Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Musa_20acuminata_20subsp._20malaccensis_20[refseq_20GCF_5F000313855.
2_202012-11-14] 7,259 sequences; 472,231,289 total letters
Query= AAMG01002180.1
Length=500
Score E
Sequences producing significant alignments: (Bits) Value
seq1035 253 6e-65
seq3 152 2e-34
seq1041 96.9 1e-17
>seq1035
Length=594915
Score = 253 bits (280), Expect = 6e-65
Identities = 247/315 (78%), Gaps = 5/315 (2%)
Strand=Plus/Minus
Query 168 ATTAGCTAGTTGGTAAGGTAACGGCTTACCAAGGCGACGATCAGTAGCCGACCTGAGAGG 227
||||| |||||||| |||||| |||| |||||| | | ||| |||| | || ||
Sbjct 2254 ATTAGGTAGTTGGTCAGGTAAAGGCTAACCAAGCCAATGATGCTTAGCTGGTCTTTTCGG 2195
Query 228 GTGATCGGCCACATTGGAACTGAGACACGGTCCAAACTCCTACGGGAGGCAGCAGTGGGG 287
||||| |||||| ||| ||||||||| || || ||||| ||||| ||| |||||||||
Sbjct 2194 ATGATCAGCCACACTGGGACTGAGACAGGGCCCGGACTCCCACGGGGGGCTGCAGTGGGG 2135
Query 288 AATATTGCACAATGGGCAAAAGCCTGATGCAGCAACGCCGCGTGAGCGATGAAGGCC--T 345
||| ||| ||||||||| |||||| ||| |||||| |||||||| || ||||| | |
Sbjct 2134 AATCTTGGACAATGGGCGAAAGCCCGATCCAGCAATATCGCGTGAGTGAAGAAGGGCAAT 2075
Query 346 TCGGGTCGTAAAGCTCTGTCCTCAA--GGAAGATAATGACGGTACTTGAGGAGGAAGCCC 403
|| | | |||||||||| || || | | ||| ||||| | ||| ||||| |||||||
Sbjct 2074 TCCGCTTGTAAAGCTCTTTCGTCGAGTGCGCGATCATGACAGGACTCGAGGAAGAAGCCC 2015
Query 404 CGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGGGCTAGCGTTATCCGGAATTA 463
|||| |||| |||||||||||||||||||||||| |||||| || ||| | |||||| |
Sbjct 2014 CGGCAAACTCCGTGCCAGCAGCCGCGGTAATACGGGGGGGGCAAGTGTTCTTCGGAATGA 1955
Query 464 CTGGGGCGTAAAGGG 478
|| |||||||||||
Sbjct 1954 CT-AGGCGTAAAGGG 1941
>seq3
Length=30470407
Score = 152 bits (168), Expect = 2e-34
Identities = 107/122 (88%), Gaps = 0/122 (0%)
Strand=Plus/Minus
Query 172 GCTAGTTGGTAAGGTAACGGCTTACCAAGGCGACGATCAGTAGCCGACCTGAGAGGGTGA 231
|||||||||| |||||| |||||||||||||| |||||||||| | | |||||| |||
Sbjct 688881 GCTAGTTGGTGAGGTAATAGCTTACCAAGGCGATGATCAGTAGCTGGTCCGAGAGGATGA 688822
Query 232 TCGGCCACATTGGAACTGAGACACGGTCCAAACTCCTACGGGAGGCAGCAGTGGGGAATA 291
|| |||||| ||| |||||||||||| ||| ||||||||||||||||||||||||||||
Sbjct 688821 TCAGCCACACTGGGACTGAGACACGGCCCAGACTCCTACGGGAGGCAGCAGTGGGGAATT 688762
Query 292 TT 293
||
Sbjct 688761 TT 688760
>seq1041
Length=564860
Score = 96.9 bits (106), Expect = 1e-17
Identities = 77/93 (83%), Gaps = 0/93 (0%)
Strand=Plus/Plus
Query 161 GCGTCTGATTAGCTAGTTGGTAAGGTAACGGCTTACCAAGGCGACGATCAGTAGCCGACC 220
||||||||||||||||||||| |||||| |||||||||||||| |||||||||| | |
Sbjct 504827 GCGTCTGATTAGCTAGTTGGTGAGGTAATAGCTTACCAAGGCGATGATCAGTAGCAGGTC 504886
Query 221 TGAGAGGGTGATCGGCCACATTGGAACTGAGAC 253
| | ||||| |||||| ||| ||||||||
Sbjct 504887 TTTTCAGATGATCAGCCACACTGGGACTGAGAC 504919
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1497491289216
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |