Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Musa_20acuminata_20subsp._20malaccensis_20[refseq_20GCF_5F000313855.
2_202012-11-14] 7,259 sequences; 472,231,289 total letters
Query= AAMG01001752.1
Length=400
Score E
Sequences producing significant alignments: (Bits) Value
seq1376 187 6e-45
seq5789 163 7e-38
seq3 75.2 3e-11
>seq1376
Length=180402
Score = 187 bits (206), Expect = 6e-45
Identities = 179/226 (79%), Gaps = 9/226 (4%)
Strand=Plus/Plus
Query 179 ACGCTCCCCTACCCAACCAC----ACAGGTTGCCACAGCTTCGGCGGATAACTTAAGCCC 234
||||||||||||| | || ||| | ||||||||||||| ||| |||| ||||
Sbjct 84858 ACGCTCCCCTACCGATGCATTTTTACA---TCCCACAGCTTCGGCAGATCGCTTA-GCCC 84913
Query 235 CGCTACATTATCGGCGCGGAATCACTTGACCAGTGAGCTATTACGCACTCTTTCAAGGAT 294
|| | ||| ||||||| | | || || |||||||||||||||||||||||||||| |
Sbjct 84914 CGTT-CATCTTCGGCGCAAGAGCGCTCGATCAGTGAGCTATTACGCACTCTTTCAAGGGT 84972
Query 295 GGCTGCTTCCAAGCCAACCTCCTGGTTGTCTACGCAACTCCACATCCTTTCCCACTGAGT 354
||||||||| | || |||||||||| ||||| ||| | | || |||||| |||||||
Sbjct 84973 GGCTGCTTCTAGGCAAACCTCCTGGCTGTCTCTGCACCCCTACCTCCTTTATCACTGAGC 85032
Query 355 CACCACTTAGGGGCCTTAGCTGATGATCTGGGCTGTTTCCCTCTCG 400
|| |||||||||||||||| ||||| |||||||||||||||||
Sbjct 85033 GGTCATTTAGGGGCCTTAGCTGGTGATCCGGGCTGTTTCCCTCTCG 85078
>seq5789
Length=6742
Score = 163 bits (180), Expect = 7e-38
Identities = 152/192 (79%), Gaps = 6/192 (3%)
Strand=Plus/Plus
Query 212 GCTTCGGCGGATAACTTAAGCCCCGCTACATTATCGGCGC---GGAATCACTTGACCAGT 268
||||||| | || |||| ||||| | ||||| |||| || ||| || |||||||
Sbjct 4257 GCTTCGGTGAATCACTTGAGCCCTGAGACATTTTCGGTGCTATGGAG---CTAGACCAGT 4313
Query 269 GAGCTATTACGCACTCTTTCAAGGATGGCTGCTTCCAAGCCAACCTCCTGGTTGTCTACG 328
|||||||||||| |||| ||||||||||||||||||||| |||||||||||||| ||
Sbjct 4314 GAGCTATTACGCTTTCTTCAAAGGATGGCTGCTTCCAAGCCCACCTCCTGGTTGTCATCG 4373
Query 329 CAACTCCACATCCTTTCCCACTGAGTCACCACTTAGGGGCCTTAGCTGATGATCTGGGCT 388
| ||| |||||| ||||| ||| | ||||||| ||||||| | ||||||||||
Sbjct 4374 CTCGATCACTTCCTTTTCCACTAAGTGATTGCTTAGGGACCTTAGCGTACGATCTGGGCT 4433
Query 389 GTTTCCCTCTCG 400
||||||||||||
Sbjct 4434 GTTTCCCTCTCG 4445
>seq3
Length=30470407
Score = 75.2 bits (82), Expect = 3e-11
Identities = 96/133 (72%), Gaps = 6/133 (5%)
Strand=Plus/Plus
Query 266 AGTGAGCTATTACGCACTCTTTCAAGGATGGCTGCTTCCAAGCCAACCTCCTGGTTGTCT 325
|||||||||||| |||||||||||||||| | |||||| |||| ||||| || | |
Sbjct 27590620 AGTGAGCTATTATGCACTCTTTCAAGGATCGTTGCTTCTAAGCAAACCTTCTAGCT---- 27590675
Query 326 ACGCAACTCCACATCCTTTCCCACTGAGTCACCACTTAGGGGCCTTAGCTGATGATCTGG 385
||| | | || | ||| |||||| | | |||| ||||||| || ||||| |
Sbjct 27590676 --GCACCCCTACCTTATTTATAGCTGAGTGATTATTTAGATGCCTTAGTTGGTGATCCAG 27590733
Query 386 GCTGTTTCCCTCT 398
||||||| |||
Sbjct 27590734 ATTGTTTCCATCT 27590746
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1177514518016
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |