Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Musa_20acuminata_20subsp._20malaccensis_20[refseq_20GCF_5F000313855. 2_202012-11-14] 7,259 sequences; 472,231,289 total letters Query= AAMG01000753.1 Length=364 Score E Sequences producing significant alignments: (Bits) Value seq1376 306 8e-81 seq5789 239 1e-60 seq1039 170 4e-40 seq3 163 6e-38 seq6 120 6e-25 seq11 114 3e-23 >seq1376 Length=180402 Score = 306 bits (338), Expect = 8e-81 Identities = 282/353 (80%), Gaps = 12/353 (3%) Strand=Plus/Plus Query 7 GCATCTTCACCGGGATTACAATTTCACCGAGTCTATTGTTGAGACAGTGCCCAAATCGTT 66 |||||||||| | || | ||||||||||| || | ||||||||||||| |||||| Sbjct 84033 GCATCTTCACAGACATGTCTATTTCACCGAGCCTCTCTCCGAGACAGTGCCCAGATCGTT 84092 Query 67 ACGCCTTTCGTGCGGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTA 126 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 84093 ACGCCTTTCGTGCGGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTA 84152 Query 127 TAGTTACGGCCGCCGTTTACTGGGGCTTAAGTTCACTGCTTCGAT-TGCTC---TAACAG 182 ||||||||||||||||| || ||||||| || | ||| | | | || | || Sbjct 84153 TAGTTACGGCCGCCGTTCACCGGGGCTTCGGTCGCCGGCTCCCCTGTCATCAGGTCACCA 84212 Query 183 ATCCCCTTAACCTTCCAGCACCGGGCAGGCGTCAGCTCCTATACATCGTCTTGCGACTTA 242 | |||| ||||||| ||| ||| ||||| || |||||| ||||| |||||| Sbjct 84213 ACTTCCTTGACCTTCCGACAC----TAGGTATCAGCCCCCATACATGGTCTTACGACTTT 84268 Query 243 GCAGAAACCTGTGTTTTTGGTAAACAGTCGCTTGGGCCTATTCTCTGCG---GCCTGTCA 299 || || ||||||||||||||||||||||||| |||||| || ||||| ||| | Sbjct 84269 GCGGAGACCTGTGTTTTTGGTAAACAGTCGCCCGGGCCTGGTCACTGCGACCCCCTTTGT 84328 Query 300 TAGACAGGCACCCCTTCTCCCTAAGTTACGGGGTCATTTTGCCGAGTTCCTTA 352 || |||||||||||||||| ||||||||||| |||||||||||||||||| Sbjct 84329 GAG-GAGGCACCCCTTCTCCCGAAGTTACGGGGCTATTTTGCCGAGTTCCTTA 84380 >seq5789 Length=6742 Score = 239 bits (264), Expect = 1e-60 Identities = 280/379 (74%), Gaps = 21/379 (6%) Strand=Plus/Plus Query 1 TACCCGGCATCTTCACCGGGATTACAATTTCACCGAGTCTATTGTTGAGACAGTGCCCAA 60 ||| | |||||||||| | || | | ||||||||| ||| || ||||||| | | Sbjct 3122 TACTCCGCATCTTCACGGAGAATTCCATTTCACCGGGTCCATGTCGGAGACAGCGGGGCA 3181 Query 61 ATCGTTACGCCTTTCGTGCGGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGA 120 ||||||| || ||||||| ||||| ||||| |||||||||||||||||||||||||| Sbjct 3182 GTCGTTACACCATTCGTGCAGGTCGCTACTTATGCGACAAGGAATTTCGCTACCTTAGGA 3241 Query 121 CCGTTATAGTTACGGCCGCCGTTTACTGGGGCTTAAGTTCACTGCTTCGATTGCTCTAAC 180 | |||| |||||| |||||||||||| |||||| |||| |||| ||| | || Sbjct 3242 CAGTTAGAGTTACTGCCGCCGTTTACCAGGGCTTCCATTCAAAGCTT--ATTACACTTTG 3299 Query 181 AGATCCCCTTAACCTTCCAGCACCGGGCAGGCGTCAGCTCCTATACATCGTCTTGCGACT 240 ||| |||||| ||||||||||||| ||||| ||||||||||| || | ||| Sbjct 3300 TCTTCC----GACCTTCTAGCACCGGGCAGGTGTCAGACTCTATACATCGTGTTACCACT 3355 Query 241 TAGCAGAAACCTGTGTTTTTGGTAAACAGTCGCTTGGGCCTATTCTCTGCGGCCT----- 295 ||||||| ||||||||||| ||||||||||| ||| | | ||| | | Sbjct 3356 TAGCAGAGTCCTGTGTTTTTAAGAAACAGTCGCTACCCCCTGGTATGTGCCACTTTCCTA 3415 Query 296 GTCATAGACAG----------GCACCCCTTCTCCCTAAGTTACGGGGTCATTTTGCCGAG 345 |||||| || |||||||||||||| |||||||||||||||||||||||| Sbjct 3416 ATCATAGTGAGATTTAGGAGAGCACCCCTTCTCCCGAAGTTACGGGGTCATTTTGCCGAG 3475 Query 346 TTCCTTAACAATAGTTCTC 364 |||||| || |||||| Sbjct 3476 TTCCTTCGACATGGTTCTC 3494 >seq1039 Length=575991 Score = 170 bits (188), Expect = 4e-40 Identities = 240/332 (72%), Gaps = 9/332 (3%) Strand=Plus/Minus Query 8 CATCTTCACCGGGATTACAATTTCACCGAGTCTATTGTTGAGACAGTGCCCAAATCGTTA 67 ||||||||| || | ||| ||||||| || | | ||| ||| |||| ||||||| Sbjct 88469 CATCTTCACAAACATGTCTATTACACCGAGCCTCTATCTTAGATAGTTCCCAGATCGTTA 88410 Query 68 CGCCTTTCGTGCGGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTAT 127 |||||| |||||||||||| ||||||||| || || | || |||||| |||||| ||| Sbjct 88409 TGCCTTTTGTGCGGGTCGGACCTTACCCGAAAAAGAGTATCACTACCTAAGGACCACTAT 88350 Query 128 AGTTACGGCCGCCGTTTACTGGGGCTTAAGTTCACT-GCTTCGATTGCTCTA----ACAG 182 |||||||||||||| | || | ||||| | || || ||| | | | || || Sbjct 88349 AGTTACGGCCGCCGCTCACGGAGGCTTCA-ATCGCTGGCTCCCCTATCATTAGGTCACCA 88291 Query 183 ATCCCCTTAACCTTCCAGCACCGGGCAGGCGTCAGCTCCTATACATCGTCTTGCGACTTA 242 | |||| |||||| ||||| |||||| |||||| || || ||| | ||| |||||| Sbjct 88290 ACTTCCTTGACCTTCTAGCACTAGGCAGGTGTCAGCCCCCATGCATGGCCTTACGACTTT 88231 Query 243 GCAGAAACCTGTGTTTTTGGTAAACAGTCGCTTGGGCCTATT--CTCTGCGGCCTGTCAT 300 ||| | || ||||| ||||||||| | || | | |||| | ||| | ||| | Sbjct 88230 GCAAAGACTTGTGTCTTTGGTAAATAATCACCCGAGCCTGGTCACTCAACCACCTTTGTG 88171 Query 301 AGACAGGCACCCCTTCTCCCTAAGTTACGGGG 332 || || ||||||||||||| |||||| |||| Sbjct 88170 AG-GAGACACCCCTTCTCCCCAAGTTATGGGG 88140 >seq3 Length=30470407 Score = 163 bits (180), Expect = 6e-38 Identities = 253/357 (71%), Gaps = 16/357 (4%) Strand=Plus/Plus Query 7 GCATCTTCACCGGGATTACAATTTCACCGAGTCTATTGTTGAGACAGTGCCCAAATCGTT 66 |||||||||| || | |||||||| | || | | |||| ||| | | |||||| Sbjct 20934993 GCATCTTCACATATATGTCTATTTCACCAATCCTCTCTTCGAGATAGTACTTAGATCGTT 20935052 Query 67 ACGCCTTTCGTGCGGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTA 126 ||| |||| ||| |||| |||||||| |||||||||||||||||||||||||| ||| Sbjct 20935053 ACGTCTTTTGTGTAGGTCAAAACTTACCAAACAAGGAATTTCGCTACCTTAGGACCATTA 20935112 Query 127 TAGTTACGGCCGCCGTTTACTGGGGCTTAAGTTCACTGCTTCGATTGCTCT-AACAGATC 185 || ||||| ||| || | ||||||| | ||||| ||| | || | | || || Sbjct 20935113 TAATTACGATCGCTATTCATCGGGGCTT-CGATCACTAGTTC---TCCTATCATCAAGTC 20935168 Query 186 -------CCCTTAACCTTCCAGCACCGGGCAGGCGTCAGCTCCTATACATCGTCTTGCGA 238 ||| |||||||| ||| || |||||||||| || || || ||||| | Sbjct 20935169 ACTAACTTCCTGAACCTTCCGACACTTGGTAGGCGTCAGCCCCCATTTATGGTCTTATAA 20935228 Query 239 CTTAGCAGAAACCTGTGTTTTTGGTAAACAGTCGCTTGGGCCTATTCTCTGCG---GCCT 295 ||| | || |||| |||||||||||| |||||| | | ||| || || || ||| Sbjct 20935229 CTTTGTGGAGACCTATGTTTTTGGTAACCAGTCGTCTTGCCCTTGTCACTACGACCCCCT 20935288 Query 296 GTCATAGACAGGCACCCCTTCTCCCTAAGTTACGGGGTCATTTTGCCGAGTTCCTTA 352 | || ||||| |||||||||| ||||||| || |||||| |||||||||| Sbjct 20935289 TTGTGAG-GAGGCAACCCTTCTCCCAAAGTTACATGGCTATTTTGTTGAGTTCCTTA 20935344 Score = 84.2 bits (92), Expect = 5e-14 Identities = 80/100 (80%), Gaps = 3/100 (3%) Strand=Plus/Plus Query 37 GTCTATTG--TTGAGACAGTGCCCAAATCGTTACGCCTTTCGTGCGGGTCGGAACTTACC 94 ||||||| ||||| |||||||| ||| ||||||| || |||| |||| |||||| Sbjct 27590256 GTCTATTTCTTTGAGGTAGTGCCCACATCATTACGCCCTTA-TGCGAGTCGAAACTTATT 27590314 Query 95 CGACAAGGAATTTCGCTACCTTAGGACCGTTATAGTTACG 134 || || ||||| |||||||||||||| ||||||||||| Sbjct 27590315 TGATAATAAATTTTGCTACCTTAGGACCATTATAGTTACG 27590354 Score = 80.6 bits (88), Expect = 6e-13 Identities = 47/49 (96%), Gaps = 0/49 (0%) Strand=Plus/Minus Query 47 GAGACAGTGCCCAAATCGTTACGCCTTTCGTGCGGGTCGGAACTTACCC 95 ||||||||||||||||| |||| |||||||||||||||||||||||||| Sbjct 4499148 GAGACAGTGCCCAAATCATTACACCTTTCGTGCGGGTCGGAACTTACCC 4499100 >seq6 Length=34899179 Score = 120 bits (132), Expect = 6e-25 Identities = 160/219 (73%), Gaps = 5/219 (2%) Strand=Plus/Plus Query 48 AGACAGTGCCCAAATCGTTACGCCTTTCGTGCGGGTCGGAACTTACCCGACAAGGAATTT 107 ||| ||||| || ||||||| |||||| || ||||| || ||||||||||| |||||| Sbjct 429771 AGAAAGTGCTCAGATCGTTATGCCTTTTATGTGGGTCAAAATTTACCCGACAAAGAATTT 429830 Query 108 CGCTACCTTAGGACCGTTATAGTTACGGCCGCCGTTTACTGGGGCTTAAGTTCACTGCTT 167 | |||||||| |||| ||||||||| | | | || || |||||| || | ||| Sbjct 429831 CACTACCTTATGACCATTATAGTTATAGTCACTATTCACCCGGGCTTCGGTCGTCAGCTC 429890 Query 168 CGAT-TGCTC---TAACAGATCCCCTTAACCTTCCAGCACCGGGCAGGCGTCAGCTCCTA 223 | | | || | || | |||||||||| | ||| |||| |||| |||||| Sbjct 429891 CCCTATCATCAGGTCACCAACTTCCTTAACCTTTCGACACTAGGCAAGCGTTAGCTCC-G 429949 Query 224 TACATCGTCTTGCGACTTAGCAGAAACCTGTGTTTTTGG 262 ||||| ||||| ||| || ||| | |||||||||||||| Sbjct 429950 TACATGGTCTTACGATTTTGCAAAGACCTGTGTTTTTGG 429988 >seq11 Length=25514024 Score = 114 bits (126), Expect = 3e-23 Identities = 210/310 (68%), Gaps = 41/310 (13%) Strand=Plus/Minus Query 47 GAGACAGTGCCCAAATCGTTACGCCTTTCGTGCGGGTCGGAACTTACCCGACAAGGAATT 106 |||||| || ||| || |||| |||||| ||| || || ||||| || |||||||| Sbjct 24606003 GAGACAATGTCCAGATTGTTATGCCTTTTGTGTGGATCATAACTT----GATAAGGAATT 24605948 Query 107 TCGCTACCTTAGGACCGTTATAGTTACGGCCGCCGTTTACTGGGGCTTAAGTTCACTGCT 166 ||| ||||||||||| |||||||| | | |||| || ||| ||| ||| Sbjct 24605947 TCGATACCTTAGGACTATTATAGTTGCAGTCGCCCTTCACTAAGGC--------ACT--- 24605899 Query 167 TCGATTGCTCTAACAGATCCCCTTAACCTTCCA--GCACCGGGCAGGCGTCAGCTCCTAT 224 ||||| | |||||| |||| || | ||||| || || Sbjct 24605898 -------------------CCCTTGATCTTCCATGGCACTAGGACAACATCAGCCCCCAT 24605858 Query 225 ACATCGTCTTGCGACTTAGCAGAAACCTGTGTTTTTGGTAAACAGTCGCTTGGGCCTATT 284 | || |||| ||||| ||| |||||| ||||||||||||| || | |||||||| | Sbjct 24605857 ATATGGTCT---GACTTTGCAACGACCTGTCTTTTTGGTAAACAATCACCTGGGCCTAGT 24605801 Query 285 CTCTGCGGCCTG-TC-ATAGACAGGCACCCCTTCTCCCTAAGTTACGGGGTCATTTTGCC 342 | | | || || ||| |||||||||||||||| | |||| |||| |||||| | Sbjct 24605800 CATTACAACCCCCTCTATAAGGAGGCACCCCTTCTCCCGAGGTTAAGGGGCTATTTTGTC 24605741 Query 343 GAGTTCCTTA 352 |||||||||| Sbjct 24605740 GAGTTCCTTA 24605731 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1062322880384