Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Musa_20acuminata_20subsp._20malaccensis_20[refseq_20GCF_5F000313855. 2_202012-11-14] 7,259 sequences; 472,231,289 total letters Query= AAMG01001884.1 Length=191 Score E Sequences producing significant alignments: (Bits) Value seq4736 122 9e-26 seq4678 122 9e-26 seq2905 122 9e-26 seq600 122 9e-26 seq10 122 9e-26 seq4666 118 1e-24 seq4275 113 5e-23 seq6 91.5 2e-16 >seq4736 Length=15983 Score = 122 bits (134), Expect = 9e-26 Identities = 138/181 (76%), Gaps = 3/181 (2%) Strand=Plus/Minus Query 11 CTTTTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGCCTTTGCTC-GAATACATTACCAT 69 || |||||||||| ||||||||| | |||||||| |||| ||||| | |||||||| | | Sbjct 2577 CTGTTACTTTGAAGAAATTAGAGTGCTCAAAGCAAGCCTATGCTCTGGATACATTAGCGT 2518 Query 70 GGAATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGGACCGCCCGTAATGA 129 || |||| | | |||| | |||| ||||| ||| || | ||| || ||||||| Sbjct 2517 GGGATAACATCACAGGATTT-CGGTCCTATTGTGTTGGCCTTCGGGATCGGA-GTAATGA 2460 Query 130 TAAATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAATTCTTGGATTTA 189 | || | ||| ||||||||| | ||||| || |||| ||||||||||||| |||||| Sbjct 2459 TTAAGAGGGACAGTCGGGGGCATTCGTATTTCATAGTCAGAGGTGAAATTCTTTGATTTA 2400 Query 190 T 190 | Sbjct 2399 T 2399 >seq4678 Length=16778 Score = 122 bits (134), Expect = 9e-26 Identities = 138/181 (76%), Gaps = 3/181 (2%) Strand=Plus/Plus Query 11 CTTTTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGCCTTTGCTC-GAATACATTACCAT 69 || |||||||||| ||||||||| | |||||||| ||| ||||| | ||||||| ||| Sbjct 13902 CTGTTACTTTGAAGAAATTAGAGTGCTCAAAGCAAGCCCATGCTCTGGATACATTTGCAT 13961 Query 70 GGAATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGGACCGCCCGTAATGA 129 || |||| | | |||| | |||| ||||| ||| || | ||| || ||||||| Sbjct 13962 GGGATAACATCACAGGATTT-CGGTCCTATTGTGTTGGCCTTCGGGATCGGA-GTAATGA 14019 Query 130 TAAATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAATTCTTGGATTTA 189 | || | ||| ||||||||| | ||||| || |||| |||||||||||||||||||| Sbjct 14020 TTAAGAGGGACAGTCGGGGGCATTCGTATTTCATAGTCAGAGGTGAAATTCTTGGATTTA 14079 Query 190 T 190 | Sbjct 14080 T 14080 >seq2905 Length=45512 Score = 122 bits (134), Expect = 9e-26 Identities = 138/181 (76%), Gaps = 3/181 (2%) Strand=Plus/Plus Query 11 CTTTTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGCCTTTGCTCGA-ATACATTACCAT 69 || |||||||||| ||||||||| | |||||||| ||| |||| | |||||||| ||| Sbjct 4300 CTGTTACTTTGAAGAAATTAGAGTGCTCAAAGCAAGCCCACGCTCTAGATACATTAGCAT 4359 Query 70 GGAATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGGACCGCCCGTAATGA 129 || |||| | | |||| | |||| ||||| ||| || | ||| || ||||||| Sbjct 4360 GGGATAACATCACAGGATTT-CGGTCCTATTGTGTTGGCCTTCGGGATCGGA-GTAATGA 4417 Query 130 TAAATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAATTCTTGGATTTA 189 | || | ||| ||||||||| | ||||| || |||| |||||||||||||||||||| Sbjct 4418 TTAAGAGGGACAGTCGGGGGCATTCGTATTTCATAGTCAGAGGTGAAATTCTTGGATTTA 4477 Query 190 T 190 | Sbjct 4478 T 4478 >seq600 Length=3765 Score = 122 bits (134), Expect = 9e-26 Identities = 138/181 (76%), Gaps = 3/181 (2%) Strand=Plus/Minus Query 11 CTTTTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGCCTTTGCTC-GAATACATTACCAT 69 || |||||||||| ||||||||| | |||||||| ||| |||| | |||||||| ||| Sbjct 827 CTGTTACTTTGAAGAAATTAGAGTGCTCAAAGCAAGCCCACGCTCTGGATACATTAGCAT 768 Query 70 GGAATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGGACCGCCCGTAATGA 129 || |||| | | |||| | |||| ||||| ||| || | ||| || ||||||| Sbjct 767 GGGATAACATCACAGGATTT-CGGTCCTATTGTGTTGGCCTTCGGGATCGGA-GTAATGA 710 Query 130 TAAATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAATTCTTGGATTTA 