Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Musa_20acuminata_20subsp._20malaccensis_20[refseq_20GCF_5F000313855. 2_202012-11-14] 7,259 sequences; 472,231,289 total letters Query= AAMG01000811.1 Length=502 Score E Sequences producing significant alignments: (Bits) Value seq7 376 7e-102 seq1035 210 7e-52 seq11 98.7 3e-18 seq4275 77.0 1e-11 >seq7 Length=28617404 Score = 376 bits (416), Expect = 7e-102 Identities = 376/484 (78%), Gaps = 9/484 (2%) Strand=Plus/Plus Query 15 TGAAACTCAAAGGAATTGACGGGGACCCGCACAAGCGGTGGAGCATGTGGTTTAATTCGA 74 ||| ||||||||||||||| |||| ||||||||||||||||||||||||||||||||||| Sbjct 6713461 TGACACTCAAAGGAATTGATGGGGGCCCGCACAAGCGGTGGAGCATGTGGTTTAATTCGA 6713520 Query 75 AGCAACGCGAAGAACCTTACCAAATCTTGACATCCTCTGACCCCTCTAGAGATAGAGGTT 134 |||| |||||||||||||||| |||||||| | ||| ||||| || | ||||| Sbjct 6713521 TGCAAAGCGAAGAACCTTACCAGGGCTTGACATGCCGTGAATCCTCTTGAAAGAGAGGGG 6713580 Query 135 TCCCCTTCGGGGGACAGAGTGACAGGTGATGCATGGTTGTCGTCAGCTCGTGTCGTGAGA 194 | || || || | || ||||||| ||||||| ||||||||||||||| ||| || Sbjct 6713581 TGCCTTTGGGAATGCGGAC--ACAGGTGGTGCATGGCTGTCGTCAGCTCGTGCCGTAAGG 6713638 Query 195 TGTTGGGTTAAGTCCCGCAACGAGCGCAACCCTTAAGCTTAGTTGCCATCATTAAGTTGG 254 ||||||||||||||||||||||||||||||||| | |||||||||| |||| |||| | Sbjct 6713639 TGTTGGGTTAAGTCCCGCAACGAGCGCAACCCTCGTGTTTAGTTGCCACCATTGAGTTTG 6713698 Query 255 GCACTCTAAGTTGACTGCCGGTGACAAACCGGAGGAAGGTGGGGACGACGTCAAATCATC 314 | || || | | || ||||| ||| || ||||||||||||||||| |||||||| ||||| Sbjct 6713699 GAACCCTGAATAGAGTGCCGATGATAAGCCGGAGGAAGGTGGGGATGACGTCAAGTCATC 6713758 Query 315 ATGCCCCTTATGATTTGGGCTACACACGTGCTACAATGGACAATACAAAGGGCAGCGAAA 374 |||||||||||| ||||| ||| |||||||||||| | ||||||| || | Sbjct 6713759 ATGCCCCTTATGCCCTGGGC--GACATGTGCTACAATGGTCGGGACAAAGGATCGCAATC 6713816 Query 375 CCGCGAGGTCAAGCAAATCCCATAAAGTTGTTCTCAGTTCGGATTGTAGTCTGCAACTCG 434 | | ||| ||| || |||| ||| | || ||||||||||| | ||| |||||| Sbjct 6713817 CTACAAGGGTGAGCTAACCCCAAAAACCCATCCTTAGTTCGGATTGCAAGCTGTAACTCG 6713876 Query 435 ACTATATGAAGCTGGAATCGCTAGTAATCGTAGATCAGC---ATGCTACGGTGAATACGT 491 || ||||||| | |||||||| | ||| ||||| ||| || |||||| || Sbjct 6713877 CCTGCATGAAGCCGAAATCGCTATTTCTCGCTATTCAGCCATATGGTA--GTGAATTTGT 6713934 Query 492 TCCC 495 |||| Sbjct 6713935 TCCC 6713938 >seq1035 Length=594915 Score = 210 bits (232), Expect = 7e-52 Identities = 189/236 (80%), Gaps = 1/236 (0%) Strand=Plus/Minus Query 267 GACTGCCGGTGACAAACCGGAGGAAGGTGGGGACGACGTCAAATCATCATGCCCCTTATG 326 ||||||| |||| | || ||||||||||||||| |||||||| ||| |||| |||| ||| Sbjct 1101 GACTGCCAGTGAAATACTGGAGGAAGGTGGGGATGACGTCAAGTCAGCATGGCCCTCATG 1042 Query 327 ATTTGGGCTACACACGTGCTACAATGGACAATACAAAGGGCAGCGAAACCGCGAGGTCAA 386 ||||| |||||||||||||||||| | ||||| ||| ||| | | | ||| | Sbjct 1041 GGCTGGGCCACACACGTGCTACAATGGCAATTACAATGGGAAGCAAGGCAGTAAGGCTGA 982 Query 387 GCAAATCCCATAAAGTTGTTCTCAGTTCGGATTGTAGTCTGCAACTCGACTATATGAAGC 446 || ||||| | |||| | ||||||||||||||| ||||||||||| | |||||| Sbjct 981 GCGAATCC-AGAAAGATTGCCTCAGTTCGGATTGTTCTCTGCAACTCGGGAACATGAAGT 923 Query 447 TGGAATCGCTAGTAATCGTAGATCAGCATGCTACGGTGAATACGTTCCCGCTCCCT 502 |||||||||||||||||| ||||||||||||| ||||||||| || |||| |||| Sbjct 922 TGGAATCGCTAGTAATCGCAGATCAGCATGCTGCGGTGAATATGTACCCGGGCCCT 867 Score = 168 bits (186), Expect = 2e-39 Identities = 177/232 (76%), Gaps = 17/232 (7%) Strand=Plus/Minus Query 16 GAAACTCAAAGGAATTGACGGGGACCCGCACAAGCGGTGGAGCATGTGGTTTAATTCGAA 75 ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| Sbjct 1617 GAAACTCAAAGGAATTGACGGGGGCCCGCACAAGCGGTGGAGCATGTGGTTTAATTCGAT 1558 Query 76 GCAACGCGAAGAACCTTACCAAATCTTGACATCCTCTGACCCCTCTAGAGATAGAGGTTT 135 ||||||| | |||||||||| |||||||| | ||| | | ||| | | Sbjct 1557 ACAACGCGCAAAACCTTACCAGCTCTTGACA---TATGA-------ACAACAAGACCTGT 1508 Query 136 CCCCTTCGG---GGGACAGAGT----GACAGGTGATGCATGGTTGTCGTCAGCTCGTGTC 188 || | | || || | | ||||||| ||||||| ||||||||||||||||| Sbjct 1507 CCTTAACAGGATGGTACTTACTTTCATACAGGTGCTGCATGGCTGTCGTCAGCTCGTGTC 1448 Query 189 GTGAGATGTTGGGTTAAGTCCCGCAACGAGCGCAACCCTTAAGCTTAGTTGC 240 |||||||||| ||| |||||| |||||||| |||||| | || ||||| Sbjct 1447 GTGAGATGTTTGGTCAAGTCCTATAACGAGCGAAACCCTCATTTTTTGTTGC 1396 >seq11 Length=25514024 Score = 98.7 bits (108), Expect = 3e-18 Identities = 269/410 (66%), Gaps = 13/410 (3%) Strand=Plus/Minus Query 53 TGGAGCATGTGGTTTAATTCGAAGCAACGCGAAGAACCTTACCAAATCTTGACATCCTCT 112 |||||| | ||||||||||||| || | ||| || |||| | | ||| |||| || | Sbjct 7802382 TGGAGCGTTTGGTTTAATTCGATATAAAGTGAAAAATCTTATTAGAGCTTCACATGCTAT 7802323 Query 113 GACCCCTCTAGAGATAGAGGTTTCCCCTTCGGGGGACAGAGTGACAGGTGATGCATGGTT 172 || ||| | || | ||||| | || |||| | | || | ||||| || | || Sbjct 7802322 GAATCCTATTGAAAGAGAGGGATGCC-TTCGAGA-ATGCAGACATAGGTGGTGTTCGTTT 7802265 Query 173 GTCGTCAGCTCGTGTCGTGAGATGTTGGGTTAAGTCCCGCAACGAGCGCAACCCTTAAGC 232 || || || ||| | | | | ||| | ||| ||||| || ||| Sbjct 7802264 ATCATCGACTTGTGCCTTTAAGTATTGTGGTAA---------CGAGCATAATCCTCGTAT 7802214 Query 233 TTAGTTGCCATCATTAAGTTGGGCACTCTAAGTTGACTGCCGGTGACAAACCGGAGGAAG 292 ||||||| |||||||||||| | || | | |||| | | || ||| || | |||| Sbjct 7802213 TTAGTTGTCATCATTAAGTTTGAAACCATGAACAGACTACTAGGGATAAATCGAAAGAAG 7802154 Query 293 GTGGGGACGACGTCAAATCATCATGCCCCTTATGATTTGGGCTACACACGTGCTACAATG 352 || || ||| |||| | ||||| || ||||||| |||| | ||||||| |||||| Sbjct 7802153 ATGATGATGACATCAAGTTATCATACCTCTTATGACTTGG--TCAACACGTGATACAATA 7802096 Query 353 GACAATACAAAGGGCAGCGAAACCGCGAGGTCAAGCAAATCCCATAAAGTTGTTCTCAGT 412 | ||| ||||||| ||| | || || |||| || ||| ||| | ||| | | | Sbjct 7802095 GTCAAGCCAAAGGGTCACGATCCTGCAAGAGTAAGCTAACTCCAAAAACTCGTTTTTAAT 7802036 Query 413 TCGGATTGTAGTCTGCAACTCGACTATATGAAGCTGGAATCGCTAGTAAT 462 ||||||| || |||||| | | ||||||| ||| |||||||| Sbjct 7802035 TCGGATTATATGGAGCAACTTGTTTGCATGAAGCCATTATCACTAGTAAT 7801986 >seq4275 Length=21226 Score = 77.0 bits (84), Expect = 1e-11 Identities = 80/103 (78%), Gaps = 3/103 (3%) Strand=Plus/Minus Query 7 CGCAAGGTTGAAACTCAAAGGAATTGACGG--GGACCCGCACAAGCGGTGGAGCATGTGG 64 ||||||| ||||||| |||||||||||||| || ||| ||| || ||||||| || || Sbjct 14411 CGCAAGGCTGAAACTTAAAGGAATTGACGGAAGGGCCC-CACTAGGAGTGGAGCCTGCGG 14353 Query 65 TTTAATTCGAAGCAACGCGAAGAACCTTACCAAATCTTGACAT 107 |||||| || |||| || ||| ||||||| || ||||| Sbjct 14352 CTTAATTTGACTCAACACGGGGAAACTTACCAGGTCCAGACAT 14310 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1503890824640