Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Musa_20acuminata_20subsp._20malaccensis_20[refseq_20GCF_5F000313855. 2_202012-11-14] 7,259 sequences; 472,231,289 total letters Query= NC_010671.1 Length=124279 Score E Sequences producing significant alignments: (Bits) Value seq6 168 5e-37 seq9 163 2e-35 >seq6 Length=34899179 Score = 168 bits (186), Expect = 5e-37 Identities = 548/840 (65%), Gaps = 17/840 (2%) Strand=Plus/Plus Query 61099 TACAAAAAGGCGGAAGCTTCCTTCTGGACGGTGGAGGAGGTCGATTTGTCCAAAGACATG 61158 ||||||||||| | || ||||||||||||| ||||||||| || |||||| | || | Sbjct 15336479 TACAAAAAGGCCGTGGCCTCCTTCTGGACGGCGGAGGAGGTGGACTTGTCCCAGGATCTC 15336538 Query 61159 AATGACTGGGAG---CGTTTATCGAGCGGTGAACAACATTTCATTAAACATGTGTTGGCG 61215 ||||| || ||| | || || || || || ||||| ||||| | || Sbjct 15336539 TCCCACTGGCAGGATCGTCTGTCCGCCGACGAGCACCACTTCATCTCCCATGTCCTCGCC 15336598 Query 61216 TTCTTTGCCGCTTCGGACGGTATCGTCAATGAGAATTTATTGGAACGTTTCGCGCAGGAG 61275 || |||||||| || ||||| |||||| ||||| | || || ||| || || Sbjct 15336599 TTTTTTGCCGCCTCCGACGGCATCGTCCTCGAGAACCTGGCGGCCCGGTTCATGCGCGAC 15336658 Query 61276 GTGCAAGTGTCGGAGGCGCGTTGTTTCTACGGCTTCCAGATTGCCATGGAGAATGTCCAC 61335 || || | | ||||| || ||||||||||||||||| || || ||||| ||||| Sbjct 15336659 GTCCAGCTTCCTGAGGCCCGCGCCTTCTACGGCTTCCAGATCGCTATCGAGAACATCCAC 15336718 Query 61336 TCGGAGATGTACAGTGTTCTCATCGATACGTACATCAGGGA-GCGGGCGGAACGTGAACG 61394 || |||||||| | | ||| |||| || ||||||| ||| | |||| | || || Sbjct 15336719 TCTGAGATGTATTCTCTCCTCCTCGACACCTACATCAAGGACCCCGGCGAGAAGT-CTCG 15336777 Query 61395 ATTGTTCAATGCCATCGAGACGATACCGGCGGTGAAGCGGAAAGCGGATTGGGCCTTCAA 61454 | ||| ||||||| || || | || | || || || || || ||||| | Sbjct 15336778 CCTCTTCCATGCCATTGACACCGTCCCTCCTGTCGCCCGCAAGGCCGAGTGGGCGCTACG 15336837 Query 61455 TTGGATCACCAGTACAACGGCTACATTTGGTGAACGATTGCTGGCATTTGCGGTGGTCGA 61514 ||||| | | | | | || |||| | || || | | || || || ||||| Sbjct 15336838 CTGGAT--CGAATCCTCTGTCT-CATTCGCCGAGCGCCTCGTTGCCTTCGCCTGCGTCGA 15336894 Query 61515 GGGTGTATTTTTCAGTGGATCGTTTGCCGCAATCTTTTGGTTGAAGAAACGTGGACTTAT 61574 ||| || || ||| || || || ||| ||||| ||| | ||||| || || || || Sbjct 15336895 GGGAGTCTTCTTCTCCGGCTCCTTCTGCGCCATCTTCTGGCTCAAGAAGCGAGGCCTCAT 15336954 Query 61575 GCCCGGTCTGACCTTCAGCAATGAGTTGATATCACGCGACGAGGGCATGCATTGTGATTT 61634 ||| ||||| |||||| || ||| | || || || ||||||||| | || || || || Sbjct 15336955 GCCGGGTCTCACCTTCTCAAACGAGCTCATCTCCCGTGACGAGGGCCTCCACTGCGACTT 15337014 Query 61635 TGCTGTTTTGCTATTCAAACGCTATCTGGTGAATCGTCCGTCGGAGGAGCGTGTGGGTGA 61694 || | || || | | ||| || | || ||| | ||||| |||| Sbjct 15337015 CGC---CTGCCTCCTCTACAGTCTTCTTCGCAACAAGCTCTCCGAGTACCGTGTCCGTGA 15337071 Query 61695 GATTGTTCGTGAGGCGGTAACTATCGAACAGGAATT--TCTGACTGACGCTTTGCCCGTC 61752 || ||| || || || ||||| | |||||| |||| | || |||| ||| Sbjct 15337072 AATCGTTGCCGATGCCGTTGACATCGAGCGGGAATTCGTCTG--CAATGCCCTGCCGGTC 15337129 Query 61753 TCACTCATCGGCATGAATTGTGGACTAATGTCGCAGTATATTGAATTTGTTGCCGACCGT 61812 | || |||| |||||| | | || ||| |||||||| || || || |||||||| Sbjct 15337130 GCCCTTGTCGGGATGAATGGCGACCTCATGAGTCAGTATATCGAGTTCGTGGCCGACCGC 15337189 Query 61813 CTG-TTGGTCGATTTGGGTATGAAGCGGATCTATAATACGAAAAACCCATTTGATTTCAT 61871 ||| |||| | || || ||| | | || || ||||| || || | || Sbjct 15337190 CTGCTTGGAGCGCTAGGTTACGAA-AAGTTGTACGGGGCGGCCAACCCCTTCGACTGGAT 15337248 Query 61872 GGACATGATTTCGCTGGATGGCAAGACGAATTTTTTCGAGAAACGTGTAGGCGACTATCA 61931 ||| | || |||||| | || ||||| || || |||||||| | || |||||||| || Sbjct 15337249 GGAGCTCATCTCGCTGCAGGGGAAGACAAACTTCTTCGAGAAGAGGGTCGGCGACTACCA 15337308 Score = 156 bits (172), Expect = 3e-33 Identities = 365/547 (67%), Gaps = 14/547 (3%) Strand=Plus/Plus Query 61099 TACAAAAAGGCGGAAGCTTCCTTCTGGACGGTGGAGGAGGTCGATTTGTCCAAAGACATG 61158 ||||| ||||||| || ||||||||||| | |||||||| || |||| ||| | Sbjct 4328197 TACAAGAAGGCGGTGGCCTCCTTCTGGACCGCAGAGGAGGTGGACCTGTCGCCGGACCTC 4328256 Query 61159 AATGACTGGGAGC---GTTTATCGAGCGGTGAACAACATTTCATTAAACATGTGTTGGCG 61215 | ||| ||| | | || || || | || ||| | || || | || Sbjct 4328257 TCCCAGTGGCAGCACCGCCTCTCCGACGACGAGCGCCACTTCGTCTCCCACGTCCTCGCC 4328316 Query 61216 TTCTTTGCCGCTTCGGACGGTATCGTCAATGAGAATTTATTGGAACGTTTCGCGCAGGAG 61275 || |||||||| || ||||| |||||| ||||| | | || ||| || || Sbjct 4328317 TTTTTTGCCGCCTCCGACGGCATCGTCCTCGAGAACCTGGCCGCCCGCTTCATGCGCGAC 4328376 Query 61276 GTGCAAGTGTCGGAGGCGCGTTGTTTCTACGGCTTCCAGATTGCCATGGAGAATGTCCAC 61335 || ||| | | ||||| || |||||||| ||||||||||| || ||||| ||||| Sbjct 4328377 GTCCAACTCCCCGAGGCCCGCGCCTTCTACGGTTTCCAGATTGCAATCGAGAACATCCAC 4328436 Query 61336 TCGGAGATGTACAGTGTTCTCATCGATACGTACATCAGGGAGCGGGCGGAACGTGAA--- 61392 || ||||||||| |||| ||||||||||||||| ||| | | ||||||| Sbjct 4328437 TCCGAGATGTACTCCCTTCTACTCGATACGTACATCAAGGACCCCG----ACGTGAAGTT 4328492 Query 61393 -CGATTGTTCAATGCCATCGAGACGATACCGGCGGTGAAGCGGAAAGCGGATTGGGCCTT 61451 || | ||| | || ||||| || | || || || ||||| || || ||||| | Sbjct 4328493 TCGCCTCTTCCACGCGATCGACACCGTCCCTGCCGTCGCCCGGAAGGCCGAATGGGCTCT 4328552 Query 61452 CAATTGGATCACCAGTACAACGGCTACATTTGGTGAACGATTGCTGGCATTTGCGGTGGT 61511 | | ||||| ||| ||||| | || | || ||| | | || || || || Sbjct 4328553 CCAATGGAT--TGAGTCTTCCGGCT-CCTTCGCCGAGCGACTCGTCGCCTTCGCCTGCGT 4328609 Query 61512 CGAGGGTGTATTTTTCAGTGGATCGTTTGCCGCAATCTTTTGGTTGAAGAAACGTGGACT 61571 |||||| | |||||| || || || ||| ||||| ||| | ||||| || || || Sbjct 4328610 CGAGGGCATCTTTTTCTCCGGCTCCTTCTGCGCCATCTTCTGGCTCAAGAAGCGCGGCCT 4328669 Query 61572 