189 | || | ||| ||||||||| | ||||| || |||| |||||||||||||||||||| Sbjct 709 TTAAGAGGGACAGTCGGGGGCATTCGTATTTCATAGTCAGAGGTGAAATTCTTGGATTTA 650 Query 190 T 190 | Sbjct 649 T 649 >seq10 Length=33665772 Score = 122 bits (134), Expect = 9e-26 Identities = 136/178 (76%), Gaps = 3/178 (2%) Strand=Plus/Minus Query 14 TTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGCCTTTGCTC-GAATACATTACCATGGA 72 |||||||||| ||||||||| | |||||||| ||| |||| | |||||||| ||||| Sbjct 6134556 TTACTTTGAAGAAATTAGAGTGCTCAAAGCAAGCCCACGCTCTGGATACATTAGCATGGG 6134497 Query 73 ATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGGACCGCCCGTAATGATAA 132 |||| | | |||| | |||| ||||| ||| || | ||| || |||||||| | Sbjct 6134496 ATAACATCACAGGATTT-CGGTCCTATTGTGTTGGCCTTCGGGATCGGA-GTAATGATTA 6134439 Query 133 ATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAATTCTTGGATTTAT 190 | | ||| ||||||||| | ||||| || |||| ||||||||||||||||||||| Sbjct 6134438 AGAGGGACAGTCGGGGGCATTCGTATTTCATAGTCAGAGGTGAAATTCTTGGATTTAT 6134381 >seq4666 Length=16983 Score = 118 bits (130), Expect = 1e-24 Identities = 137/181 (76%), Gaps = 3/181 (2%) Strand=Plus/Plus Query 11 CTTTTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGCCTTTGCTC-GAATACATTACCAT 69 || |||||||||| ||||||||| | |||||| | ||| |||| | |||||||| ||| Sbjct 2648 CTGTTACTTTGAAGAAATTAGAGTGCTCAAAGTAAGCCCACGCTCTGGATACATTAGCAT 2707 Query 70 GGAATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGGACCGCCCGTAATGA 129 || |||| | | |||| | | || ||||| ||| || | ||| || ||||||| Sbjct 2708 GGGATAACATCACAGGATTT-CAGTCCTATTGTGTTGGCCTTCGGGATCGGA-GTAATGA 2765 Query 130 TAAATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAATTCTTGGATTTA 189 | || | ||||||||||||| | ||||| || |||| |||||||||||||||||||| Sbjct 2766 TTAAGAGGGATAGTCGGGGGCATTCGTATTTCATAGTCAGAGGTGAAATTCTTGGATTTA 2825 Query 190 T 190 | Sbjct 2826 T 2826 >seq4275 Length=21226 Score = 113 bits (124), Expect = 5e-23 Identities = 134/178 (75%), Gaps = 3/178 (2%) Strand=Plus/Minus Query 14 TTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGCCTTTGCTC-GAATACATTACCATGGA 72 |||||||||| ||||||||| | |||||||| ||| |||| | |||||||| ||||| Sbjct 14787 TTACTTTGAAGAAATTAGAGTGCTCAAAGCAAGCCCACGCTCTGGATACATTAGCATGGG 14728 Query 73 ATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGGACCGCCCGTAATGATAA 132 |||| | | |||| | |||| ||||| ||| || | ||| | |||| ||| | Sbjct 14727 ATAACATTACAGGATTT-CGGTCCTATTGTGTTGGCCTTCGGGATCAGA-GTAACGATTA 14670 Query 133 ATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAATTCTTGGATTTAT 190 | | ||| ||||||||| | ||||| || |||| ||||||||||||||||||||| Sbjct 14669 AGAGGGACAGTCGGGGGCATTCGTATTTCATAGTCAGAGGTGAAATTCTTGGATTTAT 14612 >seq6 Length=34899179 Score = 91.5 bits (100), Expect = 2e-16 Identities = 131/181 (72%), Gaps = 3/181 (2%) Strand=Plus/Minus Query 11 CTTTTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGCCTTTGCTC-GAATACATTACCAT 69 || |||||| || ||||||||| | |||||||| || |||| | |||||||| ||| Sbjct 3943556 CTGTTACTTAAAAGAAATTAGAGTGCTCAAAGCAAACCCACGCTCTGGATACATTAGCAT 3943497 Query 70 GGAATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGGACCGCCCGTAATGA 129 || |||| | | | || | || | ||||| ||| || | ||| || ||||||| Sbjct 3943496 GGGATAACATCACAAGATTT-CGATCCTATTGTGTTGGCCTTCGGGATCGGA-GTAATGA 3943439 Query 130 TAAATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAATTCTTGGATTTA 189 | || | ||||||||||||| | ||||| || |||| |||||||||| || ||||| Sbjct 3943438 TTAAGAAGGATAGTCGGGGGCATTCGTATTTCATAGTCAGAGGTGAAATTATTATATTTA 3943379 Query 190 T 190 | Sbjct 3943378 T 3943378 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 511963995360