Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Musa_20acuminata_20subsp._20malaccensis_20[refseq_20GCF_5F000313855.
2_202012-11-14] 7,259 sequences; 472,231,289 total letters
Query= NC_010671.1
Length=124279
Score E
Sequences producing significant alignments: (Bits) Value
seq6 168 5e-37
seq9 163 2e-35
>seq6
Length=34899179
Score = 168 bits (186), Expect = 5e-37
Identities = 548/840 (65%), Gaps = 17/840 (2%)
Strand=Plus/Plus
Query 61099 TACAAAAAGGCGGAAGCTTCCTTCTGGACGGTGGAGGAGGTCGATTTGTCCAAAGACATG 61158
||||||||||| | || ||||||||||||| ||||||||| || |||||| | || |
Sbjct 15336479 TACAAAAAGGCCGTGGCCTCCTTCTGGACGGCGGAGGAGGTGGACTTGTCCCAGGATCTC 15336538
Query 61159 AATGACTGGGAG---CGTTTATCGAGCGGTGAACAACATTTCATTAAACATGTGTTGGCG 61215
||||| || ||| | || || || || || ||||| ||||| | ||
Sbjct 15336539 TCCCACTGGCAGGATCGTCTGTCCGCCGACGAGCACCACTTCATCTCCCATGTCCTCGCC 15336598
Query 61216 TTCTTTGCCGCTTCGGACGGTATCGTCAATGAGAATTTATTGGAACGTTTCGCGCAGGAG 61275
|| |||||||| || ||||| |||||| ||||| | || || ||| || ||
Sbjct 15336599 TTTTTTGCCGCCTCCGACGGCATCGTCCTCGAGAACCTGGCGGCCCGGTTCATGCGCGAC 15336658
Query 61276 GTGCAAGTGTCGGAGGCGCGTTGTTTCTACGGCTTCCAGATTGCCATGGAGAATGTCCAC 61335
|| || | | ||||| || ||||||||||||||||| || || ||||| |||||
Sbjct 15336659 GTCCAGCTTCCTGAGGCCCGCGCCTTCTACGGCTTCCAGATCGCTATCGAGAACATCCAC 15336718
Query 61336 TCGGAGATGTACAGTGTTCTCATCGATACGTACATCAGGGA-GCGGGCGGAACGTGAACG 61394
|| |||||||| | | ||| |||| || ||||||| ||| | |||| | || ||
Sbjct 15336719 TCTGAGATGTATTCTCTCCTCCTCGACACCTACATCAAGGACCCCGGCGAGAAGT-CTCG 15336777
Query 61395 ATTGTTCAATGCCATCGAGACGATACCGGCGGTGAAGCGGAAAGCGGATTGGGCCTTCAA 61454
| ||| ||||||| || || | || | || || || || || ||||| |
Sbjct 15336778 CCTCTTCCATGCCATTGACACCGTCCCTCCTGTCGCCCGCAAGGCCGAGTGGGCGCTACG 15336837
Query 61455 TTGGATCACCAGTACAACGGCTACATTTGGTGAACGATTGCTGGCATTTGCGGTGGTCGA 61514
||||| | | | | | || |||| | || || | | || || || |||||
Sbjct 15336838 CTGGAT--CGAATCCTCTGTCT-CATTCGCCGAGCGCCTCGTTGCCTTCGCCTGCGTCGA 15336894
Query 61515 GGGTGTATTTTTCAGTGGATCGTTTGCCGCAATCTTTTGGTTGAAGAAACGTGGACTTAT 61574
||| || || ||| || || || ||| ||||| ||| | ||||| || || || ||
Sbjct 15336895 GGGAGTCTTCTTCTCCGGCTCCTTCTGCGCCATCTTCTGGCTCAAGAAGCGAGGCCTCAT 15336954
Query 61575 GCCCGGTCTGACCTTCAGCAATGAGTTGATATCACGCGACGAGGGCATGCATTGTGATTT 61634
||| ||||| |||||| || ||| | || || || ||||||||| | || || || ||
Sbjct 15336955 GCCGGGTCTCACCTTCTCAAACGAGCTCATCTCCCGTGACGAGGGCCTCCACTGCGACTT 15337014
Query 61635 TGCTGTTTTGCTATTCAAACGCTATCTGGTGAATCGTCCGTCGGAGGAGCGTGTGGGTGA 61694
|| | || || | | ||| || | || ||| | ||||| ||||
Sbjct 15337015 CGC---CTGCCTCCTCTACAGTCTTCTTCGCAACAAGCTCTCCGAGTACCGTGTCCGTGA 15337071
Query 61695 GATTGTTCGTGAGGCGGTAACTATCGAACAGGAATT--TCTGACTGACGCTTTGCCCGTC 61752
|| ||| || || || ||||| | |||||| |||| | || |||| |||
Sbjct 15337072 AATCGTTGCCGATGCCGTTGACATCGAGCGGGAATTCGTCTG--CAATGCCCTGCCGGTC 15337129
Query 61753 TCACTCATCGGCATGAATTGTGGACTAATGTCGCAGTATATTGAATTTGTTGCCGACCGT 61812
| || |||| |||||| | | || ||| |||||||| || || || ||||||||
Sbjct 15337130 GCCCTTGTCGGGATGAATGGCGACCTCATGAGTCAGTATATCGAGTTCGTGGCCGACCGC 15337189
Query 61813 CTG-TTGGTCGATTTGGGTATGAAGCGGATCTATAATACGAAAAACCCATTTGATTTCAT 61871
||| |||| | || || ||| | | || || ||||| || || | ||
Sbjct 15337190 CTGCTTGGAGCGCTAGGTTACGAA-AAGTTGTACGGGGCGGCCAACCCCTTCGACTGGAT 15337248
Query 61872 GGACATGATTTCGCTGGATGGCAAGACGAATTTTTTCGAGAAACGTGTAGGCGACTATCA 61931
||| | || |||||| | || ||||| || || |||||||| | || |||||||| ||
Sbjct 15337249 GGAGCTCATCTCGCTGCAGGGGAAGACAAACTTCTTCGAGAAGAGGGTCGGCGACTACCA 15337308
Score = 156 bits (172), Expect = 3e-33
Identities = 365/547 (67%), Gaps = 14/547 (3%)
Strand=Plus/Plus
Query 61099 TACAAAAAGGCGGAAGCTTCCTTCTGGACGGTGGAGGAGGTCGATTTGTCCAAAGACATG 61158
||||| ||||||| || ||||||||||| | |||||||| || |||| ||| |
Sbjct 4328197 TACAAGAAGGCGGTGGCCTCCTTCTGGACCGCAGAGGAGGTGGACCTGTCGCCGGACCTC 4328256
Query 61159 AATGACTGGGAGC---GTTTATCGAGCGGTGAACAACATTTCATTAAACATGTGTTGGCG 61215
| ||| ||| | | || || || | || ||| | || || | ||
Sbjct 4328257 TCCCAGTGGCAGCACCGCCTCTCCGACGACGAGCGCCACTTCGTCTCCCACGTCCTCGCC 4328316
Query 61216 TTCTTTGCCGCTTCGGACGGTATCGTCAATGAGAATTTATTGGAACGTTTCGCGCAGGAG 61275
|| |||||||| || ||||| |||||| ||||| | | || ||| || ||
Sbjct 4328317 TTTTTTGCCGCCTCCGACGGCATCGTCCTCGAGAACCTGGCCGCCCGCTTCATGCGCGAC 4328376
Query 61276 GTGCAAGTGTCGGAGGCGCGTTGTTTCTACGGCTTCCAGATTGCCATGGAGAATGTCCAC 61335
|| ||| | | ||||| || |||||||| ||||||||||| || ||||| |||||
Sbjct 4328377 GTCCAACTCCCCGAGGCCCGCGCCTTCTACGGTTTCCAGATTGCAATCGAGAACATCCAC 4328436
Query 61336 TCGGAGATGTACAGTGTTCTCATCGATACGTACATCAGGGAGCGGGCGGAACGTGAA--- 61392
|| ||||||||| |||| ||||||||||||||| ||| | | |||||||
Sbjct 4328437 TCCGAGATGTACTCCCTTCTACTCGATACGTACATCAAGGACCCCG----ACGTGAAGTT 4328492
Query 61393 -CGATTGTTCAATGCCATCGAGACGATACCGGCGGTGAAGCGGAAAGCGGATTGGGCCTT 61451
|| | ||| | || ||||| || | || || || ||||| || || ||||| |
Sbjct 4328493 TCGCCTCTTCCACGCGATCGACACCGTCCCTGCCGTCGCCCGGAAGGCCGAATGGGCTCT 4328552
Query 61452 CAATTGGATCACCAGTACAACGGCTACATTTGGTGAACGATTGCTGGCATTTGCGGTGGT 61511
| | ||||| ||| ||||| | || | || ||| | | || || || ||
Sbjct 4328553 CCAATGGAT--TGAGTCTTCCGGCT-CCTTCGCCGAGCGACTCGTCGCCTTCGCCTGCGT 4328609
Query 61512 CGAGGGTGTATTTTTCAGTGGATCGTTTGCCGCAATCTTTTGGTTGAAGAAACGTGGACT 61571
|||||| | |||||| || || || ||| ||||| ||| | ||||| || || ||
Sbjct 4328610 CGAGGGCATCTTTTTCTCCGGCTCCTTCTGCGCCATCTTCTGGCTCAAGAAGCGCGGCCT 4328669
Query 61572 TATGCCCGGTCTGACCTTCAGCAATGAGTTGATATCACGCGACGAGGGCATGCATTGTGA 61631
||||||||||| |||||| ||| ||| | || || || ||||||||| | || || ||
Sbjct 4328670 CATGCCCGGTCTCACCTTCTCCAACGAGCTCATCTCCCGTGACGAGGGCCTTCACTGCGA 4328729
Query 61632 TTTTGCT 61638
||||||
Sbjct 4328730 CTTTGCT 4328736
Score = 91.5 bits (100), Expect = 1e-13
Identities = 86/110 (78%), Gaps = 0/110 (0%)
Strand=Plus/Plus
Query 65152 CCAAGCATAGAAATGCATCGATGATAATTTTGCATAATTCGGCTCGGCCACATGCATATT 65211
|||||||||||| |||| ||||| || || || |||| |||| | ||| || |||||
Sbjct 13937880 CCAAGCATAGAAGTGCAGCGATGTTAGCTTCCCAAAATTTGGCTGGTCCATGTGGATATT 13937939
Query 65212 CAACGACTGACTCTGATCGATGTAACGACCACGATCTGCAGCCATGTCAA 65261
| |||||||||||| ||||||| |||||||| ||||||||||||
Sbjct 13937940 AAGGCTCTGACTCTGATCTATGTAACACCCACGATCAACAGCCATGTCAA 13937989
>seq9
Length=34148863
Score = 163 bits (180), Expect = 2e-35
Identities = 473/724 (65%), Gaps = 17/724 (2%)
Strand=Plus/Plus
Query 61099 TACAAAAAGGCGGAAGCTTCCTTCTGGACGGTGGAGGAGGTCGATTTGTCCAAAGACATG 61158
||||| ||||||| || ||||||||||||| ||||||||| ||| |||| ||| |
Sbjct 1096451 TACAAGAAGGCGGTGGCCTCCTTCTGGACGGCGGAGGAGGTGGATCTGTCTCCGGACGTA 1096510
Query 61159 AATGACTGGGAGCGTT---TATCGAGCGGTGAACAACATTTCATTAAACATGTGTTGGCG 61215
| ||| ||| | | || || || | || ||||| || || | ||
Sbjct 1096511 CCCCATTGGCAGCATCGCCTCTCCCACGACGAGCGCCACTTCATCTCCCACGTTCTTGCC 1096570
Query 61216 TTCTTTGCCGCTTCGGACGGTATCGTCAATGAGAATTTATTGGAACGTTTCGCGCAGGAG 61275
||||| ||||| || ||||| |||||| |||||| | | || ||| || ||
Sbjct 1096571 TTCTTCGCCGCCTCAGACGGCATCGTCCTTGAGAACCTCGCCGCCCGGTTCATGCGCGAC 1096630
Query 61276 GTGCAAGTGTCGGAGGCGCGTTGTTTCTACGGCTTCCAGATTGCCATGGAGAATGTCCAC 61335
|| || | | ||||| || ||||||||||||||||| ||||| ||||| |||||
Sbjct 1096631 GTCCAGCTCCCCGAGGCTCGCGCCTTCTACGGCTTCCAGATCGCCATCGAGAACATCCAC 1096690
Query 61336 TCGGAGATGTACAGTGTTCTCATCGATACGTACATCAGGGAGCGGGCGGAACGTGAA--- 61392
|| ||||||||| | ||| |||| || ||||||| ||| | | ||| |||
Sbjct 1096691 TCTGAGATGTACTCCCTCCTCCTCGACACCTACATCAAGGACCCTG----ACGAGAAGAC 1096746
Query 61393 -CGATTGTTCAATGCCATCGAGACGATACCGGCGGTGAAGCGGAAAGCGGATTGGGCCTT 61451
|| | ||| |||||||||||| | || | || || || || || |||||| |
Sbjct 1096747 CCGTCTCTTCCGAGCCATCGAGACGGTCCCCTCTGTCGCCCGAAAGGCCGACTGGGCCCT 1096806
Query 61452 CAATTGGATCACCAGTACAACGGCTACATTTGGTGAACGATTGCTGGCATTTGCGGTGGT 61511
||||| | | ||||| | |||| || ||| | | || || || ||
Sbjct 1096807 GCGCTGGAT--TGAATCTTCCGGCT-CGTTTGCCGAGCGAATTGTCGCCTTCGCCTGTGT 1096863
Query 61512 CGAGGGTGTATTTTTCAGTGGATCGTTTGCCGCAATCTTTTGGTTGAAGAAACGTGGACT 61571
|||||| | || ||| ||| || || ||| ||||||||| | ||||| || || ||
Sbjct 1096864 CGAGGGAATCTTCTTCTCTGGCTCCTTCTGCGCTATCTTTTGGCTCAAGAAGCGCGGCCT 1096923
Query 61572 TATGCCCGGTCTGACCTTCAGCAATGAGTTGATATCACGCGACGAGGGCATGCATTGTGA 61631
||||| || || |||||| || ||| | || || || ||||||||| | ||||| ||
Sbjct 1096924 CATGCCGGGGCTCACCTTCTCGAACGAGCTTATCTCCCGTGACGAGGGCCTTCATTGCGA 1096983
Query 61632 TTTTGCTGTTTTGCTATTCAAACGCTATCTGGTGAATCGTCCGTCGGAGGAGCGTGTGGG 61691
|| || | || || | || || || | ||||||||| ||||| |
Sbjct 1096984 CTTCGC---CTGCCTCCTCTACAGCCTCCTCCGCAACAAGCTGTCGGAGGACCGTGTCCG 1097040
Query 61692 TGAGATTGTTCGTGAGGCGGTAACTATCGAACAGGAATTTCTGACTGACGCTTTGCCCGT 61751
| || ||| || || || ||||| | ||| ||| | |||||| | |||||
Sbjct 1097041 GGCCATCGTTGCCGACGCTGTCGACATCGAGCGGGAGTTTGTTTGTGACGCCCTTCCCGT 1097100
Query 61752 CTCACTCATCGGCATGAATTGTGGACTAATGTCGCAGTATATTGAATTTGTTGCCGACCG 61811
| ||| |||| ||||| | | || ||| ||||| || || ||||| ||||||||
Sbjct 1097101 AGCCCTCGTCGGGATGAACGGCGACCTTATGAGCCAGTACATAGAGTTTGTGGCCGACCG 1097160
Query 61812 TCTG 61815
|||
Sbjct 1097161 CCTG 1097164
Score = 123 bits (136), Expect = 2e-23
Identities = 286/426 (67%), Gaps = 5/426 (1%)
Strand=Plus/Plus
Query 61213 GCGTTCTTTGCCGCTTCGGACGGTATCGTCAATGAGAATTTATTGGAACGTTTCGCGCAG 61272
|| ||||| ||||| || || || ||||||| ||||| | | || ||| ||
Sbjct 33079139 GCCTTCTTCGCCGCCTCCGATGGCATCGTCATCGAGAACCTCGCCGCGCGCTTCATGCGC 33079198
Query 61273 GAGGTGCAAGTGTCGGAGGCGCGTTGTTTCTACGGCTTCCAGATTGCCATGGAGAATGTC 61332
|| || || | | ||||| || ||||||||||||||||| ||||| ||||| ||
Sbjct 33079199 GACGTCCAGCTCCCCGAGGCCCGCGCCTTCTACGGCTTCCAGATCGCCATCGAGAACATC 33079258
Query 61333 CACTCGGAGATGTACAGTGTTCTCATCGATACGTACATCAGGGAGCGGGCGGA-ACGTGA 61391
||||| ||||||||| | ||| |||| || ||| ||| ||| | | || | || |
Sbjct 33079259 CACTCCGAGATGTACTCCCTCCTCCTCGACACCTACGTCAAGGACCCCGACGACAAGT-A 33079317
Query 61392 ACGATTGTTCAATGCCATCGAGACGATACCGGCGGTGAAGCGGAAAGCGGATTGGGCCTT 61451
|| | ||| | |||||||| || | || || || || || || || |||||| |
Sbjct 33079318 TCGCCTCTTCCACGCCATCGATACCGTCCCCGCCGTCGCCCGAAAGGCCGACTGGGCCCT 33079377
Query 61452 CAATTGGATCACCAGTACAACGGCTACATTTGGTGAACGATTGCTGGCATTTGCGGTGGT 61511
|||||| | | | ||||| | || | || || | | || || || ||
Sbjct 33079378 TCGCTGGATCG--ATTCCTCCGGCTCC-TTCGCCGAGCGCCTCGTTGCCTTCGCCTGCGT 33079434
Query 61512 CGAGGGTGTATTTTTCAGTGGATCGTTTGCCGCAATCTTTTGGTTGAAGAAACGTGGACT 61571
|||||| | || ||| || || || ||| ||||| ||| | |||||||| || ||
Sbjct 33079435 CGAGGGCATCTTCTTCTCCGGTTCCTTCTGCGCTATCTTCTGGCTCAAGAAACGCGGCCT 33079494
Query 61572 TATGCCCGGTCTGACCTTCAGCAATGAGTTGATATCACGCGACGAGGGCATGCATTGTGA 61631
|||||||| || |||||| ||| || | || || |||||||||||| | || || ||
Sbjct 33079495 CATGCCCGGCCTCACCTTCTCCAACGAACTCATCTCCCGCGACGAGGGCCTCCACTGCGA 33079554
Query 61632 TTTTGC 61637
|| ||
Sbjct 33079555 CTTCGC 33079560
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 397532827531760
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