Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Musa_20acuminata_20subsp._20malaccensis_20[refseq_20GCF_5F000313855. 2_202012-11-14] 7,259 sequences; 472,231,289 total letters Query= AAMG01002180.1 Length=500 Score E Sequences producing significant alignments: (Bits) Value seq1035 253 6e-65 seq3 152 2e-34 seq1041 96.9 1e-17 >seq1035 Length=594915 Score = 253 bits (280), Expect = 6e-65 Identities = 247/315 (78%), Gaps = 5/315 (2%) Strand=Plus/Minus Query 168 ATTAGCTAGTTGGTAAGGTAACGGCTTACCAAGGCGACGATCAGTAGCCGACCTGAGAGG 227 ||||| |||||||| |||||| |||| |||||| | | ||| |||| | || || Sbjct 2254 ATTAGGTAGTTGGTCAGGTAAAGGCTAACCAAGCCAATGATGCTTAGCTGGTCTTTTCGG 2195 Query 228 GTGATCGGCCACATTGGAACTGAGACACGGTCCAAACTCCTACGGGAGGCAGCAGTGGGG 287 ||||| |||||| ||| ||||||||| || || ||||| ||||| ||| ||||||||| Sbjct 2194 ATGATCAGCCACACTGGGACTGAGACAGGGCCCGGACTCCCACGGGGGGCTGCAGTGGGG 2135 Query 288 AATATTGCACAATGGGCAAAAGCCTGATGCAGCAACGCCGCGTGAGCGATGAAGGCC--T 345 ||| ||| ||||||||| |||||| ||| |||||| |||||||| || ||||| | | Sbjct 2134 AATCTTGGACAATGGGCGAAAGCCCGATCCAGCAATATCGCGTGAGTGAAGAAGGGCAAT 2075 Query 346 TCGGGTCGTAAAGCTCTGTCCTCAA--GGAAGATAATGACGGTACTTGAGGAGGAAGCCC 403 || | | |||||||||| || || | | ||| ||||| | ||| ||||| ||||||| Sbjct 2074 TCCGCTTGTAAAGCTCTTTCGTCGAGTGCGCGATCATGACAGGACTCGAGGAAGAAGCCC 2015 Query 404 CGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGGGCTAGCGTTATCCGGAATTA 463 |||| |||| |||||||||||||||||||||||| |||||| || ||| | |||||| | Sbjct 2014 CGGCAAACTCCGTGCCAGCAGCCGCGGTAATACGGGGGGGGCAAGTGTTCTTCGGAATGA 1955 Query 464 CTGGGGCGTAAAGGG 478 || ||||||||||| Sbjct 1954 CT-AGGCGTAAAGGG 1941 >seq3 Length=30470407 Score = 152 bits (168), Expect = 2e-34 Identities = 107/122 (88%), Gaps = 0/122 (0%) Strand=Plus/Minus Query 172 GCTAGTTGGTAAGGTAACGGCTTACCAAGGCGACGATCAGTAGCCGACCTGAGAGGGTGA 231 |||||||||| |||||| |||||||||||||| |||||||||| | | |||||| ||| Sbjct 688881 GCTAGTTGGTGAGGTAATAGCTTACCAAGGCGATGATCAGTAGCTGGTCCGAGAGGATGA 688822 Query 232 TCGGCCACATTGGAACTGAGACACGGTCCAAACTCCTACGGGAGGCAGCAGTGGGGAATA 291 || |||||| ||| |||||||||||| ||| |||||||||||||||||||||||||||| Sbjct 688821 TCAGCCACACTGGGACTGAGACACGGCCCAGACTCCTACGGGAGGCAGCAGTGGGGAATT 688762 Query 292 TT 293 || Sbjct 688761 TT 688760 >seq1041 Length=564860 Score = 96.9 bits (106), Expect = 1e-17 Identities = 77/93 (83%), Gaps = 0/93 (0%) Strand=Plus/Plus Query 161 GCGTCTGATTAGCTAGTTGGTAAGGTAACGGCTTACCAAGGCGACGATCAGTAGCCGACC 220 ||||||||||||||||||||| |||||| |||||||||||||| |||||||||| | | Sbjct 504827 GCGTCTGATTAGCTAGTTGGTGAGGTAATAGCTTACCAAGGCGATGATCAGTAGCAGGTC 504886 Query 221 TGAGAGGGTGATCGGCCACATTGGAACTGAGAC 253 | | ||||| |||||| ||| |||||||| Sbjct 504887 TTTTCAGATGATCAGCCACACTGGGACTGAGAC 504919 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1497491289216