Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Musa_20acuminata_20subsp._20malaccensis_20[refseq_20GCF_5F000313855.
2_202012-11-14] 7,259 sequences; 472,231,289 total letters
Query= AAMG01000941.1
Length=299
Score E
Sequences producing significant alignments: (Bits) Value
seq4540 412 6e-113
seq2298 412 6e-113
seq4666 408 7e-112
seq3867 396 5e-108
seq2989 390 2e-106
seq409 390 2e-106
seq1293 385 8e-105
seq5722 149 1e-33
seq2 104 4e-20
seq1345 75.2 2e-11
>seq4540
Length=2785
Score = 412 bits (456), Expect = 6e-113
Identities = 268/293 (91%), Gaps = 1/293 (0%)
Strand=Plus/Plus
Query 1 TACTAAGCGGAATTACCATTGGGGCGACGGTCATCAGTAGGGTAAAACTAACCTGTCTCA 60
||||| | ||||||| || | ||| ||| ||||||||||||||||||||||||||||||
Sbjct 1338 TACTAGGTTGAATTACTATCGCGGC-ACGATCATCAGTAGGGTAAAACTAACCTGTCTCA 1396
Query 61 TGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTACCGA 120
||||||||||||||||||||||||||||||| |||||||||||||||||| ||| ||
Sbjct 1397 CGACGGTCTAAACCCAGCTCACGTTCCCTATTGGTGGGTGAACAATCCAACACTTGGTGA 1456
Query 121 ATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTAT 180
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1457 ATTCTGCTTCACAATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTAT 1516
Query 181 GAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGGCACCTCTAGCCT 240
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
Sbjct 1517 GAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGACACCTCTAGCTT 1576
Query 241 CAAATTTCGAGGGACTAAAGGATCGATAGGCCACACTTTCATGGTTTGTATTC 293
|||||| ||| || |||||||||||||||||||| |||||| |||| ||||||
Sbjct 1577 CAAATTCCGAAGGTCTAAAGGATCGATAGGCCACGCTTTCACGGTTCGTATTC 1629
>seq2298
Length=78726
Score = 412 bits (456), Expect = 6e-113
Identities = 268/293 (91%), Gaps = 1/293 (0%)
Strand=Plus/Plus
Query 1 TACTAAGCGGAATTACCATTGGGGCGACGGTCATCAGTAGGGTAAAACTAACCTGTCTCA 60
||||| | ||||||| || | ||| ||| ||||||||||||||||||||||||||||||
Sbjct 37283 TACTAGGTTGAATTACTATCGCGGC-ACGATCATCAGTAGGGTAAAACTAACCTGTCTCA 37341
Query 61 TGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTACCGA 120
||||||||||||||||||||||||||||||| |||||||||||||||||| ||| ||
Sbjct 37342 CGACGGTCTAAACCCAGCTCACGTTCCCTATTGGTGGGTGAACAATCCAACACTTGGTGA 37401
Query 121 ATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTAT 180
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 37402 ATTCTGCTTCACAATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTAT 37461
Query 181 GAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGGCACCTCTAGCCT 240
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
Sbjct 37462 GAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGACACCTCTAGCTT 37521
Query 241 CAAATTTCGAGGGACTAAAGGATCGATAGGCCACACTTTCATGGTTTGTATTC 293
|||||| ||| || |||||||||||||||||||| |||||| |||| ||||||
Sbjct 37522 CAAATTCCGAAGGTCTAAAGGATCGATAGGCCACGCTTTCACGGTTCGTATTC 37574
>seq4666
Length=16983
Score = 408 bits (452), Expect = 7e-112
Identities = 267/293 (91%), Gaps = 1/293 (0%)
Strand=Plus/Minus
Query 1 TACTAAGCGGAATTACCATTGGGGCGACGGTCATCAGTAGGGTAAAACTAACCTGTCTCA 60
||||| | ||||||| || | ||| ||| ||||||||||||||||||||||||||||||
Sbjct 16205 TACTAGGTTGAATTACTATCGCGGC-ACGATCATCAGTAGGGTAAAACTAACCTGTCTCA 16147
Query 61 TGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTACCGA 120
||||||||||||||||||||||||||||||| |||||||||||||||||| ||| ||
Sbjct 16146 CGACGGTCTAAACCCAGCTCACGTTCCCTATTGGTGGGTGAACAATCCAACACTTGGTGA 16087
Query 121 ATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTAT 180
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 16086 ATTCTGCTTCACAATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTAT 16027
Query 181 GAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGGCACCTCTAGCCT 240
||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||| |
Sbjct 16026 GAACGCTTGGCTGCCGCAAGCCAGTTATCCCTGTGGTAACTTTTCTGACACCTCTAGCTT 15967
Query 241 CAAATTTCGAGGGACTAAAGGATCGATAGGCCACACTTTCATGGTTTGTATTC 293
|||||| ||| || |||||||||||||||||||| |||||| |||| ||||||
Sbjct 15966 CAAATTCCGAAGGTCTAAAGGATCGATAGGCCACGCTTTCACGGTTCGTATTC 15914
>seq3867
Length=26241
Score = 396 bits (438), Expect = 5e-108
Identities = 265/294 (90%), Gaps = 1/294 (0%)
Strand=Plus/Plus
Query 1 TACTAAGCGGAATTACCATTGGGGCGACGGTCATCAGTAGGGTAAAACTAACCTGTCTCA 60
||||| | ||||||| | | ||| | | ||||||||||||||||||||||||||||||
Sbjct 7470 TACTAGGTTGAATTACTCTCGCGGC-ATGATCATCAGTAGGGTAAAACTAACCTGTCTCA 7528
Query 61 TGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTACCGA 120
||||||||||||||||||||||||||||||| |||||||||||||||||| ||| ||
Sbjct 7529 CGACGGTCTAAACCCAGCTCACGTTCCCTATTGGTGGGTGAACAATCCAACCCTTGGTGA 7588
Query 121 ATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTAT 180
|||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 7589 ATTCTGCTTCACAATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTTGCTAT 7648
Query 181 GAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGGCACCTCTAGCCT 240
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
Sbjct 7649 GAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGACACCTCTAGCTT 7708
Query 241 CAAATTTCGAGGGACTAAAGGATCGATAGGCCACACTTTCATGGTTTGTATTCA 294
|||||| ||| || ||||||||||||||||||| |||||| |||| |||||||
Sbjct 7709 CAAATTCCGAAGGTCTAAAGGATCGATAGGCCATGCTTTCACGGTTCGTATTCA 7762
>seq2989
Length=38965
Score = 390 bits (432), Expect = 2e-106
Identities = 263/293 (90%), Gaps = 1/293 (0%)
Strand=Plus/Minus
Query 1 TACTAAGCGGAATTACCATTGGGGCGACGGTCATCAGTAGGGTAAAACTAACCTGTCTCA 60
||||| | ||||||| || | || | | ||||||||||||||||||||||||||||||
Sbjct 14819 TACTAGGTTGAATTACTATCGTAGC-ATGATCATCAGTAGGGTAAAACTAACCTGTCTCA 14761
Query 61 TGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTACCGA 120
|| |||||||||||||||||||||||||||| |||||||||||||||||| ||| ||
Sbjct 14760 CGATGGTCTAAACCCAGCTCACGTTCCCTATTGGTGGGTGAACAATCCAACACTTGGTGA 14701
Query 121 ATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTAT 180
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 14700 ATTCTGCTTCACAATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTAT 14641
Query 181 GAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGGCACCTCTAGCCT 240
|||||||||||||||||||||||||||||||||||||||||||| || |||||||||| |
Sbjct 14640 GAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTTTGACACCTCTAGCTT 14581
Query 241 CAAATTTCGAGGGACTAAAGGATCGATAGGCCACACTTTCATGGTTTGTATTC 293
|||||| ||| || |||||||||||||||||||| |||||| |||| |||||
Sbjct 14580 CAAATTCCGAAGGTCTAAAGGATCGATAGGCCACGCTTTCACGGTTCATATTC 14528
>seq409
Length=3975
Score = 390 bits (432), Expect = 2e-106
Identities = 257/283 (91%), Gaps = 1/283 (0%)
Strand=Plus/Plus
Query 11 AATTACCATTGGGGCGACGGTCATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTA 70
|||||| || | ||| ||| |||||||||||||||||||||||||||||| |||||||||
Sbjct 3505 AATTACTATCGCGGC-ACGATCATCAGTAGGGTAAAACTAACCTGTCTCACGACGGTCTA 3563
Query 71 AACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTC 130
|||||||||||||||||||||| |||||||||||||||||| ||| ||||||||||||
Sbjct 3564 AACCCAGCTCACGTTCCCTATTGGTGGGTGAACAATCCAACACTTGGTGAATTCTGCTTC 3623
Query 131 GGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGG 190
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3624 ACAATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGG 3683
Query 191 CTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGGCACCTCTAGCCTCAAATTTCGA 250
||||||||||| ||||| |||| |||||||||||||| |||||||||| ||||||| |||
Sbjct 3684 CTGCCACAAGCTAGTTACCCCTATGGTAACTTTTCTGACACCTCTAGCTTCAAATTCCGA 3743
Query 251 GGGACTAAAGGATCGATAGGCCACACTTTCATGGTTTGTATTC 293
|| |||||||||||||||||||| |||||| | || ||||||
Sbjct 3744 AGGTCTAAAGGATCGATAGGCCACGCTTTCACGATTCGTATTC 3786
>seq1293
Length=347032
Score = 385 bits (426), Expect = 8e-105
Identities = 262/293 (89%), Gaps = 1/293 (0%)
Strand=Plus/Minus
Query 1 TACTAAGCGGAATTACCATTGGGGCGACGGTCATCAGTAGGGTAAAACTAACCTGTCTCA 60
||||| | ||||||| || | ||| | | ||||||||| ||||||||||||||||||||
Sbjct 299106 TACTAGGTTGAATTACTATCGCGGCAA-GATCATCAGTATGGTAAAACTAACCTGTCTCA 299048
Query 61 TGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTACCGA 120
|| ||||||||| ||||||||||||||||| |||||||||||||||||| ||| ||
Sbjct 299047 CGATAGTCTAAACCTAGCTCACGTTCCCTATTGGTGGGTGAACAATCCAACACTTGGTGA 298988
Query 121 ATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTAT 180
|||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 298987 ATTCTGCTTCACAATGATAGGAAGAGCCGACATTGAAGGATCAAAAAGCAACGTCGCTAT 298928
Query 181 GAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGGCACCTCTAGCCT 240
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
Sbjct 298927 GAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGACACCTCTAGCTT 298868
Query 241 CAAATTTCGAGGGACTAAAGGATCGATAGGCCACACTTTCATGGTTTGTATTC 293
|||||| ||| || |||||||||||||||||||| |||||| |||| ||||||
Sbjct 298867 CAAATTCCGAAGGTCTAAAGGATCGATAGGCCACGCTTTCACGGTTCGTATTC 298815
>seq5722
Length=7692
Score = 149 bits (164), Expect = 1e-33
Identities = 99/110 (90%), Gaps = 0/110 (0%)
Strand=Plus/Minus
Query 172 CGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGGCAC 231
|||| ||||||||||||||||| ||||||||| |||||| |||||||||||||||| |||
Sbjct 111 CGTCACTATGAACGCTTGGCTGTCACAAGCCAATTATCCATGTGGTAACTTTTCTGACAC 52
Query 232 CTCTAGCCTCAAATTTCGAGGGACTAAAGGATCGATAGGCCACACTTTCA 281
|||||| ||||||| ||| || |||||||||||||||||||| ||||||
Sbjct 51 ATCTAGCTTCAAATTCCGAAGGTCTAAAGGATCGATAGGCCACGCTTTCA 2
>seq2
Length=22054697
Score = 104 bits (114), Expect = 4e-20
Identities = 88/107 (82%), Gaps = 1/107 (1%)
Strand=Plus/Plus
Query 178 TATGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGGCACCTCTAG 237
|||||| ||||||||||||||||| | |||| ||| | ||||||||| | ||||| |||
Sbjct 19402067 TATGAATGCTTGGCTGCCACAAGCTAATTATTCCTATAATAACTTTTCCGACACCTGTAG 19402126
Query 238 CCTCAAATTTCGAGGGACTAAAGGATCGATAGGCCACACTTTCATGG 284
| ||||||| | | | ||||| ||| ||| ||||||||||||||||
Sbjct 19402127 CTTCAAATTAC-AATGTCTAAAAGATTGATGGGCCACACTTTCATGG 19402172
>seq1345
Length=230545
Score = 75.2 bits (82), Expect = 2e-11
Identities = 98/134 (73%), Gaps = 5/134 (4%)
Strand=Plus/Plus
Query 90 ATTAGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAG----A 145
|||||||| ||||||| |||| || | || || |||||| || |||| ||| |
Sbjct 71522 ATTAGTGGATGAACAAGCCAATTCTAATTGAGTTTTGCTTCACGATAATAGAAAGCTTTA 71581
Query 146 GCCGACATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAG- 204
|||| || ||||||||||||||||| | |||| || || | | || ||||| |||
Sbjct 71582 GCCGGTATAGAAGGATCAAAAAGCAATATAGCTAGAAATGCATAGTTGATACAAGTCAGA 71641
Query 205 TTATCCCTGTGGTA 218
||||| |||||||
Sbjct 71642 CTATCCATGTGGTA 71655
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 854337979104
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |