Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Musa_20acuminata_20subsp._20malaccensis_20[refseq_20GCF_5F000313855. 2_202012-11-14] 7,259 sequences; 472,231,289 total letters Query= AAMG01001752.1 Length=400 Score E Sequences producing significant alignments: (Bits) Value seq1376 187 6e-45 seq5789 163 7e-38 seq3 75.2 3e-11 >seq1376 Length=180402 Score = 187 bits (206), Expect = 6e-45 Identities = 179/226 (79%), Gaps = 9/226 (4%) Strand=Plus/Plus Query 179 ACGCTCCCCTACCCAACCAC----ACAGGTTGCCACAGCTTCGGCGGATAACTTAAGCCC 234 ||||||||||||| | || ||| | ||||||||||||| ||| |||| |||| Sbjct 84858 ACGCTCCCCTACCGATGCATTTTTACA---TCCCACAGCTTCGGCAGATCGCTTA-GCCC 84913 Query 235 CGCTACATTATCGGCGCGGAATCACTTGACCAGTGAGCTATTACGCACTCTTTCAAGGAT 294 || | ||| ||||||| | | || || |||||||||||||||||||||||||||| | Sbjct 84914 CGTT-CATCTTCGGCGCAAGAGCGCTCGATCAGTGAGCTATTACGCACTCTTTCAAGGGT 84972 Query 295 GGCTGCTTCCAAGCCAACCTCCTGGTTGTCTACGCAACTCCACATCCTTTCCCACTGAGT 354 ||||||||| | || |||||||||| ||||| ||| | | || |||||| ||||||| Sbjct 84973 GGCTGCTTCTAGGCAAACCTCCTGGCTGTCTCTGCACCCCTACCTCCTTTATCACTGAGC 85032 Query 355 CACCACTTAGGGGCCTTAGCTGATGATCTGGGCTGTTTCCCTCTCG 400 || |||||||||||||||| ||||| ||||||||||||||||| Sbjct 85033 GGTCATTTAGGGGCCTTAGCTGGTGATCCGGGCTGTTTCCCTCTCG 85078 >seq5789 Length=6742 Score = 163 bits (180), Expect = 7e-38 Identities = 152/192 (79%), Gaps = 6/192 (3%) Strand=Plus/Plus Query 212 GCTTCGGCGGATAACTTAAGCCCCGCTACATTATCGGCGC---GGAATCACTTGACCAGT 268 ||||||| | || |||| ||||| | ||||| |||| || ||| || ||||||| Sbjct 4257 GCTTCGGTGAATCACTTGAGCCCTGAGACATTTTCGGTGCTATGGAG---CTAGACCAGT 4313 Query 269 GAGCTATTACGCACTCTTTCAAGGATGGCTGCTTCCAAGCCAACCTCCTGGTTGTCTACG 328 |||||||||||| |||| ||||||||||||||||||||| |||||||||||||| || Sbjct 4314 GAGCTATTACGCTTTCTTCAAAGGATGGCTGCTTCCAAGCCCACCTCCTGGTTGTCATCG 4373 Query 329 CAACTCCACATCCTTTCCCACTGAGTCACCACTTAGGGGCCTTAGCTGATGATCTGGGCT 388 | ||| |||||| ||||| ||| | ||||||| ||||||| | |||||||||| Sbjct 4374 CTCGATCACTTCCTTTTCCACTAAGTGATTGCTTAGGGACCTTAGCGTACGATCTGGGCT 4433 Query 389 GTTTCCCTCTCG 400 |||||||||||| Sbjct 4434 GTTTCCCTCTCG 4445 >seq3 Length=30470407 Score = 75.2 bits (82), Expect = 3e-11 Identities = 96/133 (72%), Gaps = 6/133 (5%) Strand=Plus/Plus Query 266 AGTGAGCTATTACGCACTCTTTCAAGGATGGCTGCTTCCAAGCCAACCTCCTGGTTGTCT 325 |||||||||||| |||||||||||||||| | |||||| |||| ||||| || | | Sbjct 27590620 AGTGAGCTATTATGCACTCTTTCAAGGATCGTTGCTTCTAAGCAAACCTTCTAGCT---- 27590675 Query 326 ACGCAACTCCACATCCTTTCCCACTGAGTCACCACTTAGGGGCCTTAGCTGATGATCTGG 385 ||| | | || | ||| |||||| | | |||| ||||||| || ||||| | Sbjct 27590676 --GCACCCCTACCTTATTTATAGCTGAGTGATTATTTAGATGCCTTAGTTGGTGATCCAG 27590733 Query 386 GCTGTTTCCCTCT 398 ||||||| ||| Sbjct 27590734 ATTGTTTCCATCT 27590746 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1177514518016