Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Musa_20acuminata_20subsp._20malaccensis_20[refseq_20GCF_5F000313855. 2_202012-11-14] 7,259 sequences; 472,231,289 total letters Query= NC_031906.1 Length=198190 Score E Sequences producing significant alignments: (Bits) Value seq1382 149 8e-31 seq9 125 9e-24 seq4 118 1e-21 seq1063 114 2e-20 seq1035 111 2e-19 seq10 109 7e-19 seq1024 93.3 5e-14 seq6 82.4 1e-10 >seq1382 Length=172696 Score = 149 bits (164), Expect = 8e-31 Identities = 243/343 (71%), Gaps = 19/343 (6%) Strand=Plus/Plus Query 189370 CACAACATCCTGATGCACCCCTTCCACATGCTGGGAGTCGCA--GGTGTCTTCGGTGGTT 189427 ||||||||||| ||||| || || ||||| | || | || ||||| ||||| || | Sbjct 123497 CACAACATCCTTATGCATCCATTGAACATGTTAGGTCTAGCTCTGGTGTATTCGGCGGCT 123556 Query 189428 CACTGTTCTCCGCAATGCATGGTTCACTCGTTACCTCTTCACTGGTTCGTGAAACCACTG 189487 | || ||| || ||||||||||| | || |||||| || | | |||||||||| Sbjct 123557 CCCTATTCAGTGCTATGCATGGTTCCTTGGTAACCTCTAGTTTGATCAGGGAAACCACTG 123616 Query 189488 AAACCGAGTCC-CAGAACTATGGTTACAAGTTTGGACAAGAAGAAGAAA----CGTACAA 189542 ||| ||| || || | | ||||||| || || |||||||||| || | ||||| Sbjct 123617 AAAACGAATCTGCATTAGCA-GGTTACAGATTCGGTCAAGAAGAAGGAAGAGACTTACAA 123675 Query 189543 CA-----TCGTTGCTGCTCATGGATATTTCGGTCGTCTTATCTTCCAATATGCATCGTTC 189597 | | || ||||||||||| ||||| | || | ||| |||||||||| ||| Sbjct 123676 TAGAGTATTGTAGCTGCTCATGGTTATTTAAGCCGATTGATCCTCCAATATGCTAGTTTC 123735 Query 189598 AACAACTCCCGTTCACTTC---ACTTC--TTCCTCGCTGCCTGGCCAGTCGTGGGTATCT 189652 |||||||| || | ||||| || | ||| | || || |||||||| | ||||||| Sbjct 123736 AACAACTCTCGCT-ACTTCTTGACATGGATTCTTGGCAGCTTGGCCAGTTATTGGTATCT 123794 Query 189653 GGTTTACCGCCCTCGGCGTCAGCACCATGGCATTCAACCTCAA 189695 || | || || | || | ||||||||||| ||||||||||| Sbjct 123795 GGGTCACAGCTTTAGGTATTAGCACCATGGCTTTCAACCTCAA 123837 >seq9 Length=34148863 Score = 125 bits (138), Expect = 9e-24 Identities = 178/245 (73%), Gaps = 4/245 (2%) Strand=Plus/Plus Query 189178 TACATGGGTCGTGAGTGGGAACTCTCTTACCGTCTCGGTATGCGTCCTTGGATCTGC-AT 189236 ||||| | || ||||| ||||| || | ||| ||||||||||||||||| ||| | Sbjct 1506917 TACATTGATCATGAGTATGAACTTAGTTTCTATCTGGGTATGCGTCCTTGGAT-TGCTGT 1506975 Query 189237 TGCTTACTCTGCACCTGTTGCAGCAGCATCCGCAGTCTTTCTGGTCTATCCTTTTGGTCA 189296 ||| || || || ||||||||||| || | || || || || |||| ||| ||||||| Sbjct 1506976 TGCATATTCAGCTCCTGTTGCAGCTGCTACTGCTGTTTTCTTGATCTACCCTATTGGTCA 1507035 Query 189297 AGGTTCTTTCTCTGACGCAATGCCCTTGGGTATCAGTGGAACCTTCAACTACATG-CTTG 189355 ||| ||||||||| | ||||| || || || | | | ||||||| |||| ||| Sbjct 1507036 AGGAAGTTTCTCTGATGGTATGCCTTTAGGAATATCTAGCA-TTTCAACTTCATGTATTG 1507094 Query 189356 TCTTCCAAGCAGAGCACAACATCCTGATGCACCCCTTCCACATGCTGGGAGTCGCAGGTG 189415 | || | ||||| ||||||||||| ||||| | | |||||| | || || | |||| Sbjct 1507095 TATTTCTGGCAGAACACAACATCCTTATGCATCTGGTTCACATGTTAGGTGTAACTGGTG 1507154 Query 189416 TCTTC 189420 | ||| Sbjct 1507155 TATTC 1507159 >seq4 Length=30051516 Score = 118 bits (130), Expect = 1e-21 Identities = 124/162 (77%), Gaps = 6/162 (4%) Strand=Plus/Plus Query 189673 AGCACCATGGCATTCAACCTCAATGGGTTCAACTTCAATCAATCCATTCTTGATGGTCAA 189732 ||||||||||| |||||||| ||||| ||||| ||||| |||||| | |||| |||| Sbjct 1282768 AGCACCATGGCTTTCAACCTAAATGGTTTCAATTTCAACCAATCCGTAGTTGACAGTCAG 1282827 Query 189733 GGTCGTGTTCTGAACACATGGGCAGACGTTCTCAACCGTGCTGGTCTTGGT----ATGGA 189788 |||||||| | || || ||| || | |||| |||||| ||||||| ||||| Sbjct 1282828 GGTCGTGTCATTAATAC--GGGTTGATATCATCAATCGTGCTCATCTTGGTATGGATGGA 1282885 Query 189789 AGTCATGCATGAGCGTAACGCTCACAACTTCCCTCTTGATCT 189830 ||| || ||||| ||||| ||||| ||||||||| | || || Sbjct 1282886 AGTAATACATGAACGTAATGCTCATAACTTCCCTTTAGACCT 1282927 >seq1063 Length=431445 Score = 114 bits (126), Expect = 2e-20 Identities = 229/334 (69%), Gaps = 23/334 (7%) Strand=Plus/Minus Query 189316 ATGCCCTTGGGTATCAGTGGAACCTTCAACTACATGCTTGTCTTCCAAGCAGAGCACAAC 189375 ||||| || || || ||| || ||| ||| |||| |||| || | ||||| |||||| Sbjct 54219 ATGCCTTTTGGAATATCTGGTACTTTCTACTTCATGATTGTATTACTGGCAGAACACAAC 54160 Query 189376 ATCCTGATGCACCCCTTCCACATGCTGGGAGTCGCA--GGTGTCTTCGGTGGTTCACT-G 189432 ||||| ||||| | || |||||| | || || || ||||| ||||| | || | Sbjct 54159 ATCCTTATGCATCTATTTCACATGTTAGGTGTAGCTCTGGTGTATTCGG-----CCCTAG 54105 Query 189433 TTCTCCGCAATGCATGGTTCACTCGTTACCTCTTCACTGGTTCGTGAAACCACTGAAACC 189492 | || ||||||||||| | || ||||| | | | |||| |||||||| | Sbjct 54104 TACT-----ATGCATGGTTCCTTGGTCCACTCTTGTTTCATCAGGGAAATCACTGAAAAC 54050 Query 189493 GAGTCCCAG--AACTATGGTTACAAGTTTGGACAAGAAGAAGAAACGT-ACAACA----- 189544 || ||| | | | | || || || || |||| ||||| || | |||| | Sbjct 54049 GAATCCGCGTTAGCAA--GTGACTGATTCGGTAAAGAGGAAGAGACTTTACAATAGAGTA 53992 Query 189545 TCGTTGCTGCTCATGGATATTTCGGTCGTCTTATCTTCCAATATGCATCGTTCAACAACT 189604 | || ||||||||||| ||||| | || | |||||||||||||| |||||||||| Sbjct 53991 TTGTAGCTGCTCATGGTTATTTAAGCCGATTGATCTTCCAATATGCTAGTTTCAACAACT 53932 Query 189605 CCCGTTCACTTCACTTCTTCCTCGCTGCCTGGCC 189638 | ||||| | || |||||| | ||||| ||||| Sbjct 53931 CTCGTTCTTTACATTTCTTCTTGGCTGCGTGGCC 53898 >seq1035 Length=594915 Score = 111 bits (122), Expect = 2e-19 Identities = 265/398 (67%), Gaps = 26/398 (7%) Strand=Plus/Plus Query 190461 TTCGGTGTGGCAGCGATCTTCCGCTTCCTCCTCTTCTTGCAGGGCTTCCATAACTGGACG 190520 || ||||| ||||| || || || | |||||| || || | | |||| |||||| Sbjct 236996 TTTGGTGTAGCAGCTATATTTCGATGAATCCTCTGATTCCAACGGTGGAATAATTGGACG 237055 Query 190521 CTGAACCCCTTCCACATGATGGGTGTTGCAGGTATCCTGGGAGGAGCACTACTGTCAGCA 190580 ||||||| || | |||||||| ||| ||| | | || | || || || | || Sbjct 237056 TTGAACCCTTTGAATATGATGGGAGTTT-AGGAGTATTAGGCGCTGCTCTGCTATGCGCT 237114 Query 190581 ATCCATGGTGTGACTGTAGAGAATACTTTGTATGAAGATGGTGAACAAGCAAACACGT-- 190638 || |||||| ||||| | || ||||| | ||||||||| | ||||| || | Sbjct 237115 ATTCATGGT----CTGTATAAAACACTTTATTCGAAGATGGTAACGGTGCAAATACATAC 237170 Query 190639 --TTAAAGCATTCGACTCTACACAAGAGGAAGAGACCTATTCGATGGTCACTGCCAACCG 190696 || || || || | || |||| |||||||| ||||| ||||||||||| ||||| Sbjct 237171 TGTTCGTGCTTTTAACCCAACTCAAGCCGAAGAGACTTATTCAATGGTCACTGCTAACCG 237230 Query 190697 TTTCTGGTCTCAAATC-----TTTGGTGTTGCGTTCAGTAATAAGAGGTGGTTGCATTTC 190751 ||| ||||| |||||| || || ||||| || ||||| | ||| | Sbjct 237231 TTTTTGGTCCCAAATCCATCTTTAGGGGTTGCTTTTTCCAATAACCGTTGG--------C 237282 Query 190752 TTTATGCTCTTTGTTCCTGTTATGGGTCTGTGGACTTCTTCCAT--CGGTATTA--TTGG 190807 ||||| | ||||| | || | ||| | |||| | | || |||| || | || Sbjct 237283 CTTATGTTTTTTGTATCCGTAACAGGTTTATGGATGAGTGCTATTGGGGTAGTAAGTCGG 237342 Query 190808 TCTTGCTCTCAACCTTCGTGCTTATGACTTTGTATCCC 190845 ||| ||||| || || ||||| |||||||| || |||| Sbjct 237343 TCTGGCTCTGAATCTACGTGCCTATGACTTCGTTTCCC 237380 >seq10 Length=33665772 Score = 109 bits (120), Expect = 7e-19 Identities = 228/334 (68%), Gaps = 23/334 (7%) Strand=Plus/Plus Query 189316 ATGCCCTTGGGTATCAGTGGAACCTTCAACTACATGCTTGTCTTCCAAGCAGAGCACAAC 189375 ||||| || || || ||| || ||||||| |||| |||| ||||| ||||| |||||| Sbjct 4332901 ATGCCTTTAGGAATATCTGGTACTTTCAACTTCATGATTGTATTCCAGGCAGAACACAAC 4332960 Query 189376 ATCCTGATGCACCCCTTCCACATGCTGGGAGT--CGCAGGTGTCTTCGGTGGTTCACT-G 189432 ||||| ||||| | || |||||| | || || | | ||||| ||||| | || | Sbjct 4332961 ATCCTTATGCATCTATTTCACATGTTAGGTGTAGCTCTGGTGTATTCGG-----CCCTAG 4333015 Query 189433 TTCTCCGCAATGCATGGTTCACTCGTTACCTCTTCACTGGTTCGTGAAACCACTGAAACC 189492 | || ||||||||||| | || | ||||| | | | |||| |||||||| | Sbjct 4333016 TACT-----ATGCATGGTTCCTTGGTCAACTCTTGTTTCATCAGGGAAATCACTGAAAAC 4333070 Query 189493 GAGTCCCAG--AACTATGGTTACAAGTTTGGACAAGAAGAAGAAAC-GTACAA-----CA 189544 || ||| | | | | || || || || |||| ||||| || ||||| || Sbjct 4333071 GAATCCGCGTTAGCAA--GTGACTGATTCGGTAAAGAGGAAGAGACTTTACAATAGAGCA 4333128 Query 189545 TCGTTGCTGCTCATGGATATTTCGGTCGTCTTATCTTCCAATATGCATCGTTCAACAACT 189604 | || | ||||||||| ||||| | || | | || ||||||||| |||||||||| Sbjct 4333129 TTGTAGTTGCTCATGGTTATTTAAGCCGATTGAACTGCCAATATGCTAGTTTCAACAACT 4333188 Query 189605 CCCGTTCACTTCACTTCTTCCTCGCTGCCTGGCC 189638 | ||| || |||||| | ||||| ||||| Sbjct 4333189 CGACTTCTTGACATTTCTTCTTGGCTGCGTGGCC 4333222 >seq1024 Length=717246 Score = 93.3 bits (102), Expect = 5e-14 Identities = 72/86 (84%), Gaps = 0/86 (0%) Strand=Plus/Plus Query 189745 AACACATGGGCAGACGTTCTCAACCGTGCTGGTCTTGGTATGGAAGTCATGCATGAGCGT 189804 ||||| ||||| || | ||||||||||| |||||||||||||| |||||||| ||| Sbjct 156788 AACACTTGGGCTGATATCATCAACCGTGCTAACCTTGGTATGGAAGTAATGCATGAACGT 156847 Query 189805 AACGCTCACAACTTCCCTCTTGATCT 189830 || ||||||||||||||||| || || Sbjct 156848 AATGCTCACAACTTCCCTCTAGACCT 156873 >seq6 Length=34899179 Score = 82.4 bits (90), Expect = 1e-10 Identities = 101/136 (74%), Gaps = 4/136 (3%) Strand=Plus/Minus Query 190204 ATTCTCTTCTTCTACTTTGGGGTCCTGAATCTCAAGGCGATTTCGTCAGGTGGATCCAAC 190263 ||||| | | ||||| |||||||||||| | ||||| ||||| |||| |||| Sbjct 26461273 ATTCTTTGTTGCTACTATGGGGTCCTGAAGCACAAGGAGATTTTACTCGGTG---CCAAT 26461217 Query 190264 TTGGGGGACTCTGGGCTTTTGTGGCGCTCCACGGGGCTTTCGCTCTAATTGGATTCATGC 190323 | || || || ||| ||||||| || ||||| || |||||||| ||||| || || ||| Sbjct 26461216 TAGGCGGTCTGTGGACTTTTGTTGCTCTCCATGGTGCTTTCGCACTAATAGGCTT-ATGT 26461158 Query 190324 TTCGTCAGTTTGAACT 190339 | ||||| || |||| Sbjct 26461157 TACGTCAATTCTAACT 26461142 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 634022465166000