Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Musa_20acuminata_20subsp._20malaccensis_20[refseq_20GCF_5F000313855.
2_202012-11-14] 7,259 sequences; 472,231,289 total letters
Query= AAMG01001213.1
Length=600
Score E
Sequences producing significant alignments: (Bits) Value
seq5789 183 1e-43
seq1376 181 4e-43
seq6 120 1e-24
>seq5789
Length=6742
Score = 183 bits (202), Expect = 1e-43
Identities = 366/532 (69%), Gaps = 33/532 (6%)
Strand=Plus/Plus
Query 56 ATTCGGAGTTTGGTTGATTTCGGTAAGCTTGTGGGCCCCCTAGACCATCCAGTGCTCTAC 115
||||||||||| ||| | |||||| |||| | |||||| |||| ||||||||||
Sbjct 4499 ATTCGGAGTTTCCCTGAGGTTGGTAAGGC-GTGGCCACCCTAGCCCATTGAGTGCTCTAC 4557
Query 116 CTCCGGGAAGAAACACGCGACGCTGCACCTAAATGCATTTCGGGGAGAACCAGCTATCAC 175
||| || | || ||||| || |||| |||||| ||| |||||||||| |
Sbjct 4558 CTCGGGCCATCGACTTCATACGCTCTACTGAAATAGATTTCGCGGAAAACCAGCTATATC 4617
Query 176 GAAGTTTGATTGGCCTTTCACCCCTATCCACAGGTCATCCCCTCAGTTTTCAACCTAAGT 235
| ||| ||||||||||||||||| ||||| ||||||||| | ||| | || || ||
Sbjct 4618 CGATCTTGGTTGGCCTTTCACCCCTAGCCACAAGTCATCCCCGTATTTTGCCACATACGT 4677
Query 236 GGGTTCGGTCCTCCACG--CGGTCTTACCCGCGCTTCAACCTGCCCATGGATAGATCACT 293
||||||||||||||| | | || | | | | ||||||||||| ||||| |||||| |
Sbjct 4678 GGGTTCGGTCCTCCAAGGCCTGTGTGA-GCTCTCTTCAACCTGCTCATGGCTAGATCGAT 4736
Query 294 TCGCTTCGGGTCTTGATCGTGCCACTCATACGCCCT--ATTCGGACTCGCTTTCGCTA-C 350
| ||||||| | | | | | || | || | | || | | | |
Sbjct 4737 CGGTTTCGGGT----------CAAATAGGAAGAACTAGAATCTTA-TATCTCTGGAAAGC 4785
Query 351 GGCTACCCCACACGGGTTAA-CCTCGCGACACAACGCAAACTCGCAGGCTCATTCTTCAA 409
| |||| || | || |||| || | | || | ||||| | | ||| | |||
Sbjct 4786 GCCTACACCTAATGGCTTAAGCCGCTGTTCCCATTTC---CTCGCTGACCCATCATGCAA 4842
Query 410 AAGGCACGCCGTCA-CCTG-GTACCTAAAAGGCACTTCAGCTCCGACGGATTGTAGGCAC 467
|||| ||||||| | || || | || || | || |||| |||||| |||
Sbjct 4843 AAGGTACGCCGTTAGAGTGAGTGC-------GCTCTGCTCCTTCGACTGATTGTTTGCAT 4895
Query 468 ATGGTTTCAGGT--ACTATTTCACTCCCCGCCAGGGGTACTTTTCACCTTTCCCTCACGG 525
| | |||||| ||||| ||||||||| ||||| |||||||||||||||||||||
Sbjct 4896 CGGATCTCAGGTTATCTATTGCACTCCCCGATTGGGGTTCTTTTCACCTTTCCCTCACGG 4955
Query 526 TACTTGTCCGCTATCGGTCACCAAGGAGTATTTAGGCTTAACGGGTGGTCCC 577
||||||| |||||| ||||| |||| || ||||||||| ||||||||||
Sbjct 4956 TACTTGTACGCTATTGGTCATTGAGGAATACTTAGGCTTAGAGGGTGGTCCC 5007
>seq1376
Length=180402
Score = 181 bits (200), Expect = 4e-43
Identities = 263/365 (72%), Gaps = 26/365 (7%)
Strand=Plus/Plus
Query 137 GCTGCACCTAAATGCATTTCGGGGAGAACCAGCTATCACGAAGTTTGATTGGCCTTTCAC 196
||||| ||| || |||||||||||||||||||||| | | ||| || |||| ||||||
Sbjct 85229 GCTGCGCCTCAACGCATTTCGGGGAGAACCAGCTAGCTCTGGGTTCGAGTGGCATTTCAC 85288
Query 197 CCCTATCCACAGGTCATCCCCTCAGTTTTCAACCTAAGTGGGTTCGGTCCTCCACGCGGT 256
||||| ||||| |||||| || | | |||||| | ||| ||||||| ||||||| ||
Sbjct 85289 CCCTAACCACAACTCATCCGCTGATTCTTCAACATCAGTCGGTTCGGACCTCCACTTAGT 85348
Query 257 CTTACCCGCGCTTCAACCTGCCCATGGATAGATCACTTCGCTTCGGGT-CTTGATC-GTG 314
| |||| |||||| |||| |||||||||||||| | ||||||| | | | | |||
Sbjct 85349 TTCACCCAAGCTTCATCCTGGTCATGGATAGATCACCCAGGTTCGGGTCCATAAGCAGTG 85408
Query 315 CCACTCATACGCCCTATTCGGACTCGCTTTCGCTACGGCTACCCCACACGG----GTTAA 370
|| | |||||||| |||||||||||||||||||| || || ||||
Sbjct 85409 ACAAT----CGCCCTATGAAGACTCGCTTTCGCTACGGCT---CCGGTGGGTTCCCTTAA 85461
Query 371 CCTCGCGACACAACGCA-AACTCGCAGGCTCATTCTTCAAAAGGCACGCCGTCACCTGGT 429
|| || ||| | | | |||| |||||||||||||| |||||||| ||||
Sbjct 85462 CCAAGC--CACTGCCTATGAGTCGCCGGCTCATTCTTCAACAGGCACGCGGTCA------ 85513
Query 430 ACCTAAAAGGCACTTCAGCTCCGACGGATTGTAGGCACATGGTTTCAGGTACTATTTCAC 489
||| || ||| |||| || | ||| || || ||||||| || |||||||||
Sbjct 85514 ---GAAATCACA-TTCTCCTCCCACTGCTTGGGAGCTCACGGTTTCATGTTCTATTTCAC 85569
Query 490 TCCCC 494
|||||
Sbjct 85570 TCCCC 85574
>seq6
Length=34899179
Score = 120 bits (132), Expect = 1e-24
Identities = 290/434 (67%), Gaps = 30/434 (7%)
Strand=Plus/Plus
Query 143 CCTAAATGCATTTCGGGGAGAACCAGCTATCACGAAGTTTGATTGGCCTTTCACC--CCT 200
||| || ||||||||| ||||||||||| | | | | || ||| ||| ||| |||
Sbjct 5902907 CCTCAACACATTTCGGGAAGAACCAGCTAGCTCTGGGCTCGAGAGGCATTTGACCGCCCT 5902966
Query 201 ATCCACAGGTCATCCCCTCAGTTTTCAACCTAAGTGGGTTCGGTCCTCCACGCGGTCTTA 260
| ||||| |||| | | | | |||||| | ||| |||| || ||| | || | |
Sbjct 5902967 AACCACAACTCATTCATTGATTCTTCAACATCAGTCGGTTTGGACCTTTGCTTAGTTTCA 5903026
Query 261 CCCGCGCTTCAACCTGCCCATGGATAGATCACTTCGCTTCGGGT-CTTGA-TCGTGCCAC 318
||| |||||| ||| |||||||||||||| | | || |||| | | | | ||| ||
Sbjct 5903027 CCCAAGCTTCATGCTGGTCATGGATAGATCACCTAGGTTTGGGTTCATAAGTAGTGACAA 5903086
Query 319 TCATACGCCCTATTCGGACTCGCTTTCGCTACGGCTACCCCACACGGGT----TAACCTC 374
|| | | ||| || ||||||| ||||||||| || || | |||||
Sbjct 5903087 TCGTTC----TATGAAGATTCGCTTTTGCTACGGCT---CCGGTTGGTTACCTTAACCAA 5903139
Query 375 GCGACACAACGCAAAC---TCGCAGGCTCATTCTTCAAAAGGCACGCCGTCACCTGGTAC 431
|| | || || | ||| |||||||||||| || ||| ||
Sbjct 5903140 GCCAGCCATTGCCTATGAGTCGTCAACTCATTCTTCAATAGACACATTGT---------- 5903189
Query 432 CTAAAAGGCAC-TTCAGCTCCGACGGATTGTAGGCACATGGTTTCAGGTACTATTTCACT 490
|| || ||| ||| || | | | || | || ||||||| || ||||||||||
Sbjct 5903190 -TAGAAATCACATTCTCCTTCCATTGCATGGGAACTCACGGTTTCATGTTCTATTTCACT 5903248
Query 491 CCCCGCCAGGGGTACTTTTCACCTTTCCCTCACGGTACTTGTCCGCTATCGGTCACCAAG 550
||||| ||||| ||||||||||||||||||||||||| | |||||| ||| ||| |
Sbjct 5903249 CCCCGATGGGGGTTCTTTTCACCTTTCCCTCACGGTACTACTTCGCTATTGGTGACCCCG 5903308
Query 551 GAGTATTTAGGCTT 564
|||||||||| |||
Sbjct 5903309 GAGTATTTAGCCTT 5903322
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1817468060416
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |