789
Length=6742
Score = 219 bits (242), Expect = 1e-54
Identities = 298/413 (72%), Gaps = 17/413 (4%)
Strand=Plus/Plus
Query 7 TACACTGCATCTTCACAGCGATTTCAATTTCACTGAGTCTCGGGTGGAGACAGCGCCGCC 66
||| | |||||||||| | || ||| ||||||| | ||| | |||||||||| ||
Sbjct 3122 TACTCCGCATCTTCACGGAGAATTCCATTTCACCGGGTCCATGTCGGAGACAGCGGGGCA 3181
Query 67 ATCGTTACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGA 126
||||||| |||||||||||||||| ||||| ||||||||||||||||||||||||||
Sbjct 3182 GTCGTTACACCATTCGTGCAGGTCGCTACTTATGCGACAAGGAATTTCGCTACCTTAGGA 3241
Query 127 CCGTTATTGTTACGGCCGCCGTTTACCGGGGCTTCGATCAAGAGCTTCGCGTTAGCTAAC 186
| |||| ||||| ||||||||||||| ||||||| || | ||||| ||| ||
Sbjct 3242 CAGTTAGAGTTACTGCCGCCGTTTACCAGGGCTTCCATTCAAAGCTT---ATTA---CAC 3295
Query 187 CCCATCAATTAACCTTCCGGCACCGGGCAGGCGTCACACCCTATACGTCCACTTTCGTGT 246
|| |||||| |||||||||||| |||| || |||||| || || | |
Sbjct 3296 TTTGTCTTCCGACCTTCTAGCACCGGGCAGGTGTCAGACTCTATACATCGTGTTACCACT 3355
Query 247 TTGCAGAGTGCTGTGTTTTTAATAAACAGTCGCAGCGGCCTGGTATCTTCGACCGGCATG 306
| ||||||| |||||||||||| |||||||||| | |||||||| | | || | |
Sbjct 3356 TAGCAGAGTCCTGTGTTTTTAAGAAACAGTCGCTACCCCCTGGTATGTGCCACTTTCCTA 3415
Query 307 AGCTTACGGAGCAAGTCCTTCACCCTCACCGGCGCACCTTCTCCCGAAGTTACGGTGCCT 366
| | || ||| || | || | ||||||||||||||||||| | |
Sbjct 3416 ATCATAGTGAG------ATTTA----GGAGAGCACCCCTTCTCCCGAAGTTACGGGGTCA 3465
Query 367 TTTTGCCTAGTTCCTTCCCCCGAGTTCTCTC-AAGCGCCTTGGTATTCTCTAC 418
||||||| ||||||||| | |||||||| | ||||| | ||| || |||
Sbjct 3466 TTTTGCCGAGTTCCTTCGACATGGTTCTCTCGACGCGCCCTAGTAGACTATAC 3518
>seq3
Length=30470407
Score = 113 bits (124), Expect = 1e-22
Identities = 118/155 (76%), Gaps = 0/155 (0%)
Strand=Plus/Plus
Query 12 TGCATCTTCACAGCGATTTCAATTTCACTGAGTCTCGGGTGGAGACAGCGCCGCCATCGT 71
|||||||||||| || || ||||||| | ||| | |||| || | |||||
Sbjct 20934992 TGCATCTTCACATATATGTCTATTTCACCAATCCTCTCTTCGAGATAGTACTTAGATCGT 20935051
Query 72 TACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTT 131
|||| | || ||| ||||| |||||||| |||||||||||||||||||||||||| ||
Sbjct 20935052 TACGTCTTTTGTGTAGGTCAAAACTTACCAAACAAGGAATTTCGCTACCTTAGGACCATT 20935111
Query 132 ATTGTTACGGCCGCCGTTTACCGGGGCTTCGATCA 166
|| ||||| ||| || | ||||||||||||||
Sbjct 20935112 ATAATTACGATCGCTATTCATCGGGGCTTCGATCA 20935146
>seq1039
Length=575991
Score = 105 bits (116), Expect = 2e-20
Identities = 192/281 (68%), Gaps = 4/281 (1%)
Strand=Plus/Minus
Query 14 CATCTTCACAGCGATTTCAATTTCACTGAGTCTCGGGTGGAGACAGCGCCGCCATCGTTA 73
|||||||||| || || ||| ||| ||| ||| ||| || || |||||||
Sbjct 88469 CATCTTCACAAACATGTCTATTACACCGAGCCTCTATCTTAGATAGTTCCCAGATCGTTA 88410
Query 74 CGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTAT 133
||| || |||| ||||||| ||||||||| || || | || |||||| |||||| |||
Sbjct 88409 TGCCTTTTGTGCGGGTCGGACCTTACCCGAAAAAGAGTATCACTACCTAAGGACCACTAT 88350
Query 134 TGTTACGGCCGCCGTTTACCGGGGCTTCGATCAAGAGCT----TCGCGTTAGCTAACCCC 189
||||||||||||| | || | |||||| ||| ||| | | |||| | |||
Sbjct 88349 AGTTACGGCCGCCGCTCACGGAGGCTTCAATCGCTGGCTCCCCTATCATTAGGTCACCAA 88290
Query 190 ATCAATTAACCTTCCGGCACCGGGCAGGCGTCACACCCTATACGTCCACTTTCGTGTTTG 249
| || |||||| |||| |||||| |||| ||| || | | ||| || ||||
Sbjct 88289 CTTCCTTGACCTTCTAGCACTAGGCAGGTGTCAGCCCCCATGCATGGCCTTACGACTTTG 88230
Query 250 CAGAGTGCTGTGTTTTTAATAAACAGTCGCAGCGGCCTGGT 290
|| || ||||| ||| |||| | || | |||||||
Sbjct 88229 CAAAGACTTGTGTCTTTGGTAAATAATCACCCGAGCCTGGT 88189
>seq6
Length=34899179
Score = 80.6 bits (88), Expect = 7e-13
Identities = 141/204 (69%), Gaps = 5/204 (2%)
Strand=Plus/Plus
Query 67 ATCGTTACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGA 126
||||||| ||| || || |||| || ||||||||||| ||||||| |||||||| ||
Sbjct 429784 ATCGTTATGCCTTTTATGTGGGTCAAAATTTACCCGACAAAGAATTTCACTACCTTATGA 429843
Query 127 CCGTTATTGTTACGGCCGCCGTTTACCGGGGCTTCGATCAAGAGCT----TCGCGTTAGC 182
|| |||| |||| | | | || ||| |||||||| || |||| | | | ||
Sbjct 429844 CCATTATAGTTATAGTCACTATTCACCCGGGCTTCGGTCGTCAGCTCCCCTATCATCAGG 429903
Query 183 TAACCCCATCAATTAACCTTCCGGCACCGGGCAGGCGTCACACCCTATACGTCCACTTTC 242
| ||| | |||||||| || ||| |||| |||| | | | ||| | ||| |
Sbjct 429904 TCACCAACTTCCTTAACCTTTCGACACTAGGCAAGCGTTA-GCTCCGTACATGGTCTTAC 429962
Query 243 GTGTTTGCAGAGTGCTGTGTTTTT 266
| |||||| || ||||||||||
Sbjct 429963 GATTTTGCAAAGACCTGTGTTTTT 429986
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1260708478528
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |