Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Musa_20acuminata_20subsp._20malaccensis_20[refseq_20GCF_5F000313855. 2_202012-11-14] 7,259 sequences; 472,231,289 total letters Query= AAMG01001213.1 Length=600 Score E Sequences producing significant alignments: (Bits) Value seq5789 183 1e-43 seq1376 181 4e-43 seq6 120 1e-24 >seq5789 Length=6742 Score = 183 bits (202), Expect = 1e-43 Identities = 366/532 (69%), Gaps = 33/532 (6%) Strand=Plus/Plus Query 56 ATTCGGAGTTTGGTTGATTTCGGTAAGCTTGTGGGCCCCCTAGACCATCCAGTGCTCTAC 115 ||||||||||| ||| | |||||| |||| | |||||| |||| |||||||||| Sbjct 4499 ATTCGGAGTTTCCCTGAGGTTGGTAAGGC-GTGGCCACCCTAGCCCATTGAGTGCTCTAC 4557 Query 116 CTCCGGGAAGAAACACGCGACGCTGCACCTAAATGCATTTCGGGGAGAACCAGCTATCAC 175 ||| || | || ||||| || |||| |||||| ||| |||||||||| | Sbjct 4558 CTCGGGCCATCGACTTCATACGCTCTACTGAAATAGATTTCGCGGAAAACCAGCTATATC 4617 Query 176 GAAGTTTGATTGGCCTTTCACCCCTATCCACAGGTCATCCCCTCAGTTTTCAACCTAAGT 235 | ||| ||||||||||||||||| ||||| ||||||||| | ||| | || || || Sbjct 4618 CGATCTTGGTTGGCCTTTCACCCCTAGCCACAAGTCATCCCCGTATTTTGCCACATACGT 4677 Query 236 GGGTTCGGTCCTCCACG--CGGTCTTACCCGCGCTTCAACCTGCCCATGGATAGATCACT 293 ||||||||||||||| | | || | | | | ||||||||||| ||||| |||||| | Sbjct 4678 GGGTTCGGTCCTCCAAGGCCTGTGTGA-GCTCTCTTCAACCTGCTCATGGCTAGATCGAT 4736 Query 294 TCGCTTCGGGTCTTGATCGTGCCACTCATACGCCCT--ATTCGGACTCGCTTTCGCTA-C 350 | ||||||| | | | | | || | || | | || | | | | Sbjct 4737 CGGTTTCGGGT----------CAAATAGGAAGAACTAGAATCTTA-TATCTCTGGAAAGC 4785 Query 351 GGCTACCCCACACGGGTTAA-CCTCGCGACACAACGCAAACTCGCAGGCTCATTCTTCAA 409 | |||| || | || |||| || | | || | ||||| | | ||| | ||| Sbjct 4786 GCCTACACCTAATGGCTTAAGCCGCTGTTCCCATTTC---CTCGCTGACCCATCATGCAA 4842 Query 410 AAGGCACGCCGTCA-CCTG-GTACCTAAAAGGCACTTCAGCTCCGACGGATTGTAGGCAC 467 |||| ||||||| | || || | || || | || |||| |||||| ||| Sbjct 4843 AAGGTACGCCGTTAGAGTGAGTGC-------GCTCTGCTCCTTCGACTGATTGTTTGCAT 4895 Query 468 ATGGTTTCAGGT--ACTATTTCACTCCCCGCCAGGGGTACTTTTCACCTTTCCCTCACGG 525 | | |||||| ||||| ||||||||| ||||| ||||||||||||||||||||| Sbjct 4896 CGGATCTCAGGTTATCTATTGCACTCCCCGATTGGGGTTCTTTTCACCTTTCCCTCACGG 4955 Query 526 TACTTGTCCGCTATCGGTCACCAAGGAGTATTTAGGCTTAACGGGTGGTCCC 577 ||||||| |||||| ||||| |||| || ||||||||| |||||||||| Sbjct 4956 TACTTGTACGCTATTGGTCATTGAGGAATACTTAGGCTTAGAGGGTGGTCCC 5007 >seq1376 Length=180402 Score = 181 bits (200), Expect = 4e-43 Identities = 263/365 (72%), Gaps = 26/365 (7%) Strand=Plus/Plus Query 137 GCTGCACCTAAATGCATTTCGGGGAGAACCAGCTATCACGAAGTTTGATTGGCCTTTCAC 196 ||||| ||| || |||||||||||||||||||||| | | ||| || |||| |||||| Sbjct 85229 GCTGCGCCTCAACGCATTTCGGGGAGAACCAGCTAGCTCTGGGTTCGAGTGGCATTTCAC 85288 Query 197 CCCTATCCACAGGTCATCCCCTCAGTTTTCAACCTAAGTGGGTTCGGTCCTCCACGCGGT 256 ||||| ||||| |||||| || | | |||||| | ||| ||||||| ||||||| || Sbjct 85289 CCCTAACCACAACTCATCCGCTGATTCTTCAACATCAGTCGGTTCGGACCTCCACTTAGT 85348 Query 257 CTTACCCGCGCTTCAACCTGCCCATGGATAGATCACTTCGCTTCGGGT-CTTGATC-GTG 314 | |||| |||||| |||| |||||||||||||| | ||||||| | | | | ||| Sbjct 85349 TTCACCCAAGCTTCATCCTGGTCATGGATAGATCACCCAGGTTCGGGTCCATAAGCAGTG 85408 Query 315 CCACTCATACGCCCTATTCGGACTCGCTTTCGCTACGGCTACCCCACACGG----GTTAA 370 || | |||||||| |||||||||||||||||||| || || |||| Sbjct 85409 ACAAT----CGCCCTATGAAGACTCGCTTTCGCTACGGCT---CCGGTGGGTTCCCTTAA 85461 Query 371 CCTCGCGACACAACGCA-AACTCGCAGGCTCATTCTTCAAAAGGCACGCCGTCACCTGGT 429 || || ||| | | | |||| |||||||||||||| |||||||| |||| Sbjct 85462 CCAAGC--CACTGCCTATGAGTCGCCGGCTCATTCTTCAACAGGCACGCGGTCA------ 85513 Query 430 ACCTAAAAGGCACTTCAGCTCCGACGGATTGTAGGCACATGGTTTCAGGTACTATTTCAC 489 ||| || ||| |||| || | ||| || || ||||||| || ||||||||| Sbjct 85514 ---GAAATCACA-TTCTCCTCCCACTGCTTGGGAGCTCACGGTTTCATGTTCTATTTCAC 85569 Query 490 TCCCC 494 ||||| Sbjct 85570 TCCCC 85574 >seq6 Length=34899179 Score = 120 bits (132), Expect = 1e-24 Identities = 290/434 (67%), Gaps = 30/434 (7%) Strand=Plus/Plus Query 143 CCTAAATGCATTTCGGGGAGAACCAGCTATCACGAAGTTTGATTGGCCTTTCACC--CCT 200 ||| || ||||||||| ||||||||||| | | | | || ||| ||| ||| ||| Sbjct 5902907 CCTCAACACATTTCGGGAAGAACCAGCTAGCTCTGGGCTCGAGAGGCATTTGACCGCCCT 5902966 Query 201 ATCCACAGGTCATCCCCTCAGTTTTCAACCTAAGTGGGTTCGGTCCTCCACGCGGTCTTA 260 | ||||| |||| | | | | |||||| | ||| |||| || ||| | || | | Sbjct 5902967 AACCACAACTCATTCATTGATTCTTCAACATCAGTCGGTTTGGACCTTTGCTTAGTTTCA 5903026 Query 261 CCCGCGCTTCAACCTGCCCATGGATAGATCACTTCGCTTCGGGT-CTTGA-TCGTGCCAC 318 ||| |||||| ||| |||||||||||||| | | || |||| | | | | ||| || Sbjct 5903027 CCCAAGCTTCATGCTGGTCATGGATAGATCACCTAGGTTTGGGTTCATAAGTAGTGACAA 5903086 Query 319 TCATACGCCCTATTCGGACTCGCTTTCGCTACGGCTACCCCACACGGGT----TAACCTC 374 || | | ||| || ||||||| ||||||||| || || | ||||| Sbjct 5903087 TCGTTC----TATGAAGATTCGCTTTTGCTACGGCT---CCGGTTGGTTACCTTAACCAA 5903139 Query 375 GCGACACAACGCAAAC---TCGCAGGCTCATTCTTCAAAAGGCACGCCGTCACCTGGTAC 431 || | || || | ||| |||||||||||| || ||| || Sbjct 5903140 GCCAGCCATTGCCTATGAGTCGTCAACTCATTCTTCAATAGACACATTGT---------- 5903189 Query 432 CTAAAAGGCAC-TTCAGCTCCGACGGATTGTAGGCACATGGTTTCAGGTACTATTTCACT 490 || || ||| ||| || | | | || | || ||||||| || |||||||||| Sbjct 5903190 -TAGAAATCACATTCTCCTTCCATTGCATGGGAACTCACGGTTTCATGTTCTATTTCACT 5903248 Query 491 CCCCGCCAGGGGTACTTTTCACCTTTCCCTCACGGTACTTGTCCGCTATCGGTCACCAAG 550 ||||| ||||| ||||||||||||||||||||||||| | |||||| ||| ||| | Sbjct 5903249 CCCCGATGGGGGTTCTTTTCACCTTTCCCTCACGGTACTACTTCGCTATTGGTGACCCCG 5903308 Query 551 GAGTATTTAGGCTT 564 |||||||||| ||| Sbjct 5903309 GAGTATTTAGCCTT 5903322 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1817468060416