Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Musa_20acuminata_20subsp._20malaccensis_20[refseq_20GCF_5F000313855. 2_202012-11-14] 7,259 sequences; 472,231,289 total letters Query= AAMG01002236.1 Length=287 Score E Sequences producing significant alignments: (Bits) Value seq4666 100 5e-19 seq4540 100 5e-19 seq3867 95.1 2e-17 seq191 95.1 2e-17 seq2298 91.5 2e-16 seq1293 91.5 2e-16 seq11 86.0 1e-14 seq2989 82.4 1e-13 >seq4666 Length=16983 Score = 100 bits (110), Expect = 5e-19 Identities = 92/114 (81%), Gaps = 2/114 (2%) Strand=Plus/Plus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 ||||||||||||||| || |||| | ||||||| | ||| || ||| || |||| Sbjct 16203 GTACGAGAGGAACCGTTGA-TTCACAC-AATTGGTCATCGCGCTTGGTTGAAAAGCCAGT 16260 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCC 114 | |||||||||||| | || |||||||| |||||||||||||||||||||||| Sbjct 16261 GGCGCGAAGCTACCGTGTGTCGGATTATGACTGAACGCCTCTAAGTCAGAATCC 16314 >seq4540 Length=2785 Score = 100 bits (110), Expect = 5e-19 Identities = 92/114 (81%), Gaps = 2/114 (2%) Strand=Plus/Minus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 ||||||||||||||| || |||| | ||||||| | ||| || ||| || |||| Sbjct 1340 GTACGAGAGGAACCGTTGA-TTCACAC-AATTGGTCATCGCGCTTGGTTGAAAAGCCAGT 1283 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCC 114 | |||||||||||| | || |||||||| |||||||||||||||||||||||| Sbjct 1282 GGCGCGAAGCTACCGTGTGTCGGATTATGACTGAACGCCTCTAAGTCAGAATCC 1229 >seq3867 Length=26241 Score = 95.1 bits (104), Expect = 2e-17 Identities = 91/114 (80%), Gaps = 2/114 (2%) Strand=Plus/Minus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 ||| ||||||||||| || |||| | ||||||| | ||| || ||| || |||| Sbjct 7472 GTATGAGAGGAACCGTTGA-TTCACAC-AATTGGTCATCGCGCTTGGTTGAAAAGCCAGT 7415 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCC 114 | |||||||||||| | || |||||||| |||||||||||||||||||||||| Sbjct 7414 GGCGCGAAGCTACCGTGTGTCGGATTATGACTGAACGCCTCTAAGTCAGAATCC 7361 >seq191 Length=3995 Score = 95.1 bits (104), Expect = 2e-17 Identities = 91/114 (80%), Gaps = 2/114 (2%) Strand=Plus/Minus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 ||||||||||||||| || |||| | ||||||| | ||| || ||| || || | Sbjct 3939 GTACGAGAGGAACCGTTGA-TTCACAC-AATTGGTCATCGCGCTTGGTTGAAAAGCCAAT 3882 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCC 114 | |||||||||||| | || |||||||| |||||||||||||||||||||||| Sbjct 3881 GGCGCGAAGCTACCGTTTGTCGGATTATGACTGAACGCCTCTAAGTCAGAATCC 3828 >seq2298 Length=78726 Score = 91.5 bits (100), Expect = 2e-16 Identities = 90/114 (79%), Gaps = 2/114 (2%) Strand=Plus/Minus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 ||||||||||||||| || |||| | ||||||| | ||| || ||| || ||| Sbjct 37285 GTACGAGAGGAACCGTTGA-TTCACAC-AATTGGTCATCGCGCTTGGTTGAAAAGCTAGT 37228 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCC 114 | ||||||||||| | || |||||||| |||||||||||||||||||||||| Sbjct 37227 GGTGCGAAGCTACCGTGTGTCGGATTATGACTGAACGCCTCTAAGTCAGAATCC 37174 >seq1293 Length=347032 Score = 91.5 bits (100), Expect = 2e-16 Identities = 89/114 (78%), Gaps = 2/114 (2%) Strand=Plus/Plus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 ||||||||||||||| || || | |||||| | ||| || ||| || |||| Sbjct 299104 GTACGAGAGGAACCGTTGA--TCCACACAATTGGCCATCGCGCTTGGTTGAAAAGCCAGT 299161 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCC 114 | || ||||||||||| || | ||||||| |||||||||||||||||||||||| Sbjct 299162 GGCGTGAAGCTACCATGTGTTAGATTATGACTGAACGCCTCTAAGTCAGAATCC 299215 >seq11 Length=25514024 Score = 86.0 bits (94), Expect = 1e-14 Identities = 55/60 (92%), Gaps = 0/60 (0%) Strand=Plus/Minus Query 54 AGGCAGTGCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATC 113 || ||||| |||||||||||||| || ||||||||| ||||||||||||||||||||||| Sbjct 18220668 AGCCAGTGGCGCGAAGCTACCATGTGTTGGATTATGACTGAACGCCTCTAAGTCAGAATC 18220609 >seq2989 Length=38965 Score = 82.4 bits (90), Expect = 1e-13 Identities = 84/107 (79%), Gaps = 2/107 (2%) Strand=Plus/Plus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 ||||||||| ||||| || |||| | ||||||| | ||| || ||| || |||| Sbjct 14817 GTACGAGAGCAACCGTTGA-TTCACAC-AATTGGTCATCGCGCTTGGTTGAAAAGCCAGT 14874 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTC 107 | |||||||||||| | || |||||||| ||||||||||||||||| Sbjct 14875 GGCGCGAAGCTACCGTGTGTCGGATTATGACTGAACGCCTCTAAGTC 14921 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 819142392576