Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Musa_20acuminata_20subsp._20malaccensis_20[refseq_20GCF_5F000313855.
2_202012-11-14] 7,259 sequences; 472,231,289 total letters
Query= AAMG01002207.1
Length=564
Score E
Sequences producing significant alignments: (Bits) Value
seq5789 206 9e-51
seq1376 163 1e-37
seq3 86.0 2e-14
>seq5789
Length=6742
Score = 206 bits (228), Expect = 9e-51
Identities = 344/489 (70%), Gaps = 26/489 (5%)
Strand=Plus/Plus
Query 1 TCGACTTGTAAGTCTCGCAGTCAAGCTCCCTTGTGCACTTACACTCACCACCTGATTGCC 60
||||| ||| ||||| |||||| || ||| | | |||| ||||| | |||| | |
Sbjct 2812 TCGACCAGTAGGTCTCACAGTCAGGCAGGCTTATACCATTACGCTCACGAGCTGAAT--C 2869
Query 61 AACCAGGCTGAGGGAACCTTTGGGCGCCTCCGTTACATTTTGGGAGGGCAACCGCCCCAG 120
||| | |||| ||||| | | |||||||||| ||| ||||| || |||||||||
Sbjct 2870 AAC--GCTTGAGCCTACCTTCGCACACCTCCGTTACTCTTTAGGAGG-CATCCGCCCCAG 2926
Query 121 TTAAACTACCCACCAGGCACTGTCCC-CAACCCAG--ATCATGGG--CCAAGGTTAGATA 175
|||||||||||| || |||||| | ||| | || || || | |||||||| |
Sbjct 2927 AAAAACTACCCACCTCACAGTGTCCCGCCACCTACGAATGATCGGTGCTAAGGTTAGGCA 2986
Query 176 TCCACTACGGTCAGAGTGGTATTTCAACAACGACTCCACAACCACTAGCGTGGCCGCATC 235
||| || | |||||||||||||| | | || | | ||| | || |
Sbjct 2987 TCCTTTAACGAAAGAGTGGTATTTCAGGATTGG-TCG--------TTGTGTGTCACCACC 3037
Query 236 ATAGTCTCCCACCTATCCTACACAAACCGCACCGAATGCCAATACCAAGCTATAGTGAAG 295
||||||||| |||||||| | | || || | | |||||||||| |||
Sbjct 3038 ------TCCCACCTAGCCTACACATTCGATCAAGGTTGTCACTGCGAAGCTATAGTAAAG 3091
Query 296 GTCC-CGGGGTCTTTTCGTCCTGCCGCGCGAAACGAGCATCTTTACTCGTACTGCAATTT 354
|| | ||||||||| |||| |||| | | ||||||| || | | | ||||
Sbjct 3092 GTGCACGGGGTCTTACCGTCTAGCCGTTGGTACTCCGCATCTTCACGGAGAATTCCATTT 3151
Query 355 CACCGGGCCTGTGGTTGAGACAGCAGGGGAGTCGTTACGCCATTCGTGCAGGTCGGAACT 414
||||||| | || |||||||| ||| ||||||||| |||||||||||||||| |||
Sbjct 3152 CACCGGGTCCATGTCGGAGACAGCGGGGCAGTCGTTACACCATTCGTGCAGGTCGCTACT 3211
Query 415 TACCCGACAAGGAATTTCGCTACCTTAGGATGGTTATAGTTACCACCGCCGTTTACTGGG 474
|| |||||||||||||||||||||||||| |||| |||||| ||||||||||| ||
Sbjct 3212 TATGCGACAAGGAATTTCGCTACCTTAGGACAGTTAGAGTTACTGCCGCCGTTTACCAGG 3271
Query 475 GCTTCAATT 483
||||| |||
Sbjct 3272 GCTTCCATT 3280
>seq1376
Length=180402
Score = 163 bits (180), Expect = 1e-37
Identities = 336/488 (69%), Gaps = 15/488 (3%)
Strand=Plus/Plus
Query 1 TCGACTTGTAAGTCTCGCAGTCAAGCTCCCTTGTGCACTTACACTCACCACCTGATTGCC 60
||||| || |||| |||||||||||||||| ||| || ||||| | || ||
Sbjct 83700 TCGACGGGTGGGTCTTGCAGTCAAGCTCCCTTCTGCCTTTGCACTCGAGGGCCAATCTCC 83759
Query 61 AACCAGGCTGAGGGAACCTTTGGGCGCCTCCGTTACATTTTGGGAGGGCAACCGCCCCAG 120
|| | | |||| |||||||| |||||||||||| |||||||||| | || ||||||
Sbjct 83760 GTCCGGCCCGAGGAAACCTTTGCACGCCTCCGTTACCTTTTGGGAGGCCTAC-GCCCCAT 83818
Query 121 TTAAACTACCCACCAGGCACTGTCCCCAACCC---AGATCATGGGCCAAGGTTAGATATC 177
||||| | ||| | |||||||| || || || || |||||||| | ||
Sbjct 83819 AGAAACTGTCTACCTGAGACTGTCCCTTGGCCCGTAGGTCCTGAAACAAGGTTATAATTC 83878
Query 178 CACTACGGTCAGAGTGGTATTTCAACAACGACTCCACAACC-ACT-AGCGTGGCCGCATC 235
| | | ||||||||| ||| | | ||| || || | | |||| ||
Sbjct 83879 TAGCTCTTCCGGAGTGGTATCTCATTGATGGCTCGGGCCCCGACGGAAGGAGGCCT--TC 83936
Query 236 ATAGTCTCCCACCTA--TCCTACACAAACCGCACCGAATGCCAATACCAAGCTATAGTGA 293
| | || ||||||| | | || || || | || |||||| ||| | || || |
Sbjct 83937 TTTGCCTTCCACCTAAGTTGTGCAAGAAAGGCCC--AAAGCCAATCCCAGGGAATGGTAA 83994
Query 294 AGGTCCCG-GGGTCTTTTCGTCCTGCCGCGCGAAACGAGCATCTTTACTCGTACTGCAAT 352
|| | ||| ||||| ||| | ||| | | ||||||| || | | ||
Sbjct 83995 AGCTTTATAGGGCCTTTTTGTCTAGGTGCGGGTAGTCCGCATCTTCACAGACATGTCTAT 84054
Query 353 TTCACCGGGCCTGTGGTTGAGACAGCAGGGGAG-TCGTTACGCCATTCGTGCAGGTCGGA 411
||||||| |||| | ||||||| | || |||||||||| ||||||| |||||||
Sbjct 84055 TTCACCGAGCCTCTCTCCGAGACAGT-GCCCAGATCGTTACGCCTTTCGTGCGGGTCGGA 84113
Query 412 ACTTACCCGACAAGGAATTTCGCTACCTTAGGATGGTTATAGTTACCACCGCCGTTTACT 471
||||||||||||||||||||||||||||||||| ||||||||||| |||||||| ||
Sbjct 84114 ACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTATAGTTACGGCCGCCGTTCACC 84173
Query 472 GGGGCTTC 479
||||||||
Sbjct 84174 GGGGCTTC 84181
>seq3
Length=30470407
Score = 86.0 bits (94), Expect = 2e-14
Identities = 79/100 (79%), Gaps = 0/100 (0%)
Strand=Plus/Plus
Query 386 TCGTTACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGAT 445
|||||||| | || ||| ||||| |||||||| ||||||||||||||||||||||||
Sbjct 20935048 TCGTTACGTCTTTTGTGTAGGTCAAAACTTACCAAACAAGGAATTTCGCTACCTTAGGAC 20935107
Query 446 GGTTATAGTTACCACCGCCGTTTACTGGGGCTTCAATTAC 485
||||| |||| | ||| || | |||||||| || ||
Sbjct 20935108 CATTATAATTACGATCGCTATTCATCGGGGCTTCGATCAC 20935147
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1702276422784
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |