Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Musa_20acuminata_20subsp._20malaccensis_20[refseq_20GCF_5F000313855. 2_202012-11-14] 7,259 sequences; 472,231,289 total letters Query= AAMG01001291.1 Length=420 Score E Sequences producing significant alignments: (Bits) Value seq1376 141 2e-31 seq5789 122 2e-25 seq6 109 1e-21 seq3 77.0 8e-12 >seq1376 Length=180402 Score = 141 bits (156), Expect = 2e-31 Identities = 214/290 (74%), Gaps = 12/290 (4%) Strand=Plus/Plus Query 9 CCACAGGTCATTCCGCTAACTTTTTCAACGGTAGTCGGTTCGGTCCTCCAGTTAGTAGTT 68 ||||| |||| ||||| | || |||||| ||||||||||| |||||| ||||| | Sbjct 85295 CCACAACTCAT-CCGCTGA-TTCTTCAACATCAGTCGGTTCGGACCTCCACTTAGTT-TC 85351 Query 69 ACCCAACCTTTCAACCTGCCCATAGGATAGATCGCCCGGTTTTCGGGTCTATTTCCCAGC 128 |||||| ||| || |||| ||| ||||||||| ||| | || |||||| || | || Sbjct 85352 ACCCAAGCTT-CATCCTGGTCAT-GGATAGATCACCCAGGTT-CGGGTCCATAAGC-AGT 85407 Query 129 GACTAGACGCCCTAGTAAGACTCGCTTTTCGCTACGCCTCCCCTA--TTCGGTTAAGCTT 186 ||| | ||||||| |||||||||||| ||||||| |||| | ||| |||| | Sbjct 85408 GACAAT-CGCCCTATGAAGACTCGCTTT-CGCTACGGCTCCGGTGGGTTCCCTTAACCAA 85465 Query 187 TGCCACTGAAAATAAGTCGCTGACCCATTATACAAAAGGTACGCAGTCACCCAACAAAGT 246 ||||||| || |||||| | | |||| | ||| ||| |||| |||| | || | | Sbjct 85466 -GCCACTGCCTATGAGTCGCCGGCTCATTCTTCAACAGGCACGCGGTCAGAAATCACATT 85524 Query 247 GGGCTCCCACTGCTTGTACGCATACGGTTTCAGGATCTATTTCACTCCCC 296 ||||||||||||| || ||||||||| | ||||||||||||||| Sbjct 85525 CTCCTCCCACTGCTTGGGAGCTCACGGTTTCATGTTCTATTTCACTCCCC 85574 >seq5789 Length=6742 Score = 122 bits (134), Expect = 2e-25 Identities = 142/190 (75%), Gaps = 14/190 (7%) Strand=Plus/Plus Query 203 TCGCTGACCCATTATACAAAAGGTACGCAGTCACCCAACAAAGTGGGCTC--------CC 254 |||||||||||| || |||||||||||| || | | |||| |||| | Sbjct 4824 TCGCTGACCCATCATGCAAAAGGTACGCCGTTAG---AGTGAGTGCGCTCTGCTCCTTCG 4880 Query 255 ACTGCTTGTACGCATACGGTTTCAGG--ATCTATTTCACTCCCCTCTCCGGGGTTCTTTT 312 |||| |||| |||| | | ||||| ||||||| |||||||| | ||||||||||| Sbjct 4881 ACTGATTGTTTGCATCGGATCTCAGGTTATCTATTGCACTCCCCGATT-GGGGTTCTTTT 4939 Query 313 CGCCTTTCCCTCACGGTACTAGTTCACTATCGGTCAGTCAGTAGTATTTAGCCTTGGAGG 372 | |||||||||||||||||| || | |||| ||||| | || | || |||| ||| |||| Sbjct 4940 CACCTTTCCCTCACGGTACTTGTACGCTATTGGTCATTGAGGAATACTTAGGCTTAGAGG 4999 Query 373 ATGGTCCCCC 382 ||||||||| Sbjct 5000 GTGGTCCCCC 5009 >seq6 Length=34899179 Score = 109 bits (120), Expect = 1e-21 Identities = 91/110 (83%), Gaps = 1/110 (1%) Strand=Plus/Plus Query 270 ACGGTTTCAGGATCTATTTCACTCCCCTCTCCGGGGTTCTTTTCGCCTTTCCCTCACGGT 329 ||||||||| | ||||||||||||||| | |||||||||||| ||||||||||||||| Sbjct 5903226 ACGGTTTCATGTTCTATTTCACTCCCCGATG-GGGGTTCTTTTCACCTTTCCCTCACGGT 5903284 Query 330 ACTAGTTCACTATCGGTCAGTCAGTAGTATTTAGCCTTGGAGGATGGTCC 379 |||| ||| |||| ||| | | | |||||||||||||| | | | |||| Sbjct 5903285 ACTACTTCGCTATTGGTGACCCCGGAGTATTTAGCCTTGCAAGGTAGTCC 5903334 >seq3 Length=30470407 Score = 77.0 bits (84), Expect = 8e-12 Identities = 85/112 (76%), Gaps = 1/112 (1%) Strand=Plus/Plus Query 257 TGCTTGTACGCATACGGTTTCAGGATCTATTTCACTCCCCTCTCCGGGGTTCTTTTCGCC 316 |||||| || ||||||||| || |||||||||| | | ||||||||| || Sbjct 27590960 TGCTTGGGAGCTCACGGTTTCATATTCCATTTCACTCCTTAATT-GTGGTTCTTTTTACC 27591018 Query 317 TTTCCCTCACGGTACTAGTTCACTATCGGTCAGTCAGTAGTATTTAGCCTTG 368 |||| ||||||||||| || ||||||| ||| || |||||||||||||| Sbjct 27591019 TTTCTTTCACGGTACTACTTTACTATCGATCACCCAAGAGTATTTAGCCTTG 27591070 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1241509872256