Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Musa_20acuminata_20subsp._20malaccensis_20[refseq_20GCF_5F000313855.
2_202012-11-14] 7,259 sequences; 472,231,289 total letters
Query= NC_031903.1
Length=172345
Score E
Sequences producing significant alignments: (Bits) Value
seq1382 181 1e-40
seq1063 170 2e-37
seq9 163 3e-35
seq10 161 1e-34
seq1042 100 3e-16
>seq1382
Length=172696
Score = 181 bits (200), Expect = 1e-40
Identities = 250/344 (73%), Gaps = 17/344 (5%)
Strand=Plus/Plus
Query 160320 AACACAATATCCTTATGCATCCGTTCCACATGCTCGGTGTTGCT--GGGGTATTCGGTGG 160377
||||||| |||||||||||||| || ||||| | ||| | ||| || |||||||| ||
Sbjct 123495 AACACAACATCCTTATGCATCCATTGAACATGTTAGGTCTAGCTCTGGTGTATTCGGCGG 123554
Query 160378 ATCTCTGTTCTCTGCTATGCATGGATCTCTGGTTACTTCTAGTCTCGTCAGAGAGACGAC 160437
|| || ||| |||||||||||| || |||| || |||||| | |||| || || ||
Sbjct 123555 CTCCCTATTCAGTGCTATGCATGGTTCCTTGGTAACCTCTAGTTTGATCAGGGAAACCAC 123614
Query 160438 AGAAACTGAGTC-CCAGAACTATGGTTACAAGTTCGGTCAAG----AGGAAGAGACTTAC 160492
|||| || || || | | ||||||| |||||||||| ||||||||||||||
Sbjct 123615 TGAAAACGAATCTGCATTAGCA-GGTTACAGATTCGGTCAAGAAGAAGGAAGAGACTTAC 123673
Query 160493 AA-----CATCGTCGCAGCACATGGCTACTTCGGTCGTTTGATCTTCCAATATGCATCCT 160547
|| || || || || ||||| || || | || |||||| |||||||||| |
Sbjct 123674 AATAGAGTATTGTAGCTGCTCATGGTTATTTAAGCCGATTGATCCTCCAATATGCTAGTT 123733
Query 160548 TTAACAACTCACGCT--CTCTGCACTT--CTTCCTCGCTGCTTGGCCTGTTGTTGGAATC 160603
| |||||||| |||| ||| || | ||| | || |||||||| ||| |||| |||
Sbjct 123734 TCAACAACTCTCGCTACTTCTTGACATGGATTCTTGGCAGCTTGGCCAGTTATTGGTATC 123793
Query 160604 TGGTTCACTGCCCTTGGTGTTTCTACCATGGCATTCAATCTCAA 160647
||| |||| || | ||| || |||||||| ||||| |||||
Sbjct 123794 TGGGTCACAGCTTTAGGTATTAGCACCATGGCTTTCAACCTCAA 123837
>seq1063
Length=431445
Score = 170 bits (188), Expect = 2e-37
Identities = 245/341 (72%), Gaps = 21/341 (6%)
Strand=Plus/Minus
Query 160262 GATGCTATGCCTCTTGGTATCTCTGGTACTTTTAACTATATGCTTGTATTCCAAGCAGAA 160321
|||| ||||||| |||| || ||||||||||| ||| ||| ||||||| | ||||||
Sbjct 54225 GATGGTATGCCTTTTGGAATATCTGGTACTTTCTACTTCATGATTGTATTACTGGCAGAA 54166
Query 160322 CACAATATCCTTATGCATCCGTTCCACATGCTCGGTGTTG--CTGGGGTATTCGGTGGAT 160379
||||| ||||||||||||| || |||||| | ||||| | |||| ||||||||
Sbjct 54165 CACAACATCCTTATGCATCTATTTCACATGTTAGGTGTAGCTCTGGTGTATTCGG----- 54111
Query 160380 CTCTGTTCTCTGCTATGCATGGATCTCTGGTTACTTCTAGTCTCGTCAGAGAGACGACAG 160439
| || | |||||||||| || |||| ||| || || |||| || | || |
Sbjct 54110 CCCT----AGTACTATGCATGGTTCCTTGGTCCACTCTTGTTTCATCAGGGAAATCACTG 54055
Query 160440 AAACTGAGTCCCAG--AACTATGGTTACAAGTTCGGTCAAGAGGAAGAGAC-TTACAA-- 160494
||| || ||| | | | | || || |||||| ||||||||||||| ||||||
Sbjct 54054 AAAACGAATCCGCGTTAGCAA--GTGACTGATTCGGTAAAGAGGAAGAGACTTTACAATA 53997
Query 160495 ---CATCGTCGCAGCACATGGCTACTTCGGTCGTTTGATCTTCCAATATGCATCCTTTAA 160551
|| || || || ||||| || || | || ||||||||||||||||| || ||
Sbjct 53996 GAGTATTGTAGCTGCTCATGGTTATTTAAGCCGATTGATCTTCCAATATGCTAGTTTCAA 53937
Query 160552 CAACTCACGCTCTCTGCACTTCTTCCTCGCTGCTTGGCCTG 160592
|||||| || ||| | || |||||| | ||||| |||||||
Sbjct 53936 CAACTCTCGTTCTTTACATTTCTTCTTGGCTGCGTGGCCTG 53896
>seq9
Length=34148863
Score = 163 bits (180), Expect = 3e-35
Identities = 184/244 (75%), Gaps = 2/244 (1%)
Strand=Plus/Plus
Query 160130 TATATGGGTCGTGAGTGGGAACTCTCTTACCGTCTCGGTATGCGTCCCTGGATCTGTGTT 160189
|| || | || ||||| ||||| || | ||| ||||||||||| ||||| ||||
Sbjct 1506917 TACATTGATCATGAGTATGAACTTAGTTTCTATCTGGGTATGCGTCCTTGGATTGCTGTT 1506976
Query 160190 GCATACTCTGCTCCAGTCGCTGCTGCTTCTGCTGTATTCCTCGTCTACCCCTTCGGTCAG 160249
||||| || ||||| || || |||||| ||||||| ||| | ||||||| | |||||
Sbjct 1506977 GCATATTCAGCTCCTGTTGCAGCTGCTACTGCTGTTTTCTTGATCTACCCTATTGGTCAA 1507036
Query 160250 GGTTCTTTCTCCGATGCTATGCCTCTTGGTATCTCTGGTACTTTTAACTATATG-CTTGT 160308
|| |||||| |||| ||||||| | || || ||| | | ||| |||| ||| ||||
Sbjct 1507037 GGAAGTTTCTCTGATGGTATGCCTTTAGGAATATCTAGCA-TTTCAACTTCATGTATTGT 1507095
Query 160309 ATTCCAAGCAGAACACAATATCCTTATGCATCCGTTCCACATGCTCGGTGTTGCTGGGGT 160368
||| | ||||||||||| ||||||||||||| | | |||||| | ||||| |||| ||
Sbjct 1507096 ATTTCTGGCAGAACACAACATCCTTATGCATCTGGTTCACATGTTAGGTGTAACTGGTGT 1507155
Query 160369 ATTC 160372
||||
Sbjct 1507156 ATTC 1507159
>seq10
Length=33665772
Score = 161 bits (178), Expect = 1e-34
Identities = 243/341 (71%), Gaps = 21/341 (6%)
Strand=Plus/Plus
Query 160262 GATGCTATGCCTCTTGGTATCTCTGGTACTTTTAACTATATGCTTGTATTCCAAGCAGAA 160321
|||| ||||||| | || || ||||||||||| |||| ||| |||||||||| ||||||
Sbjct 4332895 GATGGTATGCCTTTAGGAATATCTGGTACTTTCAACTTCATGATTGTATTCCAGGCAGAA 4332954
Query 160322 CACAATATCCTTATGCATCCGTTCCACATGCTCGGTGTTG--CTGGGGTATTCGGTGGAT 160379
||||| ||||||||||||| || |||||| | ||||| | |||| ||||||||
Sbjct 4332955 CACAACATCCTTATGCATCTATTTCACATGTTAGGTGTAGCTCTGGTGTATTCGG----- 4333009
Query 160380 CTCTGTTCTCTGCTATGCATGGATCTCTGGTTACTTCTAGTCTCGTCAGAGAGACGACAG 160439
| || | |||||||||| || |||| | ||| || || |||| || | || |
Sbjct 4333010 CCCT----AGTACTATGCATGGTTCCTTGGTCAACTCTTGTTTCATCAGGGAAATCACTG 4333065
Query 160440 AAACTGAGTCCCAG--AACTATGGTTACAAGTTCGGTCAAGAGGAAGAGAC-TTACAA-- 160494
||| || ||| | | | | || || |||||| ||||||||||||| ||||||
Sbjct 4333066 AAAACGAATCCGCGTTAGCAA--GTGACTGATTCGGTAAAGAGGAAGAGACTTTACAATA 4333123
Query 160495 ---CATCGTCGCAGCACATGGCTACTTCGGTCGTTTGATCTTCCAATATGCATCCTTTAA 160551
||| || | || ||||| || || | || |||| || ||||||||| || ||
Sbjct 4333124 GAGCATTGTAGTTGCTCATGGTTATTTAAGCCGATTGAACTGCCAATATGCTAGTTTCAA 4333183
Query 160552 CAACTCACGCTCTCTGCACTTCTTCCTCGCTGCTTGGCCTG 160592
|||||| ||| || |||||| | ||||| |||||||
Sbjct 4333184 CAACTCGACTTCTTGACATTTCTTCTTGGCTGCGTGGCCTG 4333224
>seq1042
Length=564079
Score = 100 bits (110), Expect = 3e-16
Identities = 87/108 (81%), Gaps = 0/108 (0%)
Strand=Plus/Minus
Query 160259 TCCGATGCTATGCCTCTTGGTATCTCTGGTACTTTTAACTATATGCTTGTATTCCAAGCA 160318
|| |||| |||||||| || |||||||||||||| ||| ||| |||||||||| ||
Sbjct 550845 TCAGATGGTATGCCTCACGGAATCTCTGGTACTTTCCACTTCATGATTGTATTCCAGGCT 550786
Query 160319 GAACACAATATCCTTATGCATCCGTTCCACATGCTCGGTGTTGCTGGG 160366
|| ||||| ||||||||||| || || ||||| | ||| ||||||||
Sbjct 550785 GAGCACAACATCCTTATGCACCCATTTAACATGTTAGGTTTTGCTGGG 550738
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 551325969520200
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |