Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Musa_20acuminata_20subsp._20malaccensis_20[refseq_20GCF_5F000313855. 2_202012-11-14] 7,259 sequences; 472,231,289 total letters Query= AAMG01001821.1 Length=161 Score E Sequences producing significant alignments: (Bits) Value seq1035 114 1e-23 seq7 100 2e-19 >seq1035 Length=594915 Score = 114 bits (126), Expect = 1e-23 Identities = 122/160 (76%), Gaps = 1/160 (1%) Strand=Plus/Plus Query 2 CGAGTTGCAGACTACAATCCGGACTACGATACACTTTCTGGGATTAGCTCCCCCTCGCGG 61 ||||||||||| |||||||| ||| | | |||||||| ||| |||| ||| | | Sbjct 935 CGAGTTGCAGAGAACAATCCGAACTGAGGCAATCTTTCTGG-ATTCGCTCAGCCTTACTG 993 Query 62 GTTGGCGGCCCTCTGTATGTACCATTGTATGACGTGTGAAGCCCTACCCATAAGGGCCAT 121 | || ||| |||| | |||||||| ||||||| |||| ||||| |||||||| Sbjct 994 CCTTGCTTCCCATTGTAATTGCCATTGTAGCACGTGTGTGGCCCAGCCCATGAGGGCCAT 1053 Query 122 GAGGACTTGACGTCATCCCCACCTTCCTCCGGTTTGTCAC 161 | ||||||||||||||||||||||||||| || | |||| Sbjct 1054 GCTGACTTGACGTCATCCCCACCTTCCTCCAGTATTTCAC 1093 >seq7 Length=28617404 Score = 100 bits (110), Expect = 2e-19 Identities = 118/159 (74%), Gaps = 2/159 (1%) Strand=Plus/Minus Query 2 CGAGTTGCAGACTACAATCCGGACTACGATACACTTTCTGGGATTAGCTCCCCCTCGCGG 61 |||||| ||| | ||||||| |||| | ||| |||| ||||||| |||| | | Sbjct 6713876 CGAGTTACAGCTTGCAATCCGAACTAAGGATGGGTTTTTGGGGTTAGCTCACCCTTGTAG 6713817 Query 62 GTTGGCGGCCCTCTGTATGTACCATTGTATGACGTGTGAAGCCCTACCCATAAGGGCCAT 121 | | ||| ||| ||| ||||||||| || ||| |||| |||||||| ||| Sbjct 6713816 GATTGCGATCCTTTGTCCCGACCATTGTAGCACATGTC--GCCCAGGGCATAAGGGGCAT 6713759 Query 122 GAGGACTTGACGTCATCCCCACCTTCCTCCGGTTTGTCA 160 || ||||||||||||||||||||||||||||| || ||| Sbjct 6713758 GATGACTTGACGTCATCCCCACCTTCCTCCGGCTTATCA 6713720 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 415970746230