Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Musa_20acuminata_20subsp._20malaccensis_20[refseq_20GCF_5F000313855. 2_202012-11-14] 7,259 sequences; 472,231,289 total letters Query= AAMG01002207.1 Length=564 Score E Sequences producing significant alignments: (Bits) Value seq5789 206 9e-51 seq1376 163 1e-37 seq3 86.0 2e-14 >seq5789 Length=6742 Score = 206 bits (228), Expect = 9e-51 Identities = 344/489 (70%), Gaps = 26/489 (5%) Strand=Plus/Plus Query 1 TCGACTTGTAAGTCTCGCAGTCAAGCTCCCTTGTGCACTTACACTCACCACCTGATTGCC 60 ||||| ||| ||||| |||||| || ||| | | |||| ||||| | |||| | | Sbjct 2812 TCGACCAGTAGGTCTCACAGTCAGGCAGGCTTATACCATTACGCTCACGAGCTGAAT--C 2869 Query 61 AACCAGGCTGAGGGAACCTTTGGGCGCCTCCGTTACATTTTGGGAGGGCAACCGCCCCAG 120 ||| | |||| ||||| | | |||||||||| ||| ||||| || ||||||||| Sbjct 2870 AAC--GCTTGAGCCTACCTTCGCACACCTCCGTTACTCTTTAGGAGG-CATCCGCCCCAG 2926 Query 121 TTAAACTACCCACCAGGCACTGTCCC-CAACCCAG--ATCATGGG--CCAAGGTTAGATA 175 |||||||||||| || |||||| | ||| | || || || | |||||||| | Sbjct 2927 AAAAACTACCCACCTCACAGTGTCCCGCCACCTACGAATGATCGGTGCTAAGGTTAGGCA 2986 Query 176 TCCACTACGGTCAGAGTGGTATTTCAACAACGACTCCACAACCACTAGCGTGGCCGCATC 235 ||| || | |||||||||||||| | | || | | ||| | || | Sbjct 2987 TCCTTTAACGAAAGAGTGGTATTTCAGGATTGG-TCG--------TTGTGTGTCACCACC 3037 Query 236 ATAGTCTCCCACCTATCCTACACAAACCGCACCGAATGCCAATACCAAGCTATAGTGAAG 295 ||||||||| |||||||| | | || || | | |||||||||| ||| Sbjct 3038 ------TCCCACCTAGCCTACACATTCGATCAAGGTTGTCACTGCGAAGCTATAGTAAAG 3091 Query 296 GTCC-CGGGGTCTTTTCGTCCTGCCGCGCGAAACGAGCATCTTTACTCGTACTGCAATTT 354 || | ||||||||| |||| |||| | | ||||||| || | | | |||| Sbjct 3092 GTGCACGGGGTCTTACCGTCTAGCCGTTGGTACTCCGCATCTTCACGGAGAATTCCATTT 3151 Query 355 CACCGGGCCTGTGGTTGAGACAGCAGGGGAGTCGTTACGCCATTCGTGCAGGTCGGAACT 414 ||||||| | || |||||||| ||| ||||||||| |||||||||||||||| ||| Sbjct 3152 CACCGGGTCCATGTCGGAGACAGCGGGGCAGTCGTTACACCATTCGTGCAGGTCGCTACT 3211 Query 415 TACCCGACAAGGAATTTCGCTACCTTAGGATGGTTATAGTTACCACCGCCGTTTACTGGG 474 || |||||||||||||||||||||||||| |||| |||||| ||||||||||| || Sbjct 3212 TATGCGACAAGGAATTTCGCTACCTTAGGACAGTTAGAGTTACTGCCGCCGTTTACCAGG 3271 Query 475 GCTTCAATT 483 ||||| ||| Sbjct 3272 GCTTCCATT 3280 >seq1376 Length=180402 Score = 163 bits (180), Expect = 1e-37 Identities = 336/488 (69%), Gaps = 15/488 (3%) Strand=Plus/Plus Query 1 TCGACTTGTAAGTCTCGCAGTCAAGCTCCCTTGTGCACTTACACTCACCACCTGATTGCC 60 ||||| || |||| |||||||||||||||| ||| || ||||| | || || Sbjct 83700 TCGACGGGTGGGTCTTGCAGTCAAGCTCCCTTCTGCCTTTGCACTCGAGGGCCAATCTCC 83759 Query 61 AACCAGGCTGAGGGAACCTTTGGGCGCCTCCGTTACATTTTGGGAGGGCAACCGCCCCAG 120 || | | |||| |||||||| |||||||||||| |||||||||| | || |||||| Sbjct 83760 GTCCGGCCCGAGGAAACCTTTGCACGCCTCCGTTACCTTTTGGGAGGCCTAC-GCCCCAT 83818 Query 121 TTAAACTACCCACCAGGCACTGTCCCCAACCC---AGATCATGGGCCAAGGTTAGATATC 177 ||||| | ||| | |||||||| || || || || |||||||| | || Sbjct 83819 AGAAACTGTCTACCTGAGACTGTCCCTTGGCCCGTAGGTCCTGAAACAAGGTTATAATTC 83878 Query 178 CACTACGGTCAGAGTGGTATTTCAACAACGACTCCACAACC-ACT-AGCGTGGCCGCATC 235 | | | ||||||||| ||| | | ||| || || | | |||| || Sbjct 83879 TAGCTCTTCCGGAGTGGTATCTCATTGATGGCTCGGGCCCCGACGGAAGGAGGCCT--TC 83936 Query 236 ATAGTCTCCCACCTA--TCCTACACAAACCGCACCGAATGCCAATACCAAGCTATAGTGA 293 | | || ||||||| | | || || || | || |||||| ||| | || || | Sbjct 83937 TTTGCCTTCCACCTAAGTTGTGCAAGAAAGGCCC--AAAGCCAATCCCAGGGAATGGTAA 83994 Query 294 AGGTCCCG-GGGTCTTTTCGTCCTGCCGCGCGAAACGAGCATCTTTACTCGTACTGCAAT 352 || | ||| ||||| ||| | ||| | | ||||||| || | | || Sbjct 83995 AGCTTTATAGGGCCTTTTTGTCTAGGTGCGGGTAGTCCGCATCTTCACAGACATGTCTAT 84054 Query 353 TTCACCGGGCCTGTGGTTGAGACAGCAGGGGAG-TCGTTACGCCATTCGTGCAGGTCGGA 411 ||||||| |||| | ||||||| | || |||||||||| ||||||| ||||||| Sbjct 84055 TTCACCGAGCCTCTCTCCGAGACAGT-GCCCAGATCGTTACGCCTTTCGTGCGGGTCGGA 84113 Query 412 ACTTACCCGACAAGGAATTTCGCTACCTTAGGATGGTTATAGTTACCACCGCCGTTTACT 471 ||||||||||||||||||||||||||||||||| ||||||||||| |||||||| || Sbjct 84114 ACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTATAGTTACGGCCGCCGTTCACC 84173 Query 472 GGGGCTTC 479 |||||||| Sbjct 84174 GGGGCTTC 84181 >seq3 Length=30470407 Score = 86.0 bits (94), Expect = 2e-14 Identities = 79/100 (79%), Gaps = 0/100 (0%) Strand=Plus/Plus Query 386 TCGTTACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGAT 445 |||||||| | || ||| ||||| |||||||| |||||||||||||||||||||||| Sbjct 20935048 TCGTTACGTCTTTTGTGTAGGTCAAAACTTACCAAACAAGGAATTTCGCTACCTTAGGAC 20935107 Query 446 GGTTATAGTTACCACCGCCGTTTACTGGGGCTTCAATTAC 485 ||||| |||| | ||| || | |||||||| || || Sbjct 20935108 CATTATAATTACGATCGCTATTCATCGGGGCTTCGATCAC 20935147 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1702276422784