Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Musa_20acuminata_20subsp._20malaccensis_20[refseq_20GCF_5F000313855.
2_202012-11-14] 7,259 sequences; 472,231,289 total letters
Query= AAMG01001884.1
Length=191
Score E
Sequences producing significant alignments: (Bits) Value
seq4736 122 9e-26
seq4678 122 9e-26
seq2905 122 9e-26
seq600 122 9e-26
seq10 122 9e-26
seq4666 118 1e-24
seq4275 113 5e-23
seq6 91.5 2e-16
>seq4736
Length=15983
Score = 122 bits (134), Expect = 9e-26
Identities = 138/181 (76%), Gaps = 3/181 (2%)
Strand=Plus/Minus
Query 11 CTTTTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGCCTTTGCTC-GAATACATTACCAT 69
|| |||||||||| ||||||||| | |||||||| |||| ||||| | |||||||| | |
Sbjct 2577 CTGTTACTTTGAAGAAATTAGAGTGCTCAAAGCAAGCCTATGCTCTGGATACATTAGCGT 2518
Query 70 GGAATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGGACCGCCCGTAATGA 129
|| |||| | | |||| | |||| ||||| ||| || | ||| || |||||||
Sbjct 2517 GGGATAACATCACAGGATTT-CGGTCCTATTGTGTTGGCCTTCGGGATCGGA-GTAATGA 2460
Query 130 TAAATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAATTCTTGGATTTA 189
| || | ||| ||||||||| | ||||| || |||| ||||||||||||| ||||||
Sbjct 2459 TTAAGAGGGACAGTCGGGGGCATTCGTATTTCATAGTCAGAGGTGAAATTCTTTGATTTA 2400
Query 190 T 190
|
Sbjct 2399 T 2399
>seq4678
Length=16778
Score = 122 bits (134), Expect = 9e-26
Identities = 138/181 (76%), Gaps = 3/181 (2%)
Strand=Plus/Plus
Query 11 CTTTTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGCCTTTGCTC-GAATACATTACCAT 69
|| |||||||||| ||||||||| | |||||||| ||| ||||| | ||||||| |||
Sbjct 13902 CTGTTACTTTGAAGAAATTAGAGTGCTCAAAGCAAGCCCATGCTCTGGATACATTTGCAT 13961
Query 70 GGAATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGGACCGCCCGTAATGA 129
|| |||| | | |||| | |||| ||||| ||| || | ||| || |||||||
Sbjct 13962 GGGATAACATCACAGGATTT-CGGTCCTATTGTGTTGGCCTTCGGGATCGGA-GTAATGA 14019
Query 130 TAAATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAATTCTTGGATTTA 189
| || | ||| ||||||||| | ||||| || |||| ||||||||||||||||||||
Sbjct 14020 TTAAGAGGGACAGTCGGGGGCATTCGTATTTCATAGTCAGAGGTGAAATTCTTGGATTTA 14079
Query 190 T 190
|
Sbjct 14080 T 14080
>seq2905
Length=45512
Score = 122 bits (134), Expect = 9e-26
Identities = 138/181 (76%), Gaps = 3/181 (2%)
Strand=Plus/Plus
Query 11 CTTTTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGCCTTTGCTCGA-ATACATTACCAT 69
|| |||||||||| ||||||||| | |||||||| ||| |||| | |||||||| |||
Sbjct 4300 CTGTTACTTTGAAGAAATTAGAGTGCTCAAAGCAAGCCCACGCTCTAGATACATTAGCAT 4359
Query 70 GGAATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGGACCGCCCGTAATGA 129
|| |||| | | |||| | |||| ||||| ||| || | ||| || |||||||
Sbjct 4360 GGGATAACATCACAGGATTT-CGGTCCTATTGTGTTGGCCTTCGGGATCGGA-GTAATGA 4417
Query 130 TAAATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAATTCTTGGATTTA 189
| || | ||| ||||||||| | ||||| || |||| ||||||||||||||||||||
Sbjct 4418 TTAAGAGGGACAGTCGGGGGCATTCGTATTTCATAGTCAGAGGTGAAATTCTTGGATTTA 4477
Query 190 T 190
|
Sbjct 4478 T 4478
>seq600
Length=3765
Score = 122 bits (134), Expect = 9e-26
Identities = 138/181 (76%), Gaps = 3/181 (2%)
Strand=Plus/Minus
Query 11 CTTTTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGCCTTTGCTC-GAATACATTACCAT 69
|| |||||||||| ||||||||| | |||||||| ||| |||| | |||||||| |||
Sbjct 827 CTGTTACTTTGAAGAAATTAGAGTGCTCAAAGCAAGCCCACGCTCTGGATACATTAGCAT 768
Query 70 GGAATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGGACCGCCCGTAATGA 129
|| |||| | | |||| | |||| ||||| ||| || | ||| || |||||||
Sbjct 767 GGGATAACATCACAGGATTT-CGGTCCTATTGTGTTGGCCTTCGGGATCGGA-GTAATGA 710
Query 130 TAAATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAATTCTTGGATTTA 189
