Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Musa_20acuminata_20subsp._20malaccensis_20[refseq_20GCF_5F000313855.
2_202012-11-14] 7,259 sequences; 472,231,289 total letters
Query= AAMG01001178.1
Length=367
Score E
Sequences producing significant alignments: (Bits) Value
seq1035 203 7e-50
seq3 176 1e-41
seq1041 102 2e-19
seq1023 86.0 1e-14
seq10 78.8 2e-12
>seq1035
Length=594915
Score = 203 bits (224), Expect = 7e-50
Identities = 179/220 (81%), Gaps = 4/220 (2%)
Strand=Plus/Plus
Query 1 CTTTACAATCCGAA--GACCTTCTTTCACACACGCGGCATTGGCTGGATCAGGCTTTCGC 58
|||||||| | ||| | ||||||| ||| |||||| |||| ||||||| |||||||||
Sbjct 2062 CTTTACAAGCGGAATTGCCCTTCTT-CACTCACGCGATATTG-CTGGATCGGGCTTTCGC 2119
Query 59 CCATTGTCCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCC 118
||||||||||| |||||||||||| ||| ||||| |||||| || || ||||||||| ||
Sbjct 2120 CCATTGTCCAAGATTCCCCACTGCAGCCCCCCGTGGGAGTCCGGGCCCTGTCTCAGTCCC 2179
Query 119 AGTGTGACTGATCATCCTCTCAGACCAGTTACGGATCGTCGCCTTGGTGAGCCATTACCT 178
|||||| |||||||||| ||||||| || | ||| | | |||||| |||| ||||||
Sbjct 2180 AGTGTGGCTGATCATCCGAAAAGACCAGCTAAGCATCATTGGCTTGGTTAGCCTTTACCT 2239
Query 179 CACCAACTAGCTAATCCGACCTAGGCTCATCTGATAGCGC 218
|||||||| ||||| | || ||||||||| | |||||
Sbjct 2240 GACCAACTACCTAATACTACGCAGGCTCATCAAACAGCGC 2279
>seq3
Length=30470407
Score = 176 bits (194), Expect = 1e-41
Identities = 112/122 (92%), Gaps = 0/122 (0%)
Strand=Plus/Plus
Query 68 AATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGTGACT 127
|| |||||||||||||||||||||||||||||||| |||||||||||| |||||||| ||
Sbjct 688760 AAAATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGGCCGTGTCTCAGTCCCAGTGTGGCT 688819
Query 128 GATCATCCTCTCAGACCAGTTACGGATCGTCGCCTTGGTGAGCCATTACCTCACCAACTA 187
|||||||||||| |||||| ||| |||| |||||||||| ||| ||||||||||||||||
Sbjct 688820 GATCATCCTCTCGGACCAGCTACTGATCATCGCCTTGGTAAGCTATTACCTCACCAACTA 688879
Query 188 GC 189
||
Sbjct 688880 GC 688881
>seq1041
Length=564860
Score = 102 bits (112), Expect = 2e-19
Identities = 77/91 (85%), Gaps = 0/91 (0%)
Strand=Plus/Minus
Query 108 GTCTCAGTTCCAGTGTGACTGATCATCCTCTCAGACCAGTTACGGATCGTCGCCTTGGTG 167
|||||||| |||||||| ||||||||| ||||| | ||| |||| ||||||||||
Sbjct 504919 GTCTCAGTCCCAGTGTGGCTGATCATCTGAAAAGACCTGCTACTGATCATCGCCTTGGTA 504860
Query 168 AGCCATTACCTCACCAACTAGCTAATCCGAC 198
||| ||||||||||||||||||||||| |||
Sbjct 504859 AGCTATTACCTCACCAACTAGCTAATCAGAC 504829
>seq1023
Length=737256
Score = 86.0 bits (94), Expect = 1e-14
Identities = 118/162 (73%), Gaps = 15/162 (9%)
Strand=Plus/Minus
Query 51 GCTTTCGCCCA-TTGTCCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGT 109
|||||| ||| || ||||| |||| ||||||||||||| |||| ||| || |||
Sbjct 565378 GCTTTCACCCTGTTATCCAA-ATTCGAAACTGCTGCCTCCCTCCTGAGTATGGGCCCTGT 565320
Query 110 CTCAGTTCC---------AGTGTGACTGATCATCC-TCTCAGACCAGTTACGGATCGTCG 159
|||||| || ||| || |||||||||| ||||| || || |||| |||
Sbjct 565319 CTCAGTCCCAGTCAGTGTAGTTTGGCTGATCATCCGAAAAAGACCTGTCACTGATCATCG 565260
Query 160 CCTTGGTGAGCCATT---ACCTCACCAACTAGCTAATCCGAC 198
||||| | ||| ||| ||||||||||||||||||| |||
Sbjct 565259 CCTTGCTAAGCTATTGCCTCCTCACCAACTAGCTAATCAGAC 565218
>seq10
Length=33665772
Score = 78.8 bits (86), Expect = 2e-12
Identities = 113/156 (72%), Gaps = 10/156 (6%)
Strand=Plus/Minus
Query 46 ATCAGGCTTTCGCCCATTGTCCAA---TATTCCCCACTGCTGCCTCCCGTAGGAGTCTGG 102
|||||||||||| |||||| || | || |||| | | || ||| ||||||||
Sbjct 20040419 ATCAGGCTTTCGTCCATTGCAAAAAGGTTTTTTTCACTCTTACTTCTTGTATGAGTCTGG 20040360
Query 103 ACCGTGTCTCAGTTCCAGTGTGACTGATCATCCTCTCAGACCAGTTAC-----GGATCGT 157
| | |||||| | |||||||| |||||||| |||||| ||||| ||| |||| |
Sbjct 20040359 ATTGCGTCTCAATACCAGTGTGGCTGATCATTCTCTCAAACCAGCTACTGAATTGATCAT 20040300
Query 158 CGCC-TTGGTGAGCCATTACCTCA-CCAACTAGCTA 191
| || ||||| || |||| |||| | ||| |||||
Sbjct 20040299 CCCCTTTGGTAAGTTATTAACTCATCGAACCAGCTA 20040264
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1071922183520
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |