Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Musa_20acuminata_20subsp._20malaccensis_20[refseq_20GCF_5F000313855. 2_202012-11-14] 7,259 sequences; 472,231,289 total letters Query= AAMG01002183.1 Length=408 Score E Sequences producing significant alignments: (Bits) Value seq1035 181 3e-43 seq6 89.7 1e-15 >seq1035 Length=594915 Score = 181 bits (200), Expect = 3e-43 Identities = 246/340 (72%), Gaps = 10/340 (3%) Strand=Plus/Minus Query 2 ACTTGAGGAGGAAGCCCCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGGGCT 61 ||| ||||| ||||||||||| |||| |||||||||||||||||||||||| |||||| Sbjct 2031 ACTCGAGGAAGAAGCCCCGGCAAACTCCGTGCCAGCAGCCGCGGTAATACGGGGGGGGCA 1972 Query 62 AGCGTTATCCGGAATTACTGGGCGTAAAGGGTGCGTAGGTGGTTTCTTAAGTCAGAGGTG 121 || ||| | |||||| ||| ||||||||||| | || || | || | || Sbjct 1971 AGTGTTCTTCGGAATGACTAGGCGTAAAGGGCACTACGGCAGTGAATCGGGTTGCAAGTT 1912 Query 122 AAAGGCTATGGCTCAACCCCG-GGACTGCTTTTGAAAC---TGCAGGGCTAGAGTGCAGG 177 ||| | | | || || | ||| |||| | ||||| | || || ||||| Sbjct 1911 CAAGTC---GCCAAAAACCGGCGGAATGCTCTCGAAACCAATTCA---CTTGAGTGAGAC 1858 Query 178 AGGGGCAAGTGGAATTCCTAGTGTAGCGGTGAAATGCGTAGATATTAGGAGGAACACCAG 237 || || ||| ||| | |||||| ||| |||| ||||||| | | ||||| ||| Sbjct 1857 AGAGGAGAGTTTCATTTCGTGTGTAGGGGTTAAATCCGTAGATCTACGAAGGAAGGCCAA 1798 Query 238 TGGCGAAGGCGGCTTGCTGGACTGTAACTGACACTGAGGCTCGAAAGCGTGGGGAGCAAA 297 |||||||| ||| ||| |||||| |||||| ||||||| ||||||||||| Sbjct 1797 AAGCGAAGGCAGCTCTTTGGGTCCCTACTGACGCTGAGGTGCGAAAGCATGGGGAGCAAA 1738 Query 298 CAGGATTAGATACCCTGGTAGTCCACGCCGTAAACGATGA 337 | ||||||||||||| ||||||||| |||||||||||||| Sbjct 1737 CTGGATTAGATACCCAGGTAGTCCATGCCGTAAACGATGA 1698 >seq6 Length=34899179 Score = 89.7 bits (98), Expect = 1e-15 Identities = 114/157 (73%), Gaps = 0/157 (0%) Strand=Plus/Minus Query 77 TACTGGGCGTAAAGGGTGCGTAGGTGGTTTCTTAAGTCAGAGGTGAAAGGCTATGGCTCA 136 || ||||||||||| || |||||||| || | ||||| | || ||| | | |||||| Sbjct 11122116 TATTGGGCGTAAAGCGTCTGTAGGTGGCTTTTCAAGTCCGCCGTCAAATCCCAGGGCTCA 11122057 Query 137 ACCCCGGGACTGCTTTTGAAACTGCAGGGCTAGAGTGCAGGAGGGGCAAGTGGAATTCCT 196 |||| || || | |||||| | ||| |||| | | ||||||| |||||| | Sbjct 11122056 ACCCTGGACAGGCGGTGGAAACTACCAAGCTGGAGTACGGTAGGGGCAGAGGGAATTTCC 11121997 Query 197 AGTGTAGCGGTGAAATGCGTAGATATTAGGAGGAACA 233 ||| |||||||||||||||||| || | | ||||| Sbjct 11121996 GGTGGAGCGGTGAAATGCGTAGAGATCGGAAAGAACA 11121960 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1203112659712