Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Musa_20acuminata_20subsp._20malaccensis_20[refseq_20GCF_5F000313855. 2_202012-11-14] 7,259 sequences; 472,231,289 total letters Query= AAMG01001844.1 Length=290 Score E Sequences producing significant alignments: (Bits) Value seq1035 102 1e-19 >seq1035 Length=594915 Score = 102 bits (112), Expect = 1e-19 Identities = 199/289 (69%), Gaps = 10/289 (3%) Strand=Plus/Plus Query 1 CCCACGCTTTCGCGCCTCAGCGTCAGTTACTGTCCAGCAATCCGCCTTCGCCACTGGTGT 60 |||| |||||||| ||||||||||||| ||| | | |||||||| ||| | Sbjct 1745 CCCATGCTTTCGCACCTCAGCGTCAGTAGGGACCCAAAGAGCTGCCTTCGCTTTTGGCCT 1804 Query 61 TCCTCCGTATATCTACGCATTTCACCGCTACACACGGAATTCCGATTGCCTCTCCAGCAC 120 |||| |||| ||||||| |||| ||| ||||||||| ||| | ||||| ||| Sbjct 1805 TCCTTCGTAGATCTACGGATTTAACCCCTACACACGAAATGAAACTCTCCTCTGTCTCAC 1864 Query 121 TCAAGAAAAACAGTTTCAAATGCAGGCTATGGGTT----GAGCCCATAGTTTTCACATCT 176 ||||| || ||||| | ||| | |||| | | | | || || | | Sbjct 1865 TCAAGTGAATTGGTTTCGAGAGCATTCCGCCGGTTTTTGGCGACTTGAACTTGCA-ACCC 1923 Query 177 GACTTGCCTTCCCGCCTACACGCCCTTTACACCCAATAAATCCGGATAACGCTTGCCACC 236 || | | | ||| || ||||||||| || | | | |||| | ||| |||||| || Sbjct 1924 GATTCAC--TGCCG--TAGT-GCCCTTTACGCCTAGTCATTCCGAAGAACACTTGCCCCC 1978 Query 237 TACGTATTACCGCGGCTGCTGGCACGTAGTTAGCCGTGGCTTATTCCTC 285 |||||||||||||||||||||||| |||| |||| ||||| |||||| Sbjct 1979 CCCGTATTACCGCGGCTGCTGGCACGGAGTTTGCCGGGGCTTCTTCCTC 2027 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 828741717489