Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Musa_20acuminata_20subsp._20malaccensis_20[refseq_20GCF_5F000313855.
2_202012-11-14] 7,259 sequences; 472,231,289 total letters
Query= AAMG01002175.1
Length=414
Score E
Sequences producing significant alignments: (Bits) Value
seq1035 165 2e-38
seq3 158 3e-36
seq1041 80.6 7e-13
>seq1035
Length=594915
Score = 165 bits (182), Expect = 2e-38
Identities = 153/193 (79%), Gaps = 2/193 (1%)
Strand=Plus/Plus
Query 4 CTTTACAACCCGAA--GGCCTTCTTCATACACGCGGCATGGCTGCATCAGGCTTGCGCCC 61
|||||||| | ||| | ||||||||| |||||| || |||| ||| ||||| |||||
Sbjct 2062 CTTTACAAGCGGAATTGCCCTTCTTCACTCACGCGATATTGCTGGATCGGGCTTTCGCCC 2121
Query 62 ATTGTGCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAG 121
||||| ||| |||||||||||| ||| ||||| |||||| || || ||||||||| ||||
Sbjct 2122 ATTGTCCAAGATTCCCCACTGCAGCCCCCCGTGGGAGTCCGGGCCCTGTCTCAGTCCCAG 2181
Query 122 TGTGGCTGGTCATCCTCTCAGACCAGCTAGGGATCGTCGCCTAGGTGGGCCATTACCCCG 181
|||||||| |||||| |||||||||| | ||| | | || ||| ||| |||||
Sbjct 2182 TGTGGCTGATCATCCGAAAAGACCAGCTAAGCATCATTGGCTTGGTTAGCCTTTACCTGA 2241
Query 182 CCAACTAGCTAAT 194
||||||| |||||
Sbjct 2242 CCAACTACCTAAT 2254
>seq3
Length=30470407
Score = 158 bits (174), Expect = 3e-36
Identities = 115/132 (87%), Gaps = 1/132 (1%)
Strand=Plus/Plus
Query 69 AATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGTGGCT 128
|| |||||||||||||||||||||||||||||||| |||||||||||| |||||||||||
Sbjct 688760 AAAATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGGCCGTGTCTCAGTCCCAGTGTGGCT 688819
Query 129 GGTCATCCTCTCAGACCAGCTAGGGATCGTCGCCTAGGTGGGCCATTACCCCGCCAACTA 188
| |||||||||| ||||||||| |||| |||||| ||| || |||||| | |||||||
Sbjct 688820 GATCATCCTCTCGGACCAGCTACTGATCATCGCCTTGGTAAGCTATTACCTCACCAACTA 688879
Query 189 GCTAATCCCATC 200
|| || ||| ||
Sbjct 688880 GC-AAGCCCCTC 688890
>seq1041
Length=564860
Score = 80.6 bits (88), Expect = 7e-13
Identities = 70/87 (80%), Gaps = 0/87 (0%)
Strand=Plus/Minus
Query 109 GTCTCAGTTCCAGTGTGGCTGGTCATCCTCTCAGACCAGCTAGGGATCGTCGCCTAGGTG 168
|||||||| |||||||||||| ||||| ||||| |||| |||| |||||| |||
Sbjct 504919 GTCTCAGTCCCAGTGTGGCTGATCATCTGAAAAGACCTGCTACTGATCATCGCCTTGGTA 504860
Query 169 GGCCATTACCCCGCCAACTAGCTAATC 195
|| |||||| | ||||||||||||||
Sbjct 504859 AGCTATTACCTCACCAACTAGCTAATC 504833
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1222311265984
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |