Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Musa_20acuminata_20subsp._20malaccensis_20[refseq_20GCF_5F000313855. 2_202012-11-14] 7,259 sequences; 472,231,289 total letters Query= NC_031903.1 Length=172345 Score E Sequences producing significant alignments: (Bits) Value seq1382 181 1e-40 seq1063 170 2e-37 seq9 163 3e-35 seq10 161 1e-34 seq1042 100 3e-16 >seq1382 Length=172696 Score = 181 bits (200), Expect = 1e-40 Identities = 250/344 (73%), Gaps = 17/344 (5%) Strand=Plus/Plus Query 160320 AACACAATATCCTTATGCATCCGTTCCACATGCTCGGTGTTGCT--GGGGTATTCGGTGG 160377 ||||||| |||||||||||||| || ||||| | ||| | ||| || |||||||| || Sbjct 123495 AACACAACATCCTTATGCATCCATTGAACATGTTAGGTCTAGCTCTGGTGTATTCGGCGG 123554 Query 160378 ATCTCTGTTCTCTGCTATGCATGGATCTCTGGTTACTTCTAGTCTCGTCAGAGAGACGAC 160437 || || ||| |||||||||||| || |||| || |||||| | |||| || || || Sbjct 123555 CTCCCTATTCAGTGCTATGCATGGTTCCTTGGTAACCTCTAGTTTGATCAGGGAAACCAC 123614 Query 160438 AGAAACTGAGTC-CCAGAACTATGGTTACAAGTTCGGTCAAG----AGGAAGAGACTTAC 160492 |||| || || || | | ||||||| |||||||||| |||||||||||||| Sbjct 123615 TGAAAACGAATCTGCATTAGCA-GGTTACAGATTCGGTCAAGAAGAAGGAAGAGACTTAC 123673 Query 160493 AA-----CATCGTCGCAGCACATGGCTACTTCGGTCGTTTGATCTTCCAATATGCATCCT 160547 || || || || || ||||| || || | || |||||| |||||||||| | Sbjct 123674 AATAGAGTATTGTAGCTGCTCATGGTTATTTAAGCCGATTGATCCTCCAATATGCTAGTT 123733 Query 160548 TTAACAACTCACGCT--CTCTGCACTT--CTTCCTCGCTGCTTGGCCTGTTGTTGGAATC 160603 | |||||||| |||| ||| || | ||| | || |||||||| ||| |||| ||| Sbjct 123734 TCAACAACTCTCGCTACTTCTTGACATGGATTCTTGGCAGCTTGGCCAGTTATTGGTATC 123793 Query 160604 TGGTTCACTGCCCTTGGTGTTTCTACCATGGCATTCAATCTCAA 160647 ||| |||| || | ||| || |||||||| ||||| ||||| Sbjct 123794 TGGGTCACAGCTTTAGGTATTAGCACCATGGCTTTCAACCTCAA 123837 >seq1063 Length=431445 Score = 170 bits (188), Expect = 2e-37 Identities = 245/341 (72%), Gaps = 21/341 (6%) Strand=Plus/Minus Query 160262 GATGCTATGCCTCTTGGTATCTCTGGTACTTTTAACTATATGCTTGTATTCCAAGCAGAA 160321 |||| ||||||| |||| || ||||||||||| ||| ||| ||||||| | |||||| Sbjct 54225 GATGGTATGCCTTTTGGAATATCTGGTACTTTCTACTTCATGATTGTATTACTGGCAGAA 54166 Query 160322 CACAATATCCTTATGCATCCGTTCCACATGCTCGGTGTTG--CTGGGGTATTCGGTGGAT 160379 ||||| ||||||||||||| || |||||| | ||||| | |||| |||||||| Sbjct 54165 CACAACATCCTTATGCATCTATTTCACATGTTAGGTGTAGCTCTGGTGTATTCGG----- 54111 Query 160380 CTCTGTTCTCTGCTATGCATGGATCTCTGGTTACTTCTAGTCTCGTCAGAGAGACGACAG 160439 | || | |||||||||| || |||| ||| || || |||| || | || | Sbjct 54110 CCCT----AGTACTATGCATGGTTCCTTGGTCCACTCTTGTTTCATCAGGGAAATCACTG 54055 Query 160440 AAACTGAGTCCCAG--AACTATGGTTACAAGTTCGGTCAAGAGGAAGAGAC-TTACAA-- 160494 ||| || ||| | | | | || || |||||| ||||||||||||| |||||| Sbjct 54054 AAAACGAATCCGCGTTAGCAA--GTGACTGATTCGGTAAAGAGGAAGAGACTTTACAATA 53997 Query 160495 ---CATCGTCGCAGCACATGGCTACTTCGGTCGTTTGATCTTCCAATATGCATCCTTTAA 160551 || || || || ||||| || || | || ||||||||||||||||| || || Sbjct 53996 GAGTATTGTAGCTGCTCATGGTTATTTAAGCCGATTGATCTTCCAATATGCTAGTTTCAA 53937 Query 160552 CAACTCACGCTCTCTGCACTTCTTCCTCGCTGCTTGGCCTG 160592 |||||| || ||| | || |||||| | ||||| ||||||| Sbjct 53936 CAACTCTCGTTCTTTACATTTCTTCTTGGCTGCGTGGCCTG 53896 >seq9 Length=34148863 Score = 163 bits (180), Expect = 3e-35 Identities = 184/244 (75%), Gaps = 2/244 (1%) Strand=Plus/Plus Query 160130 TATATGGGTCGTGAGTGGGAACTCTCTTACCGTCTCGGTATGCGTCCCTGGATCTGTGTT 160189 || || | || ||||| ||||| || | ||| ||||||||||| ||||| |||| Sbjct 1506917 TACATTGATCATGAGTATGAACTTAGTTTCTATCTGGGTATGCGTCCTTGGATTGCTGTT 1506976 Query 160190 GCATACTCTGCTCCAGTCGCTGCTGCTTCTGCTGTATTCCTCGTCTACCCCTTCGGTCAG 160249 ||||| || ||||| || || |||||| ||||||| ||| | ||||||| | ||||| Sbjct 1506977 GCATATTCAGCTCCTGTTGCAGCTGCTACTGCTGTTTTCTTGATCTACCCTATTGGTCAA 1507036 Query 160250 GGTTCTTTCTCCGATGCTATGCCTCTTGGTATCTCTGGTACTTTTAACTATATG-CTTGT 160308 || |||||| |||| ||||||| | || || ||| | | ||| |||| ||| |||| Sbjct 1507037 GGAAGTTTCTCTGATGGTATGCCTTTAGGAATATCTAGCA-TTTCAACTTCATGTATTGT 1507095 Query 160309 ATTCCAAGCAGAACACAATATCCTTATGCATCCGTTCCACATGCTCGGTGTTGCTGGGGT 160368 ||| | ||||||||||| ||||||||||||| | | |||||| | ||||| |||| || Sbjct 1507096 ATTTCTGGCAGAACACAACATCCTTATGCATCTGGTTCACATGTTAGGTGTAACTGGTGT 1507155 Query 160369 ATTC 160372 |||| Sbjct 1507156 ATTC 1507159 >seq10 Length=33665772 Score = 161 bits (178), Expect = 1e-34 Identities = 243/341 (71%), Gaps = 21/341 (6%) Strand=Plus/Plus Query 160262 GATGCTATGCCTCTTGGTATCTCTGGTACTTTTAACTATATGCTTGTATTCCAAGCAGAA 160321 |||| ||||||| | || || ||||||||||| |||| ||| |||||||||| |||||| Sbjct 4332895 GATGGTATGCCTTTAGGAATATCTGGTACTTTCAACTTCATGATTGTATTCCAGGCAGAA 4332954 Query 160322 CACAATATCCTTATGCATCCGTTCCACATGCTCGGTGTTG--CTGGGGTATTCGGTGGAT 160379 ||||| ||||||||||||| || |||||| | ||||| | |||| |||||||| Sbjct 4332955 CACAACATCCTTATGCATCTATTTCACATGTTAGGTGTAGCTCTGGTGTATTCGG----- 4333009 Query 160380 CTCTGTTCTCTGCTATGCATGGATCTCTGGTTACTTCTAGTCTCGTCAGAGAGACGACAG 160439 | || | |||||||||| || |||| | ||| || || |||| || | || | Sbjct 4333010 CCCT----AGTACTATGCATGGTTCCTTGGTCAACTCTTGTTTCATCAGGGAAATCACTG 4333065 Query 160440 AAACTGAGTCCCAG--AACTATGGTTACAAGTTCGGTCAAGAGGAAGAGAC-TTACAA-- 160494 ||| || ||| | | | | || || |||||| ||||||||||||| |||||| Sbjct 4333066 AAAACGAATCCGCGTTAGCAA--GTGACTGATTCGGTAAAGAGGAAGAGACTTTACAATA 4333123 Query 160495 ---CATCGTCGCAGCACATGGCTACTTCGGTCGTTTGATCTTCCAATATGCATCCTTTAA 160551 ||| || | || ||||| || || | || |||| || ||||||||| || || Sbjct 4333124 GAGCATTGTAGTTGCTCATGGTTATTTAAGCCGATTGAACTGCCAATATGCTAGTTTCAA 4333183 Query 160552 CAACTCACGCTCTCTGCACTTCTTCCTCGCTGCTTGGCCTG 160592 |||||| ||| || |||||| | ||||| ||||||| Sbjct 4333184 CAACTCGACTTCTTGACATTTCTTCTTGGCTGCGTGGCCTG 4333224 >seq1042 Length=564079 Score = 100 bits (110), Expect = 3e-16 Identities = 87/108 (81%), Gaps = 0/108 (0%) Strand=Plus/Minus Query 160259 TCCGATGCTATGCCTCTTGGTATCTCTGGTACTTTTAACTATATGCTTGTATTCCAAGCA 160318 || |||| |||||||| || |||||||||||||| ||| ||| |||||||||| || Sbjct 550845 TCAGATGGTATGCCTCACGGAATCTCTGGTACTTTCCACTTCATGATTGTATTCCAGGCT 550786 Query 160319 GAACACAATATCCTTATGCATCCGTTCCACATGCTCGGTGTTGCTGGG 160366 || ||||| ||||||||||| || || ||||| | ||| |||||||| Sbjct 550785 GAGCACAACATCCTTATGCACCCATTTAACATGTTAGGTTTTGCTGGG 550738 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 551325969520200