Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Musa_20acuminata_20subsp._20malaccensis_20[refseq_20GCF_5F000313855. 2_202012-11-14] 7,259 sequences; 472,231,289 total letters Query= AAMG01001083.1 Length=339 Score E Sequences producing significant alignments: (Bits) Value seq1376 158 2e-36 seq5789 116 7e-24 seq10 98.7 2e-18 seq1032 73.4 8e-11 >seq1376 Length=180402 Score = 158 bits (174), Expect = 2e-36 Identities = 166/216 (77%), Gaps = 2/216 (1%) Strand=Plus/Minus Query 111 GGGACAGTGTCAGTCGGGCAGTTTGACTGGGGCGGTCGCCTCCCAAAGAGTAACGGAGGC 170 |||||||| |||| | |||||| ||||||| |||||||||| ||||||||||| Sbjct 83844 GGGACAGTCTCAGGTAGACAGTTTCTATGGGGCGTAGGCCTCCCAAAAGGTAACGGAGGC 83785 Query 171 GCCCAAAGATACCCTCAGCTTGGATGGAAACCATGCGCAC-AGTGCAAAGGCAAAAGGGT 229 | ||||| | |||| | ||| ||| | || | | |||||||||||| ||||| Sbjct 83784 GTGCAAAGGTTTCCTCGGGCCGGACGGAGATTG-GCCCTCGAGTGCAAAGGCAGAAGGGA 83726 Query 230 GTTTGACTGCGACACCCTCAAGTCTAGCAGGGACGAAAGTCGGGCTTAATGATCCGGCGG 289 | |||||||| | |||| | ||| |||||||||||||||||| |||| |||| || ||| Sbjct 83725 GCTTGACTGCAAGACCCACCCGTCGAGCAGGGACGAAAGTCGGCCTTAGTGATTCGACGG 83666 Query 290 TGCTGAATGGAACGGCCGTCGCTCGACGGATAAAAG 325 ||| || ||||| | |||||||| ||||||||||| Sbjct 83665 TGCCGAGTGGAAGGATCGTCGCTCAACGGATAAAAG 83630 >seq5789 Length=6742 Score = 116 bits (128), Expect = 7e-24 Identities = 167/234 (71%), Gaps = 6/234 (3%) Strand=Plus/Minus Query 107 TGACGGGACAGTGTCAGTCGGGCAGTTTGACTGGGGCGGTCGCCTCCCAAAGAGTAACGG 166 || ||||||| ||| || ||| ||||| ||||||||| |||||| |||||||||||| Sbjct 2956 TGGCGGGACACTGTGAGGTGGGTAGTTTTTCTGGGGCGGATGCCTCCTAAAGAGTAACGG 2897 Query 167 AGGCGCCCAAAGATACCCTCA-GCTTGGATGGAAACCATGCGCACAGTGCAAAGGCAAAA 225 ||| | | ||| || |||| || | ||| | | || || | || || | || Sbjct 2896 AGGTGTGCGAAGGTAGGCTCAAGCGTTGATTCAGCTCGTGAGC-----GTAATGGTATAA 2842 Query 226 GGGTGTTTGACTGCGACACCCTCAAGTCTAGCAGGGACGAAAGTCGGGCTTAATGATCCG 285 | || |||||| || ||| | ||| | ||| |||||||||||| | || ||||||| Sbjct 2841 GCCTGCCTGACTGTGAGACCTACTGGTCGAACAGAGACGAAAGTCGGCCATAGTGATCCG 2782 Query 286 GCGGTGCTGAATGGAACGGCCGTCGCTCGACGGATAAAAGCTACCCTGGGGATA 339 | || | | ||||| ||| |||||| |||||| |||| ||| | ||||||| Sbjct 2781 GGAGTCCCGTGTGGAAGGGCTCTCGCTCAACGGATCAAAGGTACGCCGGGGATA 2728 >seq10 Length=33665772 Score = 98.7 bits (108), Expect = 2e-18 Identities = 139/193 (72%), Gaps = 2/193 (1%) Strand=Plus/Minus Query 148 GCCTCCCAAAGAGTAACGGAGGCGCCCAAAGATACCCTCAGCTTGGATGGAAACCATGCG 207 |||||||||| ||||||||||| ||||| | |||| | |||||||| || Sbjct 30367861 GCCTCCCAAAAGGTAACGGAGGCATGCAAAGGTTTCCTCGGGCCAGATGGAAATTG-GCC 30367803 Query 208 CACA-GTGCAAAGGCAAAAGGGTGTTTGACTGCGACACCCTCAAGTCTAGCAGGGACGAA 266 | || ||||||||||||||||| ||||| || | || | ||| |||| ||| || Sbjct 30367802 CTCAAGTGCAAAGGCAAAAGGGAACTTGACAGCAAGGTCCACCCGTCGAGCAAGGATAAA 30367743 Query 267 AGTCGGGCTTAATGATCCGGCGGTGCTGAATGGAACGGCCGTCGCTCGACGGATAAAAGC 326 |||| |||| |||| | ||| | || ||||| || | || ||| ||||||||||| Sbjct 30367742 AGTCAACCTTAGTGATTCAACGGAACCGAGTGGAAGGGTCATCACTCAACGGATAAAAGT 30367683 Query 327 TACCCTGGGGATA 339 ||| || |||||| Sbjct 30367682 TACTCTAGGGATA 30367670 >seq1032 Length=621771 Score = 73.4 bits (80), Expect = 8e-11 Identities = 98/134 (73%), Gaps = 7/134 (5%) Strand=Plus/Plus Query 211 AGTGCAAAGGCAAAAGGGTGTTTGACTGCGACACCCTCA-AGTCTAGCAGGGAC----GA 265 ||||| ||| | ||||| | |||||||| || | | | || ||||||||| || Sbjct 449074 AGTGCTAAGTAAGAAGGGCGCTTGACTGCAACTC--TAAGAGCAGAGCAGGGACGAAAGA 449131 Query 266 AAGTCGGGCTTAATGATCCGGCGGTGCTGAATGGAACGGCCGTCGCTCGACGGATAAAAG 325 |||| || |||| ||||| | |||||| || |||| |||| ||||| ||||||||| | Sbjct 449132 AAGTAGGCCTTAGTGATCTGACGGTGCCGAGGGGAAGGGCCATCGCTTAACGGATAAAGG 449191 Query 326 CTACCCTGGGGATA 339 || || |||||| Sbjct 449192 TGACTCTAGGGATA 449205 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 982328687584