Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Musa_20acuminata_20subsp._20malaccensis_20[refseq_20GCF_5F000313855. 2_202012-11-14] 7,259 sequences; 472,231,289 total letters Query= AAMG01000941.1 Length=299 Score E Sequences producing significant alignments: (Bits) Value seq4540 412 6e-113 seq2298 412 6e-113 seq4666 408 7e-112 seq3867 396 5e-108 seq2989 390 2e-106 seq409 390 2e-106 seq1293 385 8e-105 seq5722 149 1e-33 seq2 104 4e-20 seq1345 75.2 2e-11 >seq4540 Length=2785 Score = 412 bits (456), Expect = 6e-113 Identities = 268/293 (91%), Gaps = 1/293 (0%) Strand=Plus/Plus Query 1 TACTAAGCGGAATTACCATTGGGGCGACGGTCATCAGTAGGGTAAAACTAACCTGTCTCA 60 ||||| | ||||||| || | ||| ||| |||||||||||||||||||||||||||||| Sbjct 1338 TACTAGGTTGAATTACTATCGCGGC-ACGATCATCAGTAGGGTAAAACTAACCTGTCTCA 1396 Query 61 TGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTACCGA 120 ||||||||||||||||||||||||||||||| |||||||||||||||||| ||| || Sbjct 1397 CGACGGTCTAAACCCAGCTCACGTTCCCTATTGGTGGGTGAACAATCCAACACTTGGTGA 1456 Query 121 ATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTAT 180 |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1457 ATTCTGCTTCACAATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTAT 1516 Query 181 GAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGGCACCTCTAGCCT 240 ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| | Sbjct 1517 GAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGACACCTCTAGCTT 1576 Query 241 CAAATTTCGAGGGACTAAAGGATCGATAGGCCACACTTTCATGGTTTGTATTC 293 |||||| ||| || |||||||||||||||||||| |||||| |||| |||||| Sbjct 1577 CAAATTCCGAAGGTCTAAAGGATCGATAGGCCACGCTTTCACGGTTCGTATTC 1629 >seq2298 Length=78726 Score = 412 bits (456), Expect = 6e-113 Identities = 268/293 (91%), Gaps = 1/293 (0%) Strand=Plus/Plus Query 1 TACTAAGCGGAATTACCATTGGGGCGACGGTCATCAGTAGGGTAAAACTAACCTGTCTCA 60 ||||| | ||||||| || | ||| ||| |||||||||||||||||||||||||||||| Sbjct 37283 TACTAGGTTGAATTACTATCGCGGC-ACGATCATCAGTAGGGTAAAACTAACCTGTCTCA 37341 Query 61 TGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTACCGA 120 ||||||||||||||||||||||||||||||| |||||||||||||||||| ||| || Sbjct 37342 CGACGGTCTAAACCCAGCTCACGTTCCCTATTGGTGGGTGAACAATCCAACACTTGGTGA 37401 Query 121 ATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTAT 180 |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 37402 ATTCTGCTTCACAATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTAT 37461 Query 181 GAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGGCACCTCTAGCCT 240 ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| | Sbjct 37462 GAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGACACCTCTAGCTT 37521 Query 241 CAAATTTCGAGGGACTAAAGGATCGATAGGCCACACTTTCATGGTTTGTATTC 293 |||||| ||| || |||||||||||||||||||| |||||| |||| |||||| Sbjct 37522 CAAATTCCGAAGGTCTAAAGGATCGATAGGCCACGCTTTCACGGTTCGTATTC 37574 >seq4666 Length=16983 Score = 408 bits (452), Expect = 7e-112 Identities = 267/293 (91%), Gaps = 1/293 (0%) Strand=Plus/Minus Query 1 TACTAAGCGGAATTACCATTGGGGCGACGGTCATCAGTAGGGTAAAACTAACCTGTCTCA 60 ||||| | ||||||| || | ||| ||| |||||||||||||||||||||||||||||| Sbjct 16205 TACTAGGTTGAATTACTATCGCGGC-ACGATCATCAGTAGGGTAAAACTAACCTGTCTCA 16147 Query 61 TGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTACCGA 120 ||||||||||||||||||||||||||||||| |||||||||||||||||| ||| || Sbjct 16146 CGACGGTCTAAACCCAGCTCACGTTCCCTATTGGTGGGTGAACAATCCAACACTTGGTGA 16087 Query 121 ATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTAT 180 |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 16086 ATTCTGCTTCACAATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTAT 16027 Query 181 GAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGGCACCTCTAGCCT 240 ||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||| | Sbjct 16026 GAACGCTTGGCTGCCGCAAGCCAGTTATCCCTGTGGTAACTTTTCTGACACCTCTAGCTT 15967 Query 241 CAAATTTCGAGGGACTAAAGGATCGATAGGCCACACTTTCATGGTTTGTATTC 293 |||||| ||| || |||||||||||||||||||| |||||| |||| |||||| Sbjct 15966 CAAATTCCGAAGGTCTAAAGGATCGATAGGCCACGCTTTCACGGTTCGTATTC 15914 >seq3867 Length=26241 Score = 396 bits (438), Expect = 5e-108 Identities = 265/294 (90%), Gaps = 1/294 (0%) Strand=Plus/Plus Query 1 TACTAAGCGGAATTACCATTGGGGCGACGGTCATCAGTAGGGTAAAACTAACCTGTCTCA 60 ||||| | ||||||| | | ||| | | |||||||||||||||||||||||||||||| Sbjct 7470 TACTAGGTTGAATTACTCTCGCGGC-ATGATCATCAGTAGGGTAAAACTAACCTGTCTCA 7528 Query 61 TGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTACCGA 120 ||||||||||||||||||||||||||||||| |||||||||||||||||| ||| || Sbjct 7529 CGACGGTCTAAACCCAGCTCACGTTCCCTATTGGTGGGTGAACAATCCAACCCTTGGTGA 7588 Query 121 ATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTAT 180 |||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct 7589 ATTCTGCTTCACAATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTTGCTAT 7648 Query 181 GAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGGCACCTCTAGCCT 240 ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| | Sbjct 7649 GAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGACACCTCTAGCTT 7708 Query 241 CAAATTTCGAGGGACTAAAGGATCGATAGGCCACACTTTCATGGTTTGTATTCA 294 |||||| ||| || ||||||||||||||||||| |||||| |||| ||||||| Sbjct 7709 CAAATTCCGAAGGTCTAAAGGATCGATAGGCCATGCTTTCACGGTTCGTATTCA 7762 >seq2989 Length=38965 Score = 390 bits (432), Expect = 2e-106 Identities = 263/293 (90%), Gaps = 1/293 (0%) Strand=Plus/Minus Query 1 TACTAAGCGGAATTACCATTGGGGCGACGGTCATCAGTAGGGTAAAACTAACCTGTCTCA 60 ||||| | ||||||| || | || | | |||||||||||||||||||||||||||||| Sbjct 14819 TACTAGGTTGAATTACTATCGTAGC-ATGATCATCAGTAGGGTAAAACTAACCTGTCTCA 14761 Query 61 TGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTACCGA 120 || |||||||||||||||||||||||||||| |||||||||||||||||| ||| || Sbjct 14760 CGATGGTCTAAACCCAGCTCACGTTCCCTATTGGTGGGTGAACAATCCAACACTTGGTGA 14701 Query 121 ATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTAT 180 |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 14700 ATTCTGCTTCACAATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTAT 14641 Query 181 GAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGGCACCTCTAGCCT 240 |||||||||||||||||||||||||||||||||||||||||||| || |||||||||| | Sbjct 14640 GAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTTTGACACCTCTAGCTT 14581 Query 241 CAAATTTCGAGGGACTAAAGGATCGATAGGCCACACTTTCATGGTTTGTATTC 293 |||||| ||| || |||||||||||||||||||| |||||| |||| ||||| Sbjct 14580 CAAATTCCGAAGGTCTAAAGGATCGATAGGCCACGCTTTCACGGTTCATATTC 14528 >seq409 Length=3975 Score = 390 bits (432), Expect = 2e-106 Identities = 257/283 (91%), Gaps = 1/283 (0%) Strand=Plus/Plus Query 11 AATTACCATTGGGGCGACGGTCATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTA 70 |||||| || | ||| ||| |||||||||||||||||||||||||||||| ||||||||| Sbjct 3505 AATTACTATCGCGGC-ACGATCATCAGTAGGGTAAAACTAACCTGTCTCACGACGGTCTA 3563 Query 71 AACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTC 130 |||||||||||||||||||||| |||||||||||||||||| ||| |||||||||||| Sbjct 3564 AACCCAGCTCACGTTCCCTATTGGTGGGTGAACAATCCAACACTTGGTGAATTCTGCTTC 3623 Query 131 GGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGG 190 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 3624 ACAATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGG 3683 Query 191 CTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGGCACCTCTAGCCTCAAATTTCGA 250 ||||||||||| ||||| |||| |||||||||||||| |||||||||| ||||||| ||| Sbjct 3684 CTGCCACAAGCTAGTTACCCCTATGGTAACTTTTCTGACACCTCTAGCTTCAAATTCCGA 3743 Query 251 GGGACTAAAGGATCGATAGGCCACACTTTCATGGTTTGTATTC 293 || |||||||||||||||||||| |||||| | || |||||| Sbjct 3744 AGGTCTAAAGGATCGATAGGCCACGCTTTCACGATTCGTATTC 3786 >seq1293 Length=347032 Score = 385 bits (426), Expect = 8e-105 Identities = 262/293 (89%), Gaps = 1/293 (0%) Strand=Plus/Minus Query 1 TACTAAGCGGAATTACCATTGGGGCGACGGTCATCAGTAGGGTAAAACTAACCTGTCTCA 60 ||||| | ||||||| || | ||| | | ||||||||| |||||||||||||||||||| Sbjct 299106 TACTAGGTTGAATTACTATCGCGGCAA-GATCATCAGTATGGTAAAACTAACCTGTCTCA 299048 Query 61 TGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTACCGA 120 || ||||||||| ||||||||||||||||| |||||||||||||||||| ||| || Sbjct 299047 CGATAGTCTAAACCTAGCTCACGTTCCCTATTGGTGGGTGAACAATCCAACACTTGGTGA 298988 Query 121 ATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTAT 180 |||||||||| |||||||||||||||||||| |||||||||||||||||||||||||| Sbjct 298987 ATTCTGCTTCACAATGATAGGAAGAGCCGACATTGAAGGATCAAAAAGCAACGTCGCTAT 298928 Query 181 GAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGGCACCTCTAGCCT 240 ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| | Sbjct 298927 GAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGACACCTCTAGCTT 298868 Query 241 CAAATTTCGAGGGACTAAAGGATCGATAGGCCACACTTTCATGGTTTGTATTC 293 |||||| ||| || |||||||||||||||||||| |||||| |||| |||||| Sbjct 298867 CAAATTCCGAAGGTCTAAAGGATCGATAGGCCACGCTTTCACGGTTCGTATTC 298815 >seq5722 Length=7692 Score = 149 bits (164), Expect = 1e-33 Identities = 99/110 (90%), Gaps = 0/110 (0%) Strand=Plus/Minus Query 172 CGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGGCAC 231 |||| ||||||||||||||||| ||||||||| |||||| |||||||||||||||| ||| Sbjct 111 CGTCACTATGAACGCTTGGCTGTCACAAGCCAATTATCCATGTGGTAACTTTTCTGACAC 52 Query 232 CTCTAGCCTCAAATTTCGAGGGACTAAAGGATCGATAGGCCACACTTTCA 281 |||||| ||||||| ||| || |||||||||||||||||||| |||||| Sbjct 51 ATCTAGCTTCAAATTCCGAAGGTCTAAAGGATCGATAGGCCACGCTTTCA 2 >seq2 Length=22054697 Score = 104 bits (114), Expect = 4e-20 Identities = 88/107 (82%), Gaps = 1/107 (1%) Strand=Plus/Plus Query 178 TATGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGGCACCTCTAG 237 |||||| ||||||||||||||||| | |||| ||| | ||||||||| | ||||| ||| Sbjct 19402067 TATGAATGCTTGGCTGCCACAAGCTAATTATTCCTATAATAACTTTTCCGACACCTGTAG 19402126 Query 238 CCTCAAATTTCGAGGGACTAAAGGATCGATAGGCCACACTTTCATGG 284 | ||||||| | | | ||||| ||| ||| |||||||||||||||| Sbjct 19402127 CTTCAAATTAC-AATGTCTAAAAGATTGATGGGCCACACTTTCATGG 19402172 >seq1345 Length=230545 Score = 75.2 bits (82), Expect = 2e-11 Identities = 98/134 (73%), Gaps = 5/134 (4%) Strand=Plus/Plus Query 90 ATTAGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAG----A 145 |||||||| ||||||| |||| || | || || |||||| || |||| ||| | Sbjct 71522 ATTAGTGGATGAACAAGCCAATTCTAATTGAGTTTTGCTTCACGATAATAGAAAGCTTTA 71581 Query 146 GCCGACATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAG- 204 |||| || ||||||||||||||||| | |||| || || | | || ||||| ||| Sbjct 71582 GCCGGTATAGAAGGATCAAAAAGCAATATAGCTAGAAATGCATAGTTGATACAAGTCAGA 71641 Query 205 TTATCCCTGTGGTA 218 ||||| ||||||| Sbjct 71642 CTATCCATGTGGTA 71655 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 854337979104