Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Musa_20acuminata_20subsp._20malaccensis_20[refseq_20GCF_5F000313855.
2_202012-11-14] 7,259 sequences; 472,231,289 total letters
Query= AAMG01002236.1
Length=287
Score E
Sequences producing significant alignments: (Bits) Value
seq4666 100 5e-19
seq4540 100 5e-19
seq3867 95.1 2e-17
seq191 95.1 2e-17
seq2298 91.5 2e-16
seq1293 91.5 2e-16
seq11 86.0 1e-14
seq2989 82.4 1e-13
>seq4666
Length=16983
Score = 100 bits (110), Expect = 5e-19
Identities = 92/114 (81%), Gaps = 2/114 (2%)
Strand=Plus/Plus
Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60
||||||||||||||| || |||| | ||||||| | ||| || ||| || ||||
Sbjct 16203 GTACGAGAGGAACCGTTGA-TTCACAC-AATTGGTCATCGCGCTTGGTTGAAAAGCCAGT 16260
Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCC 114
| |||||||||||| | || |||||||| ||||||||||||||||||||||||
Sbjct 16261 GGCGCGAAGCTACCGTGTGTCGGATTATGACTGAACGCCTCTAAGTCAGAATCC 16314
>seq4540
Length=2785
Score = 100 bits (110), Expect = 5e-19
Identities = 92/114 (81%), Gaps = 2/114 (2%)
Strand=Plus/Minus
Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60
||||||||||||||| || |||| | ||||||| | ||| || ||| || ||||
Sbjct 1340 GTACGAGAGGAACCGTTGA-TTCACAC-AATTGGTCATCGCGCTTGGTTGAAAAGCCAGT 1283
Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCC 114
| |||||||||||| | || |||||||| ||||||||||||||||||||||||
Sbjct 1282 GGCGCGAAGCTACCGTGTGTCGGATTATGACTGAACGCCTCTAAGTCAGAATCC 1229
>seq3867
Length=26241
Score = 95.1 bits (104), Expect = 2e-17
Identities = 91/114 (80%), Gaps = 2/114 (2%)
Strand=Plus/Minus
Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60
||| ||||||||||| || |||| | ||||||| | ||| || ||| || ||||
Sbjct 7472 GTATGAGAGGAACCGTTGA-TTCACAC-AATTGGTCATCGCGCTTGGTTGAAAAGCCAGT 7415
Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCC 114
| |||||||||||| | || |||||||| ||||||||||||||||||||||||
Sbjct 7414 GGCGCGAAGCTACCGTGTGTCGGATTATGACTGAACGCCTCTAAGTCAGAATCC 7361
>seq191
Length=3995
Score = 95.1 bits (104), Expect = 2e-17
Identities = 91/114 (80%), Gaps = 2/114 (2%)
Strand=Plus/Minus
Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60
||||||||||||||| || |||| | ||||||| | ||| || ||| || || |
Sbjct 3939 GTACGAGAGGAACCGTTGA-TTCACAC-AATTGGTCATCGCGCTTGGTTGAAAAGCCAAT 3882
Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCC 114
| |||||||||||| | || |||||||| ||||||||||||||||||||||||
Sbjct 3881 GGCGCGAAGCTACCGTTTGTCGGATTATGACTGAACGCCTCTAAGTCAGAATCC 3828
>seq2298
Length=78726
Score = 91.5 bits (100), Expect = 2e-16
Identities = 90/114 (79%), Gaps = 2/114 (2%)
Strand=Plus/Minus
Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60
||||||||||||||| || |||| | ||||||| | ||| || ||| || |||
Sbjct 37285 GTACGAGAGGAACCGTTGA-TTCACAC-AATTGGTCATCGCGCTTGGTTGAAAAGCTAGT 37228
Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCC 114
| ||||||||||| | || |||||||| ||||||||||||||||||||||||
Sbjct 37227 GGTGCGAAGCTACCGTGTGTCGGATTATGACTGAACGCCTCTAAGTCAGAATCC 37174
>seq1293
Length=347032
Score = 91.5 bits (100), Expect = 2e-16
Identities = 89/114 (78%), Gaps = 2/114 (2%)
Strand=Plus/Plus
Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60
||||||||||||||| || || | |||||| | ||| || ||| || ||||
Sbjct 299104 GTACGAGAGGAACCGTTGA--TCCACACAATTGGCCATCGCGCTTGGTTGAAAAGCCAGT 299161
Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCC 114
| || ||||||||||| || | ||||||| ||||||||||||||||||||||||
Sbjct 299162 GGCGTGAAGCTACCATGTGTTAGATTATGACTGAACGCCTCTAAGTCAGAATCC 299215
>seq11
Length=25514024
Score = 86.0 bits (94), Expect = 1e-14
Identities = 55/60 (92%), Gaps = 0/60 (0%)
Strand=Plus/Minus
Query 54 AGGCAGTGCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATC 113
|| ||||| |||||||||||||| || ||||||||| |||||||||||||||||||||||
Sbjct 18220668 AGCCAGTGGCGCGAAGCTACCATGTGTTGGATTATGACTGAACGCCTCTAAGTCAGAATC 18220609
>seq2989
Length=38965
Score = 82.4 bits (90), Expect = 1e-13
Identities = 84/107 (79%), Gaps = 2/107 (2%)
Strand=Plus/Plus
Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60
||||||||| ||||| || |||| | ||||||| | ||| || ||| || ||||
Sbjct 14817 GTACGAGAGCAACCGTTGA-TTCACAC-AATTGGTCATCGCGCTTGGTTGAAAAGCCAGT 14874
Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTC 107
| |||||||||||| | || |||||||| |||||||||||||||||
Sbjct 14875 GGCGCGAAGCTACCGTGTGTCGGATTATGACTGAACGCCTCTAAGTC 14921
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 819142392576
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |