Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Musa_20acuminata_20subsp._20malaccensis_20[refseq_20GCF_5F000313855. 2_202012-11-14] 7,259 sequences; 472,231,289 total letters Query= AAMG01001178.1 Length=367 Score E Sequences producing significant alignments: (Bits) Value seq1035 203 7e-50 seq3 176 1e-41 seq1041 102 2e-19 seq1023 86.0 1e-14 seq10 78.8 2e-12 >seq1035 Length=594915 Score = 203 bits (224), Expect = 7e-50 Identities = 179/220 (81%), Gaps = 4/220 (2%) Strand=Plus/Plus Query 1 CTTTACAATCCGAA--GACCTTCTTTCACACACGCGGCATTGGCTGGATCAGGCTTTCGC 58 |||||||| | ||| | ||||||| ||| |||||| |||| ||||||| ||||||||| Sbjct 2062 CTTTACAAGCGGAATTGCCCTTCTT-CACTCACGCGATATTG-CTGGATCGGGCTTTCGC 2119 Query 59 CCATTGTCCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCC 118 ||||||||||| |||||||||||| ||| ||||| |||||| || || ||||||||| || Sbjct 2120 CCATTGTCCAAGATTCCCCACTGCAGCCCCCCGTGGGAGTCCGGGCCCTGTCTCAGTCCC 2179 Query 119 AGTGTGACTGATCATCCTCTCAGACCAGTTACGGATCGTCGCCTTGGTGAGCCATTACCT 178 |||||| |||||||||| ||||||| || | ||| | | |||||| |||| |||||| Sbjct 2180 AGTGTGGCTGATCATCCGAAAAGACCAGCTAAGCATCATTGGCTTGGTTAGCCTTTACCT 2239 Query 179 CACCAACTAGCTAATCCGACCTAGGCTCATCTGATAGCGC 218 |||||||| ||||| | || ||||||||| | ||||| Sbjct 2240 GACCAACTACCTAATACTACGCAGGCTCATCAAACAGCGC 2279 >seq3 Length=30470407 Score = 176 bits (194), Expect = 1e-41 Identities = 112/122 (92%), Gaps = 0/122 (0%) Strand=Plus/Plus Query 68 AATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGTGACT 127 || |||||||||||||||||||||||||||||||| |||||||||||| |||||||| || Sbjct 688760 AAAATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGGCCGTGTCTCAGTCCCAGTGTGGCT 688819 Query 128 GATCATCCTCTCAGACCAGTTACGGATCGTCGCCTTGGTGAGCCATTACCTCACCAACTA 187 |||||||||||| |||||| ||| |||| |||||||||| ||| |||||||||||||||| Sbjct 688820 GATCATCCTCTCGGACCAGCTACTGATCATCGCCTTGGTAAGCTATTACCTCACCAACTA 688879 Query 188 GC 189 || Sbjct 688880 GC 688881 >seq1041 Length=564860 Score = 102 bits (112), Expect = 2e-19 Identities = 77/91 (85%), Gaps = 0/91 (0%) Strand=Plus/Minus Query 108 GTCTCAGTTCCAGTGTGACTGATCATCCTCTCAGACCAGTTACGGATCGTCGCCTTGGTG 167 |||||||| |||||||| ||||||||| ||||| | ||| |||| |||||||||| Sbjct 504919 GTCTCAGTCCCAGTGTGGCTGATCATCTGAAAAGACCTGCTACTGATCATCGCCTTGGTA 504860 Query 168 AGCCATTACCTCACCAACTAGCTAATCCGAC 198 ||| ||||||||||||||||||||||| ||| Sbjct 504859 AGCTATTACCTCACCAACTAGCTAATCAGAC 504829 >seq1023 Length=737256 Score = 86.0 bits (94), Expect = 1e-14 Identities = 118/162 (73%), Gaps = 15/162 (9%) Strand=Plus/Minus Query 51 GCTTTCGCCCA-TTGTCCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGT 109 |||||| ||| || ||||| |||| ||||||||||||| |||| ||| || ||| Sbjct 565378 GCTTTCACCCTGTTATCCAA-ATTCGAAACTGCTGCCTCCCTCCTGAGTATGGGCCCTGT 565320 Query 110 CTCAGTTCC---------AGTGTGACTGATCATCC-TCTCAGACCAGTTACGGATCGTCG 159 |||||| || ||| || |||||||||| ||||| || || |||| ||| Sbjct 565319 CTCAGTCCCAGTCAGTGTAGTTTGGCTGATCATCCGAAAAAGACCTGTCACTGATCATCG 565260 Query 160 CCTTGGTGAGCCATT---ACCTCACCAACTAGCTAATCCGAC 198 ||||| | ||| ||| ||||||||||||||||||| ||| Sbjct 565259 CCTTGCTAAGCTATTGCCTCCTCACCAACTAGCTAATCAGAC 565218 >seq10 Length=33665772 Score = 78.8 bits (86), Expect = 2e-12 Identities = 113/156 (72%), Gaps = 10/156 (6%) Strand=Plus/Minus Query 46 ATCAGGCTTTCGCCCATTGTCCAA---TATTCCCCACTGCTGCCTCCCGTAGGAGTCTGG 102 |||||||||||| |||||| || | || |||| | | || ||| |||||||| Sbjct 20040419 ATCAGGCTTTCGTCCATTGCAAAAAGGTTTTTTTCACTCTTACTTCTTGTATGAGTCTGG 20040360 Query 103 ACCGTGTCTCAGTTCCAGTGTGACTGATCATCCTCTCAGACCAGTTAC-----GGATCGT 157 | | |||||| | |||||||| |||||||| |||||| ||||| ||| |||| | Sbjct 20040359 ATTGCGTCTCAATACCAGTGTGGCTGATCATTCTCTCAAACCAGCTACTGAATTGATCAT 20040300 Query 158 CGCC-TTGGTGAGCCATTACCTCA-CCAACTAGCTA 191 | || ||||| || |||| |||| | ||| ||||| Sbjct 20040299 CCCCTTTGGTAAGTTATTAACTCATCGAACCAGCTA 20040264 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1071922183520