Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Musa_20acuminata_20subsp._20malaccensis_20[refseq_20GCF_5F000313855. 2_202012-11-14] 7,259 sequences; 472,231,289 total letters Query= AAMG01002175.1 Length=414 Score E Sequences producing significant alignments: (Bits) Value seq1035 165 2e-38 seq3 158 3e-36 seq1041 80.6 7e-13 >seq1035 Length=594915 Score = 165 bits (182), Expect = 2e-38 Identities = 153/193 (79%), Gaps = 2/193 (1%) Strand=Plus/Plus Query 4 CTTTACAACCCGAA--GGCCTTCTTCATACACGCGGCATGGCTGCATCAGGCTTGCGCCC 61 |||||||| | ||| | ||||||||| |||||| || |||| ||| ||||| ||||| Sbjct 2062 CTTTACAAGCGGAATTGCCCTTCTTCACTCACGCGATATTGCTGGATCGGGCTTTCGCCC 2121 Query 62 ATTGTGCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAG 121 ||||| ||| |||||||||||| ||| ||||| |||||| || || ||||||||| |||| Sbjct 2122 ATTGTCCAAGATTCCCCACTGCAGCCCCCCGTGGGAGTCCGGGCCCTGTCTCAGTCCCAG 2181 Query 122 TGTGGCTGGTCATCCTCTCAGACCAGCTAGGGATCGTCGCCTAGGTGGGCCATTACCCCG 181 |||||||| |||||| |||||||||| | ||| | | || ||| ||| ||||| Sbjct 2182 TGTGGCTGATCATCCGAAAAGACCAGCTAAGCATCATTGGCTTGGTTAGCCTTTACCTGA 2241 Query 182 CCAACTAGCTAAT 194 ||||||| ||||| Sbjct 2242 CCAACTACCTAAT 2254 >seq3 Length=30470407 Score = 158 bits (174), Expect = 3e-36 Identities = 115/132 (87%), Gaps = 1/132 (1%) Strand=Plus/Plus Query 69 AATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGTGGCT 128 || |||||||||||||||||||||||||||||||| |||||||||||| ||||||||||| Sbjct 688760 AAAATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGGCCGTGTCTCAGTCCCAGTGTGGCT 688819 Query 129 GGTCATCCTCTCAGACCAGCTAGGGATCGTCGCCTAGGTGGGCCATTACCCCGCCAACTA 188 | |||||||||| ||||||||| |||| |||||| ||| || |||||| | ||||||| Sbjct 688820 GATCATCCTCTCGGACCAGCTACTGATCATCGCCTTGGTAAGCTATTACCTCACCAACTA 688879 Query 189 GCTAATCCCATC 200 || || ||| || Sbjct 688880 GC-AAGCCCCTC 688890 >seq1041 Length=564860 Score = 80.6 bits (88), Expect = 7e-13 Identities = 70/87 (80%), Gaps = 0/87 (0%) Strand=Plus/Minus Query 109 GTCTCAGTTCCAGTGTGGCTGGTCATCCTCTCAGACCAGCTAGGGATCGTCGCCTAGGTG 168 |||||||| |||||||||||| ||||| ||||| |||| |||| |||||| ||| Sbjct 504919 GTCTCAGTCCCAGTGTGGCTGATCATCTGAAAAGACCTGCTACTGATCATCGCCTTGGTA 504860 Query 169 GGCCATTACCCCGCCAACTAGCTAATC 195 || |||||| | |||||||||||||| Sbjct 504859 AGCTATTACCTCACCAACTAGCTAATC 504833 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1222311265984