| || | ||| ||||||||| | ||||| || |||| ||||||||||||||||||||
Sbjct 709 TTAAGAGGGACAGTCGGGGGCATTCGTATTTCATAGTCAGAGGTGAAATTCTTGGATTTA 650
Query 190 T 190
|
Sbjct 649 T 649
>seq10
Length=33665772
Score = 122 bits (134), Expect = 9e-26
Identities = 136/178 (76%), Gaps = 3/178 (2%)
Strand=Plus/Minus
Query 14 TTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGCCTTTGCTC-GAATACATTACCATGGA 72
|||||||||| ||||||||| | |||||||| ||| |||| | |||||||| |||||
Sbjct 6134556 TTACTTTGAAGAAATTAGAGTGCTCAAAGCAAGCCCACGCTCTGGATACATTAGCATGGG 6134497
Query 73 ATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGGACCGCCCGTAATGATAA 132
|||| | | |||| | |||| ||||| ||| || | ||| || |||||||| |
Sbjct 6134496 ATAACATCACAGGATTT-CGGTCCTATTGTGTTGGCCTTCGGGATCGGA-GTAATGATTA 6134439
Query 133 ATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAATTCTTGGATTTAT 190
| | ||| ||||||||| | ||||| || |||| |||||||||||||||||||||
Sbjct 6134438 AGAGGGACAGTCGGGGGCATTCGTATTTCATAGTCAGAGGTGAAATTCTTGGATTTAT 6134381
>seq4666
Length=16983
Score = 118 bits (130), Expect = 1e-24
Identities = 137/181 (76%), Gaps = 3/181 (2%)
Strand=Plus/Plus
Query 11 CTTTTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGCCTTTGCTC-GAATACATTACCAT 69
|| |||||||||| ||||||||| | |||||| | ||| |||| | |||||||| |||
Sbjct 2648 CTGTTACTTTGAAGAAATTAGAGTGCTCAAAGTAAGCCCACGCTCTGGATACATTAGCAT 2707
Query 70 GGAATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGGACCGCCCGTAATGA 129
|| |||| | | |||| | | || ||||| ||| || | ||| || |||||||
Sbjct 2708 GGGATAACATCACAGGATTT-CAGTCCTATTGTGTTGGCCTTCGGGATCGGA-GTAATGA 2765
Query 130 TAAATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAATTCTTGGATTTA 189
| || | ||||||||||||| | ||||| || |||| ||||||||||||||||||||
Sbjct 2766 TTAAGAGGGATAGTCGGGGGCATTCGTATTTCATAGTCAGAGGTGAAATTCTTGGATTTA 2825
Query 190 T 190
|
Sbjct 2826 T 2826
>seq4275
Length=21226
Score = 113 bits (124), Expect = 5e-23
Identities = 134/178 (75%), Gaps = 3/178 (2%)
Strand=Plus/Minus
Query 14 TTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGCCTTTGCTC-GAATACATTACCATGGA 72
|||||||||| ||||||||| | |||||||| ||| |||| | |||||||| |||||
Sbjct 14787 TTACTTTGAAGAAATTAGAGTGCTCAAAGCAAGCCCACGCTCTGGATACATTAGCATGGG 14728
Query 73 ATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGGACCGCCCGTAATGATAA 132
|||| | | |||| | |||| ||||| ||| || | ||| | |||| ||| |
Sbjct 14727 ATAACATTACAGGATTT-CGGTCCTATTGTGTTGGCCTTCGGGATCAGA-GTAACGATTA 14670
Query 133 ATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAATTCTTGGATTTAT 190
| | ||| ||||||||| | ||||| || |||| |||||||||||||||||||||
Sbjct 14669 AGAGGGACAGTCGGGGGCATTCGTATTTCATAGTCAGAGGTGAAATTCTTGGATTTAT 14612
>seq6
Length=34899179
Score = 91.5 bits (100), Expect = 2e-16
Identities = 131/181 (72%), Gaps = 3/181 (2%)
Strand=Plus/Minus
Query 11 CTTTTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGCCTTTGCTC-GAATACATTACCAT 69
|| |||||| || ||||||||| | |||||||| || |||| | |||||||| |||
Sbjct 3943556 CTGTTACTTAAAAGAAATTAGAGTGCTCAAAGCAAACCCACGCTCTGGATACATTAGCAT 3943497
Query 70 GGAATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGGACCGCCCGTAATGA 129
|| |||| | | | || | || | ||||| ||| || | ||| || |||||||
Sbjct 3943496 GGGATAACATCACAAGATTT-CGATCCTATTGTGTTGGCCTTCGGGATCGGA-GTAATGA 3943439
Query 130 TAAATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAATTCTTGGATTTA 189
| || | ||||||||||||| | ||||| || |||| |||||||||| || |||||
Sbjct 3943438 TTAAGAAGGATAGTCGGGGGCATTCGTATTTCATAGTCAGAGGTGAAATTATTATATTTA 3943379
Query 190 T 190
|
Sbjct 3943378 T 3943378
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 511963995360
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |