Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Musa_20acuminata_20subsp._20malaccensis_20[refseq_20GCF_5F000313855.
2_202012-11-14] 7,259 sequences; 472,231,289 total letters
Query= AAMG01001083.1
Length=339
Score E
Sequences producing significant alignments: (Bits) Value
seq1376 158 2e-36
seq5789 116 7e-24
seq10 98.7 2e-18
seq1032 73.4 8e-11
>seq1376
Length=180402
Score = 158 bits (174), Expect = 2e-36
Identities = 166/216 (77%), Gaps = 2/216 (1%)
Strand=Plus/Minus
Query 111 GGGACAGTGTCAGTCGGGCAGTTTGACTGGGGCGGTCGCCTCCCAAAGAGTAACGGAGGC 170
|||||||| |||| | |||||| ||||||| |||||||||| |||||||||||
Sbjct 83844 GGGACAGTCTCAGGTAGACAGTTTCTATGGGGCGTAGGCCTCCCAAAAGGTAACGGAGGC 83785
Query 171 GCCCAAAGATACCCTCAGCTTGGATGGAAACCATGCGCAC-AGTGCAAAGGCAAAAGGGT 229
| ||||| | |||| | ||| ||| | || | | |||||||||||| |||||
Sbjct 83784 GTGCAAAGGTTTCCTCGGGCCGGACGGAGATTG-GCCCTCGAGTGCAAAGGCAGAAGGGA 83726
Query 230 GTTTGACTGCGACACCCTCAAGTCTAGCAGGGACGAAAGTCGGGCTTAATGATCCGGCGG 289
| |||||||| | |||| | ||| |||||||||||||||||| |||| |||| || |||
Sbjct 83725 GCTTGACTGCAAGACCCACCCGTCGAGCAGGGACGAAAGTCGGCCTTAGTGATTCGACGG 83666
Query 290 TGCTGAATGGAACGGCCGTCGCTCGACGGATAAAAG 325
||| || ||||| | |||||||| |||||||||||
Sbjct 83665 TGCCGAGTGGAAGGATCGTCGCTCAACGGATAAAAG 83630
>seq5789
Length=6742
Score = 116 bits (128), Expect = 7e-24
Identities = 167/234 (71%), Gaps = 6/234 (3%)
Strand=Plus/Minus
Query 107 TGACGGGACAGTGTCAGTCGGGCAGTTTGACTGGGGCGGTCGCCTCCCAAAGAGTAACGG 166
|| ||||||| ||| || ||| ||||| ||||||||| |||||| ||||||||||||
Sbjct 2956 TGGCGGGACACTGTGAGGTGGGTAGTTTTTCTGGGGCGGATGCCTCCTAAAGAGTAACGG 2897
Query 167 AGGCGCCCAAAGATACCCTCA-GCTTGGATGGAAACCATGCGCACAGTGCAAAGGCAAAA 225
||| | | ||| || |||| || | ||| | | || || | || || | ||
Sbjct 2896 AGGTGTGCGAAGGTAGGCTCAAGCGTTGATTCAGCTCGTGAGC-----GTAATGGTATAA 2842
Query 226 GGGTGTTTGACTGCGACACCCTCAAGTCTAGCAGGGACGAAAGTCGGGCTTAATGATCCG 285
| || |||||| || ||| | ||| | ||| |||||||||||| | || |||||||
Sbjct 2841 GCCTGCCTGACTGTGAGACCTACTGGTCGAACAGAGACGAAAGTCGGCCATAGTGATCCG 2782
Query 286 GCGGTGCTGAATGGAACGGCCGTCGCTCGACGGATAAAAGCTACCCTGGGGATA 339
| || | | ||||| ||| |||||| |||||| |||| ||| | |||||||
Sbjct 2781 GGAGTCCCGTGTGGAAGGGCTCTCGCTCAACGGATCAAAGGTACGCCGGGGATA 2728
>seq10
Length=33665772
Score = 98.7 bits (108), Expect = 2e-18
Identities = 139/193 (72%), Gaps = 2/193 (1%)
Strand=Plus/Minus
Query 148 GCCTCCCAAAGAGTAACGGAGGCGCCCAAAGATACCCTCAGCTTGGATGGAAACCATGCG 207
|||||||||| ||||||||||| ||||| | |||| | |||||||| ||
Sbjct 30367861 GCCTCCCAAAAGGTAACGGAGGCATGCAAAGGTTTCCTCGGGCCAGATGGAAATTG-GCC 30367803
Query 208 CACA-GTGCAAAGGCAAAAGGGTGTTTGACTGCGACACCCTCAAGTCTAGCAGGGACGAA 266
| || ||||||||||||||||| ||||| || | || | ||| |||| ||| ||
Sbjct 30367802 CTCAAGTGCAAAGGCAAAAGGGAACTTGACAGCAAGGTCCACCCGTCGAGCAAGGATAAA 30367743
Query 267 AGTCGGGCTTAATGATCCGGCGGTGCTGAATGGAACGGCCGTCGCTCGACGGATAAAAGC 326
|||| |||| |||| | ||| | || ||||| || | || ||| |||||||||||
Sbjct 30367742 AGTCAACCTTAGTGATTCAACGGAACCGAGTGGAAGGGTCATCACTCAACGGATAAAAGT 30367683
Query 327 TACCCTGGGGATA 339
||| || ||||||
Sbjct 30367682 TACTCTAGGGATA 30367670
>seq1032
Length=621771
Score = 73.4 bits (80), Expect = 8e-11
Identities = 98/134 (73%), Gaps = 7/134 (5%)
Strand=Plus/Plus
Query 211 AGTGCAAAGGCAAAAGGGTGTTTGACTGCGACACCCTCA-AGTCTAGCAGGGAC----GA 265
||||| ||| | ||||| | |||||||| || | | | || ||||||||| ||
Sbjct 449074 AGTGCTAAGTAAGAAGGGCGCTTGACTGCAACTC--TAAGAGCAGAGCAGGGACGAAAGA 449131
Query 266 AAGTCGGGCTTAATGATCCGGCGGTGCTGAATGGAACGGCCGTCGCTCGACGGATAAAAG 325
|||| || |||| ||||| | |||||| || |||| |||| ||||| ||||||||| |
Sbjct 449132 AAGTAGGCCTTAGTGATCTGACGGTGCCGAGGGGAAGGGCCATCGCTTAACGGATAAAGG 449191
Query 326 CTACCCTGGGGATA 339
|| || ||||||
Sbjct 449192 TGACTCTAGGGATA 449205
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 982328687584
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |