Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Musa_20acuminata_20subsp._20malaccensis_20[refseq_20GCF_5F000313855. 2_202012-11-14] 7,259 sequences; 472,231,289 total letters Query= AAMG01000636.1 Length=426 Score E Sequences producing significant alignments: (Bits) Value seq1376 239 1e-60 seq5789 219 1e-54 seq3 113 1e-22 seq1039 105 2e-20 seq6 80.6 7e-13 >seq1376 Length=180402 Score = 239 bits (264), Expect = 1e-60 Identities = 308/429 (72%), Gaps = 31/429 (7%) Strand=Plus/Plus Query 2 GCGGATACACTGCATCTTCACAGCGATTTCAATTTCACTGAGTCTCGGGTGGAGACAGCG 61 |||| || | |||||||||||| || || ||||||| ||| ||| ||||||| | Sbjct 84022 GCGGGTAGTCCGCATCTTCACAGACATGTCTATTTCACCGAGCCTCTCTCCGAGACAGTG 84081 Query 62 CCGCCATCGTTACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCT 121 || ||||||||||| ||||||| ||||||||||||||||||||||||||||||||||| Sbjct 84082 CCCAGATCGTTACGCCTTTCGTGCGGGTCGGAACTTACCCGACAAGGAATTTCGCTACCT 84141 Query 122 TAGGACCGTTATTGTTACGGCCGCCGTTTACCGGGGCTTCGATCAAGAGCT----TCGCG 177 |||||||||||| ||||||||||||||| |||||||||||| || ||| | | Sbjct 84142 TAGGACCGTTATAGTTACGGCCGCCGTTCACCGGGGCTTCGGTCGCCGGCTCCCCTGTCA 84201 Query 178 TTAGCTAACCCCATCAATTAACCTTCCGGCACCGGGCAGGCGTCACACCCTATACGTCCA 237 | || | ||| | || |||||||| ||| ||| ||| ||| |||| | Sbjct 84202 TCAGGTCACCAACTTCCTTGACCTTCCGACAC----TAGGTATCAGCCCCCATACATGGT 84257 Query 238 CTTTCGTGTTTGCAGAGTGCTGTGTTTTTAATAAACAGTCGCAGCGGCCTGGTATCTTCG 297 ||| || ||||| ||| |||||||||| ||||||||||| |||||||| || || Sbjct 84258 CTTACGACTTTGCGGAGACCTGTGTTTTTGGTAAACAGTCGCCCGGGCCTGGTCACTGCG 84317 Query 298 ACCGGCATGAGCTTACGGAGCAAGTCCTTCACCCTCACCGGCGCACCTTCTCCCGAAGTT 357 ||| ||| ||| | ||| | ||||||||||||||| Sbjct 84318 ACC------CCCTTTGTGAGGA-----------------GGCACCCCTTCTCCCGAAGTT 84354 Query 358 ACGGTGCCTTTTTGCCTAGTTCCTTCCCCCGAGTTCTCTCAAGCGCCTTGGTATTCTCTA 417 |||| || ||||||| |||||||| ||||| |||| || ||| ||||||||||| Sbjct 84355 ACGGGGCTATTTTGCCGAGTTCCTTAGAGAGAGTTGTCTCGCGCCCCTAGGTATTCTCTA 84414 Query 418 CCCAACCAC 426 || | |||| Sbjct 84415 CCTACCCAC 84423 >seq5789 Length=6742 Score = 219 bits (242), Expect = 1e-54 Identities = 298/413 (72%), Gaps = 17/413 (4%) Strand=Plus/Plus Query 7 TACACTGCATCTTCACAGCGATTTCAATTTCACTGAGTCTCGGGTGGAGACAGCGCCGCC 66 ||| | |||||||||| | || ||| ||||||| | ||| | |||||||||| || Sbjct 3122 TACTCCGCATCTTCACGGAGAATTCCATTTCACCGGGTCCATGTCGGAGACAGCGGGGCA 3181 Query 67 ATCGTTACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGA 126 ||||||| |||||||||||||||| ||||| |||||||||||||||||||||||||| Sbjct 3182 GTCGTTACACCATTCGTGCAGGTCGCTACTTATGCGACAAGGAATTTCGCTACCTTAGGA 3241 Query 127 CCGTTATTGTTACGGCCGCCGTTTACCGGGGCTTCGATCAAGAGCTTCGCGTTAGCTAAC 186 | |||| ||||| ||||||||||||| ||||||| || | ||||| ||| || Sbjct 3242 CAGTTAGAGTTACTGCCGCCGTTTACCAGGGCTTCCATTCAAAGCTT---ATTA---CAC 3295 Query 187 CCCATCAATTAACCTTCCGGCACCGGGCAGGCGTCACACCCTATACGTCCACTTTCGTGT 246 || |||||| |||||||||||| |||| || |||||| || || | | Sbjct 3296 TTTGTCTTCCGACCTTCTAGCACCGGGCAGGTGTCAGACTCTATACATCGTGTTACCACT 3355 Query 247 TTGCAGAGTGCTGTGTTTTTAATAAACAGTCGCAGCGGCCTGGTATCTTCGACCGGCATG 306 | ||||||| |||||||||||| |||||||||| | |||||||| | | || | | Sbjct 3356 TAGCAGAGTCCTGTGTTTTTAAGAAACAGTCGCTACCCCCTGGTATGTGCCACTTTCCTA 3415 Query 307 AGCTTACGGAGCAAGTCCTTCACCCTCACCGGCGCACCTTCTCCCGAAGTTACGGTGCCT 366 | | || ||| || | || | ||||||||||||||||||| | | Sbjct 3416 ATCATAGTGAG------ATTTA----GGAGAGCACCCCTTCTCCCGAAGTTACGGGGTCA 3465 Query 367 TTTTGCCTAGTTCCTTCCCCCGAGTTCTCTC-AAGCGCCTTGGTATTCTCTAC 418 ||||||| ||||||||| | |||||||| | ||||| | ||| || ||| Sbjct 3466 TTTTGCCGAGTTCCTTCGACATGGTTCTCTCGACGCGCCCTAGTAGACTATAC 3518 >seq3 Length=30470407 Score = 113 bits (124), Expect = 1e-22 Identities = 118/155 (76%), Gaps = 0/155 (0%) Strand=Plus/Plus Query 12 TGCATCTTCACAGCGATTTCAATTTCACTGAGTCTCGGGTGGAGACAGCGCCGCCATCGT 71 |||||||||||| || || ||||||| | ||| | |||| || | ||||| Sbjct 20934992 TGCATCTTCACATATATGTCTATTTCACCAATCCTCTCTTCGAGATAGTACTTAGATCGT 20935051 Query 72 TACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTT 131 |||| | || ||| ||||| |||||||| |||||||||||||||||||||||||| || Sbjct 20935052 TACGTCTTTTGTGTAGGTCAAAACTTACCAAACAAGGAATTTCGCTACCTTAGGACCATT 20935111 Query 132 ATTGTTACGGCCGCCGTTTACCGGGGCTTCGATCA 166 || ||||| ||| || | |||||||||||||| Sbjct 20935112 ATAATTACGATCGCTATTCATCGGGGCTTCGATCA 20935146 >seq1039 Length=575991 Score = 105 bits (116), Expect = 2e-20 Identities = 192/281 (68%), Gaps = 4/281 (1%) Strand=Plus/Minus Query 14 CATCTTCACAGCGATTTCAATTTCACTGAGTCTCGGGTGGAGACAGCGCCGCCATCGTTA 73 |||||||||| || || ||| ||| ||| ||| ||| || || ||||||| Sbjct 88469 CATCTTCACAAACATGTCTATTACACCGAGCCTCTATCTTAGATAGTTCCCAGATCGTTA 88410 Query 74 CGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTAT 133 ||| || |||| ||||||| ||||||||| || || | || |||||| |||||| ||| Sbjct 88409 TGCCTTTTGTGCGGGTCGGACCTTACCCGAAAAAGAGTATCACTACCTAAGGACCACTAT 88350 Query 134 TGTTACGGCCGCCGTTTACCGGGGCTTCGATCAAGAGCT----TCGCGTTAGCTAACCCC 189 ||||||||||||| | || | |||||| ||| ||| | | |||| | ||| Sbjct 88349 AGTTACGGCCGCCGCTCACGGAGGCTTCAATCGCTGGCTCCCCTATCATTAGGTCACCAA 88290 Query 190 ATCAATTAACCTTCCGGCACCGGGCAGGCGTCACACCCTATACGTCCACTTTCGTGTTTG 249 | || |||||| |||| |||||| |||| ||| || | | ||| || |||| Sbjct 88289 CTTCCTTGACCTTCTAGCACTAGGCAGGTGTCAGCCCCCATGCATGGCCTTACGACTTTG 88230 Query 250 CAGAGTGCTGTGTTTTTAATAAACAGTCGCAGCGGCCTGGT 290 || || ||||| ||| |||| | || | ||||||| Sbjct 88229 CAAAGACTTGTGTCTTTGGTAAATAATCACCCGAGCCTGGT 88189 >seq6 Length=34899179 Score = 80.6 bits (88), Expect = 7e-13 Identities = 141/204 (69%), Gaps = 5/204 (2%) Strand=Plus/Plus Query 67 ATCGTTACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGA 126 ||||||| ||| || || |||| || ||||||||||| ||||||| |||||||| || Sbjct 429784 ATCGTTATGCCTTTTATGTGGGTCAAAATTTACCCGACAAAGAATTTCACTACCTTATGA 429843 Query 127 CCGTTATTGTTACGGCCGCCGTTTACCGGGGCTTCGATCAAGAGCT----TCGCGTTAGC 182 || |||| |||| | | | || ||| |||||||| || |||| | | | || Sbjct 429844 CCATTATAGTTATAGTCACTATTCACCCGGGCTTCGGTCGTCAGCTCCCCTATCATCAGG 429903 Query 183 TAACCCCATCAATTAACCTTCCGGCACCGGGCAGGCGTCACACCCTATACGTCCACTTTC 242 | ||| | |||||||| || ||| |||| |||| | | | ||| | ||| | Sbjct 429904 TCACCAACTTCCTTAACCTTTCGACACTAGGCAAGCGTTA-GCTCCGTACATGGTCTTAC 429962 Query 243 GTGTTTGCAGAGTGCTGTGTTTTT 266 | |||||| || |||||||||| Sbjct 429963 GATTTTGCAAAGACCTGTGTTTTT 429986 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1260708478528