TATGCCCGGTCTGACCTTCAGCAATGAGTTGATATCACGCGACGAGGGCATGCATTGTGA 61631 ||||||||||| |||||| ||| ||| | || || || ||||||||| | || || || Sbjct 4328670 CATGCCCGGTCTCACCTTCTCCAACGAGCTCATCTCCCGTGACGAGGGCCTTCACTGCGA 4328729 Query 61632 TTTTGCT 61638 |||||| Sbjct 4328730 CTTTGCT 4328736 Score = 91.5 bits (100), Expect = 1e-13 Identities = 86/110 (78%), Gaps = 0/110 (0%) Strand=Plus/Plus Query 65152 CCAAGCATAGAAATGCATCGATGATAATTTTGCATAATTCGGCTCGGCCACATGCATATT 65211 |||||||||||| |||| ||||| || || || |||| |||| | ||| || ||||| Sbjct 13937880 CCAAGCATAGAAGTGCAGCGATGTTAGCTTCCCAAAATTTGGCTGGTCCATGTGGATATT 13937939 Query 65212 CAACGACTGACTCTGATCGATGTAACGACCACGATCTGCAGCCATGTCAA 65261 | |||||||||||| ||||||| |||||||| |||||||||||| Sbjct 13937940 AAGGCTCTGACTCTGATCTATGTAACACCCACGATCAACAGCCATGTCAA 13937989 >seq9 Length=34148863 Score = 163 bits (180), Expect = 2e-35 Identities = 473/724 (65%), Gaps = 17/724 (2%) Strand=Plus/Plus Query 61099 TACAAAAAGGCGGAAGCTTCCTTCTGGACGGTGGAGGAGGTCGATTTGTCCAAAGACATG 61158 ||||| ||||||| || ||||||||||||| ||||||||| ||| |||| ||| | Sbjct 1096451 TACAAGAAGGCGGTGGCCTCCTTCTGGACGGCGGAGGAGGTGGATCTGTCTCCGGACGTA 1096510 Query 61159 AATGACTGGGAGCGTT---TATCGAGCGGTGAACAACATTTCATTAAACATGTGTTGGCG 61215 | ||| ||| | | || || || | || ||||| || || | || Sbjct 1096511 CCCCATTGGCAGCATCGCCTCTCCCACGACGAGCGCCACTTCATCTCCCACGTTCTTGCC 1096570 Query 61216 TTCTTTGCCGCTTCGGACGGTATCGTCAATGAGAATTTATTGGAACGTTTCGCGCAGGAG 61275 ||||| ||||| || ||||| |||||| |||||| | | || ||| || || Sbjct 1096571 TTCTTCGCCGCCTCAGACGGCATCGTCCTTGAGAACCTCGCCGCCCGGTTCATGCGCGAC 1096630 Query 61276 GTGCAAGTGTCGGAGGCGCGTTGTTTCTACGGCTTCCAGATTGCCATGGAGAATGTCCAC 61335 || || | | ||||| || ||||||||||||||||| ||||| ||||| ||||| Sbjct 1096631 GTCCAGCTCCCCGAGGCTCGCGCCTTCTACGGCTTCCAGATCGCCATCGAGAACATCCAC 1096690 Query 61336 TCGGAGATGTACAGTGTTCTCATCGATACGTACATCAGGGAGCGGGCGGAACGTGAA--- 61392 || ||||||||| | ||| |||| || ||||||| ||| | | ||| ||| Sbjct 1096691 TCTGAGATGTACTCCCTCCTCCTCGACACCTACATCAAGGACCCTG----ACGAGAAGAC 1096746 Query 61393 -CGATTGTTCAATGCCATCGAGACGATACCGGCGGTGAAGCGGAAAGCGGATTGGGCCTT 61451 || | ||| |||||||||||| | || | || || || || || |||||| | Sbjct 1096747 CCGTCTCTTCCGAGCCATCGAGACGGTCCCCTCTGTCGCCCGAAAGGCCGACTGGGCCCT 1096806 Query 61452 CAATTGGATCACCAGTACAACGGCTACATTTGGTGAACGATTGCTGGCATTTGCGGTGGT 61511 ||||| | | ||||| | |||| || ||| | | || || || || Sbjct 1096807 GCGCTGGAT--TGAATCTTCCGGCT-CGTTTGCCGAGCGAATTGTCGCCTTCGCCTGTGT 1096863 Query 61512 CGAGGGTGTATTTTTCAGTGGATCGTTTGCCGCAATCTTTTGGTTGAAGAAACGTGGACT 61571 |||||| | || ||| ||| || || ||| ||||||||| | ||||| || || || Sbjct 1096864 CGAGGGAATCTTCTTCTCTGGCTCCTTCTGCGCTATCTTTTGGCTCAAGAAGCGCGGCCT 1096923 Query 61572 TATGCCCGGTCTGACCTTCAGCAATGAGTTGATATCACGCGACGAGGGCATGCATTGTGA 61631 ||||| || || |||||| || ||| | || || || ||||||||| | ||||| || Sbjct 1096924 CATGCCGGGGCTCACCTTCTCGAACGAGCTTATCTCCCGTGACGAGGGCCTTCATTGCGA 1096983 Query 61632 TTTTGCTGTTTTGCTATTCAAACGCTATCTGGTGAATCGTCCGTCGGAGGAGCGTGTGGG 61691 || || | || || | || || || | ||||||||| ||||| | Sbjct 1096984 CTTCGC---CTGCCTCCTCTACAGCCTCCTCCGCAACAAGCTGTCGGAGGACCGTGTCCG 1097040 Query 61692 TGAGATTGTTCGTGAGGCGGTAACTATCGAACAGGAATTTCTGACTGACGCTTTGCCCGT 61751 | || ||| || || || ||||| | ||| ||| | |||||| | ||||| Sbjct 1097041 GGCCATCGTTGCCGACGCTGTCGACATCGAGCGGGAGTTTGTTTGTGACGCCCTTCCCGT 1097100 Query 61752 CTCACTCATCGGCATGAATTGTGGACTAATGTCGCAGTATATTGAATTTGTTGCCGACCG 61811 | ||| |||| ||||| | | || ||| ||||| || || ||||| |||||||| Sbjct 1097101 AGCCCTCGTCGGGATGAACGGCGACCTTATGAGCCAGTACATAGAGTTTGTGGCCGACCG 1097160 Query 61812 TCTG 61815 ||| Sbjct 1097161 CCTG 1097164 Score = 123 bits (136), Expect = 2e-23 Identities = 286/426 (67%), Gaps = 5/426 (1%) Strand=Plus/Plus Query 61213 GCGTTCTTTGCCGCTTCGGACGGTATCGTCAATGAGAATTTATTGGAACGTTTCGCGCAG 61272 || ||||| ||||| || || || ||||||| ||||| | | || ||| || Sbjct 33079139 GCCTTCTTCGCCGCCTCCGATGGCATCGTCATCGAGAACCTCGCCGCGCGCTTCATGCGC 33079198 Query 61273 GAGGTGCAAGTGTCGGAGGCGCGTTGTTTCTACGGCTTCCAGATTGCCATGGAGAATGTC 61332 || || || | | ||||| || ||||||||||||||||| ||||| ||||| || Sbjct 33079199 GACGTCCAGCTCCCCGAGGCCCGCGCCTTCTACGGCTTCCAGATCGCCATCGAGAACATC 33079258 Query 61333 CACTCGGAGATGTACAGTGTTCTCATCGATACGTACATCAGGGAGCGGGCGGA-ACGTGA 61391 ||||| ||||||||| | ||| |||| || ||| ||| ||| | | || | || | Sbjct 33079259 CACTCCGAGATGTACTCCCTCCTCCTCGACACCTACGTCAAGGACCCCGACGACAAGT-A 33079317 Query 61392 ACGATTGTTCAATGCCATCGAGACGATACCGGCGGTGAAGCGGAAAGCGGATTGGGCCTT 61451 || | ||| | |||||||| || | || || || || || || || |||||| | Sbjct 33079318 TCGCCTCTTCCACGCCATCGATACCGTCCCCGCCGTCGCCCGAAAGGCCGACTGGGCCCT 33079377 Query 61452 CAATTGGATCACCAGTACAACGGCTACATTTGGTGAACGATTGCTGGCATTTGCGGTGGT 61511 |||||| | | | ||||| | || | || || | | || || || || Sbjct 33079378 TCGCTGGATCG--ATTCCTCCGGCTCC-TTCGCCGAGCGCCTCGTTGCCTTCGCCTGCGT 33079434 Query 61512 CGAGGGTGTATTTTTCAGTGGATCGTTTGCCGCAATCTTTTGGTTGAAGAAACGTGGACT 61571 |||||| | || ||| || || || ||| ||||| ||| | |||||||| || || Sbjct 33079435 CGAGGGCATCTTCTTCTCCGGTTCCTTCTGCGCTATCTTCTGGCTCAAGAAACGCGGCCT 33079494 Query 61572 TATGCCCGGTCTGACCTTCAGCAATGAGTTGATATCACGCGACGAGGGCATGCATTGTGA 61631 |||||||| || |||||| ||| || | || || |||||||||||| | || || || Sbjct 33079495 CATGCCCGGCCTCACCTTCTCCAACGAACTCATCTCCCGCGACGAGGGCCTCCACTGCGA 33079554 Query 61632 TTTTGC 61637 || || Sbjct 33079555 CTTCGC 33079560 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397532827531760