Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Musa_20acuminata_20subsp._20malaccensis_20[refseq_20GCF_5F000313855.
2_202012-11-14] 7,259 sequences; 472,231,289 total letters
Query= AAMG01001291.1
Length=420
Score E
Sequences producing significant alignments: (Bits) Value
seq1376 141 2e-31
seq5789 122 2e-25
seq6 109 1e-21
seq3 77.0 8e-12
>seq1376
Length=180402
Score = 141 bits (156), Expect = 2e-31
Identities = 214/290 (74%), Gaps = 12/290 (4%)
Strand=Plus/Plus
Query 9 CCACAGGTCATTCCGCTAACTTTTTCAACGGTAGTCGGTTCGGTCCTCCAGTTAGTAGTT 68
||||| |||| ||||| | || |||||| ||||||||||| |||||| ||||| |
Sbjct 85295 CCACAACTCAT-CCGCTGA-TTCTTCAACATCAGTCGGTTCGGACCTCCACTTAGTT-TC 85351
Query 69 ACCCAACCTTTCAACCTGCCCATAGGATAGATCGCCCGGTTTTCGGGTCTATTTCCCAGC 128
|||||| ||| || |||| ||| ||||||||| ||| | || |||||| || | ||
Sbjct 85352 ACCCAAGCTT-CATCCTGGTCAT-GGATAGATCACCCAGGTT-CGGGTCCATAAGC-AGT 85407
Query 129 GACTAGACGCCCTAGTAAGACTCGCTTTTCGCTACGCCTCCCCTA--TTCGGTTAAGCTT 186
||| | ||||||| |||||||||||| ||||||| |||| | ||| |||| |
Sbjct 85408 GACAAT-CGCCCTATGAAGACTCGCTTT-CGCTACGGCTCCGGTGGGTTCCCTTAACCAA 85465
Query 187 TGCCACTGAAAATAAGTCGCTGACCCATTATACAAAAGGTACGCAGTCACCCAACAAAGT 246
||||||| || |||||| | | |||| | ||| ||| |||| |||| | || | |
Sbjct 85466 -GCCACTGCCTATGAGTCGCCGGCTCATTCTTCAACAGGCACGCGGTCAGAAATCACATT 85524
Query 247 GGGCTCCCACTGCTTGTACGCATACGGTTTCAGGATCTATTTCACTCCCC 296
||||||||||||| || ||||||||| | |||||||||||||||
Sbjct 85525 CTCCTCCCACTGCTTGGGAGCTCACGGTTTCATGTTCTATTTCACTCCCC 85574
>seq5789
Length=6742
Score = 122 bits (134), Expect = 2e-25
Identities = 142/190 (75%), Gaps = 14/190 (7%)
Strand=Plus/Plus
Query 203 TCGCTGACCCATTATACAAAAGGTACGCAGTCACCCAACAAAGTGGGCTC--------CC 254
|||||||||||| || |||||||||||| || | | |||| |||| |
Sbjct 4824 TCGCTGACCCATCATGCAAAAGGTACGCCGTTAG---AGTGAGTGCGCTCTGCTCCTTCG 4880
Query 255 ACTGCTTGTACGCATACGGTTTCAGG--ATCTATTTCACTCCCCTCTCCGGGGTTCTTTT 312
|||| |||| |||| | | ||||| ||||||| |||||||| | |||||||||||
Sbjct 4881 ACTGATTGTTTGCATCGGATCTCAGGTTATCTATTGCACTCCCCGATT-GGGGTTCTTTT 4939
Query 313 CGCCTTTCCCTCACGGTACTAGTTCACTATCGGTCAGTCAGTAGTATTTAGCCTTGGAGG 372
| |||||||||||||||||| || | |||| ||||| | || | || |||| ||| ||||
Sbjct 4940 CACCTTTCCCTCACGGTACTTGTACGCTATTGGTCATTGAGGAATACTTAGGCTTAGAGG 4999
Query 373 ATGGTCCCCC 382
|||||||||
Sbjct 5000 GTGGTCCCCC 5009
>seq6
Length=34899179
Score = 109 bits (120), Expect = 1e-21
Identities = 91/110 (83%), Gaps = 1/110 (1%)
Strand=Plus/Plus
Query 270 ACGGTTTCAGGATCTATTTCACTCCCCTCTCCGGGGTTCTTTTCGCCTTTCCCTCACGGT 329
||||||||| | ||||||||||||||| | |||||||||||| |||||||||||||||
Sbjct 5903226 ACGGTTTCATGTTCTATTTCACTCCCCGATG-GGGGTTCTTTTCACCTTTCCCTCACGGT 5903284
Query 330 ACTAGTTCACTATCGGTCAGTCAGTAGTATTTAGCCTTGGAGGATGGTCC 379
|||| ||| |||| ||| | | | |||||||||||||| | | | ||||
Sbjct 5903285 ACTACTTCGCTATTGGTGACCCCGGAGTATTTAGCCTTGCAAGGTAGTCC 5903334
>seq3
Length=30470407
Score = 77.0 bits (84), Expect = 8e-12
Identities = 85/112 (76%), Gaps = 1/112 (1%)
Strand=Plus/Plus
Query 257 TGCTTGTACGCATACGGTTTCAGGATCTATTTCACTCCCCTCTCCGGGGTTCTTTTCGCC 316
|||||| || ||||||||| || |||||||||| | | ||||||||| ||
Sbjct 27590960 TGCTTGGGAGCTCACGGTTTCATATTCCATTTCACTCCTTAATT-GTGGTTCTTTTTACC 27591018
Query 317 TTTCCCTCACGGTACTAGTTCACTATCGGTCAGTCAGTAGTATTTAGCCTTG 368
|||| ||||||||||| || ||||||| ||| || ||||||||||||||
Sbjct 27591019 TTTCTTTCACGGTACTACTTTACTATCGATCACCCAAGAGTATTTAGCCTTG 27591070
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1241509872256
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |