Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Musa_20acuminata_20subsp._20malaccensis_20[refseq_20GCF_5F000313855.
2_202012-11-14] 7,259 sequences; 472,231,289 total letters
Query= NC_031906.1
Length=198190
Score E
Sequences producing significant alignments: (Bits) Value
seq1382 149 8e-31
seq9 125 9e-24
seq4 118 1e-21
seq1063 114 2e-20
seq1035 111 2e-19
seq10 109 7e-19
seq1024 93.3 5e-14
seq6 82.4 1e-10
>seq1382
Length=172696
Score = 149 bits (164), Expect = 8e-31
Identities = 243/343 (71%), Gaps = 19/343 (6%)
Strand=Plus/Plus
Query 189370 CACAACATCCTGATGCACCCCTTCCACATGCTGGGAGTCGCA--GGTGTCTTCGGTGGTT 189427
||||||||||| ||||| || || ||||| | || | || ||||| ||||| || |
Sbjct 123497 CACAACATCCTTATGCATCCATTGAACATGTTAGGTCTAGCTCTGGTGTATTCGGCGGCT 123556
Query 189428 CACTGTTCTCCGCAATGCATGGTTCACTCGTTACCTCTTCACTGGTTCGTGAAACCACTG 189487
| || ||| || ||||||||||| | || |||||| || | | ||||||||||
Sbjct 123557 CCCTATTCAGTGCTATGCATGGTTCCTTGGTAACCTCTAGTTTGATCAGGGAAACCACTG 123616
Query 189488 AAACCGAGTCC-CAGAACTATGGTTACAAGTTTGGACAAGAAGAAGAAA----CGTACAA 189542
||| ||| || || | | ||||||| || || |||||||||| || | |||||
Sbjct 123617 AAAACGAATCTGCATTAGCA-GGTTACAGATTCGGTCAAGAAGAAGGAAGAGACTTACAA 123675
Query 189543 CA-----TCGTTGCTGCTCATGGATATTTCGGTCGTCTTATCTTCCAATATGCATCGTTC 189597
| | || ||||||||||| ||||| | || | ||| |||||||||| |||
Sbjct 123676 TAGAGTATTGTAGCTGCTCATGGTTATTTAAGCCGATTGATCCTCCAATATGCTAGTTTC 123735
Query 189598 AACAACTCCCGTTCACTTC---ACTTC--TTCCTCGCTGCCTGGCCAGTCGTGGGTATCT 189652
|||||||| || | ||||| || | ||| | || || |||||||| | |||||||
Sbjct 123736 AACAACTCTCGCT-ACTTCTTGACATGGATTCTTGGCAGCTTGGCCAGTTATTGGTATCT 123794
Query 189653 GGTTTACCGCCCTCGGCGTCAGCACCATGGCATTCAACCTCAA 189695
|| | || || | || | ||||||||||| |||||||||||
Sbjct 123795 GGGTCACAGCTTTAGGTATTAGCACCATGGCTTTCAACCTCAA 123837
>seq9
Length=34148863
Score = 125 bits (138), Expect = 9e-24
Identities = 178/245 (73%), Gaps = 4/245 (2%)
Strand=Plus/Plus
Query 189178 TACATGGGTCGTGAGTGGGAACTCTCTTACCGTCTCGGTATGCGTCCTTGGATCTGC-AT 189236
||||| | || ||||| ||||| || | ||| ||||||||||||||||| ||| |
Sbjct 1506917 TACATTGATCATGAGTATGAACTTAGTTTCTATCTGGGTATGCGTCCTTGGAT-TGCTGT 1506975
Query 189237 TGCTTACTCTGCACCTGTTGCAGCAGCATCCGCAGTCTTTCTGGTCTATCCTTTTGGTCA 189296
||| || || || ||||||||||| || | || || || || |||| ||| |||||||
Sbjct 1506976 TGCATATTCAGCTCCTGTTGCAGCTGCTACTGCTGTTTTCTTGATCTACCCTATTGGTCA 1507035
Query 189297 AGGTTCTTTCTCTGACGCAATGCCCTTGGGTATCAGTGGAACCTTCAACTACATG-CTTG 189355
||| ||||||||| | ||||| || || || | | | ||||||| |||| |||
Sbjct 1507036 AGGAAGTTTCTCTGATGGTATGCCTTTAGGAATATCTAGCA-TTTCAACTTCATGTATTG 1507094
Query 189356 TCTTCCAAGCAGAGCACAACATCCTGATGCACCCCTTCCACATGCTGGGAGTCGCAGGTG 189415
| || | ||||| ||||||||||| ||||| | | |||||| | || || | ||||
Sbjct 1507095 TATTTCTGGCAGAACACAACATCCTTATGCATCTGGTTCACATGTTAGGTGTAACTGGTG 1507154
Query 189416 TCTTC 189420
| |||
Sbjct 1507155 TATTC 1507159
>seq4
Length=30051516
Score = 118 bits (130), Expect = 1e-21
Identities = 124/162 (77%), Gaps = 6/162 (4%)
Strand=Plus/Plus
Query 189673 AGCACCATGGCATTCAACCTCAATGGGTTCAACTTCAATCAATCCATTCTTGATGGTCAA 189732
||||||||||| |||||||| ||||| ||||| ||||| |||||| | |||| ||||
Sbjct 1282768 AGCACCATGGCTTTCAACCTAAATGGTTTCAATTTCAACCAATCCGTAGTTGACAGTCAG 1282827
Query 189733 GGTCGTGTTCTGAACACATGGGCAGACGTTCTCAACCGTGCTGGTCTTGGT----ATGGA 189788
|||||||| | || || ||| || | |||| |||||| ||||||| |||||
Sbjct 1282828 GGTCGTGTCATTAATAC--GGGTTGATATCATCAATCGTGCTCATCTTGGTATGGATGGA 1282885
Query 189789 AGTCATGCATGAGCGTAACGCTCACAACTTCCCTCTTGATCT 189830
||| || ||||| ||||| ||||| ||||||||| | || ||
Sbjct 1282886 AGTAATACATGAACGTAATGCTCATAACTTCCCTTTAGACCT 1282927
>seq1063
Length=431445
Score = 114 bits (126), Expect = 2e-20
Identities = 229/334 (69%), Gaps = 23/334 (7%)
Strand=Plus/Minus
Query 189316 ATGCCCTTGGGTATCAGTGGAACCTTCAACTACATGCTTGTCTTCCAAGCAGAGCACAAC 189375
||||| || || || ||| || ||| ||| |||| |||| || | ||||| ||||||
Sbjct 54219 ATGCCTTTTGGAATATCTGGTACTTTCTACTTCATGATTGTATTACTGGCAGAACACAAC 54160
Query 189376 ATCCTGATGCACCCCTTCCACATGCTGGGAGTCGCA--GGTGTCTTCGGTGGTTCACT-G 189432
||||| ||||| | || |||||| | || || || ||||| ||||| | || |
Sbjct 54159 ATCCTTATGCATCTATTTCACATGTTAGGTGTAGCTCTGGTGTATTCGG-----CCCTAG 54105
Query 189433 TTCTCCGCAATGCATGGTTCACTCGTTACCTCTTCACTGGTTCGTGAAACCACTGAAACC 189492
| || ||||||||||| | || ||||| | | | |||| |||||||| |
Sbjct 54104 TACT-----ATGCATGGTTCCTTGGTCCACTCTTGTTTCATCAGGGAAATCACTGAAAAC 54050
Query 189493 GAGTCCCAG--AACTATGGTTACAAGTTTGGACAAGAAGAAGAAACGT-ACAACA----- 189544
|| ||| | | | | || || || || |||| ||||| || | |||| |
Sbjct 54049 GAATCCGCGTTAGCAA--GTGACTGATTCGGTAAAGAGGAAGAGACTTTACAATAGAGTA 53992
Query 189545 TCGTTGCTGCTCATGGATATTTCGGTCGTCTTATCTTCCAATATGCATCGTTCAACAACT 189604
| || ||||||||||| ||||| | || | |||||||||||||| ||||||||||
Sbjct 53991 TTGTAGCTGCTCATGGTTATTTAAGCCGATTGATCTTCCAATATGCTAGTTTCAACAACT 53932
Query 189605 CCCGTTCACTTCACTTCTTCCTCGCTGCCTGGCC 189638
| ||||| | || |||||| | ||||| |||||
Sbjct 53931 CTCGTTCTTTACATTTCTTCTTGGCTGCGTGGCC 53898
>seq1035
Length=594915
Score = 111 bits (122), Expect = 2e-19
Identities = 265/398 (67%), Gaps = 26/398 (7%)
Strand=Plus/Plus
Query 190461 TTCGGTGTGGCAGCGATCTTCCGCTTCCTCCTCTTCTTGCAGGGCTTCCATAACTGGACG 190520
|| ||||| ||||| || || || | |||||| || || | | |||| ||||||
Sbjct 236996 TTTGGTGTAGCAGCTATATTTCGATGAATCCTCTGATTCCAACGGTGGAATAATTGGACG 237055
Query 190521 CTGAACCCCTTCCACATGATGGGTGTTGCAGGTATCCTGGGAGGAGCACTACTGTCAGCA 190580
||||||| || | |||||||| ||| ||| | | || | || || || | ||
Sbjct 237056 TTGAACCCTTTGAATATGATGGGAGTTT-AGGAGTATTAGGCGCTGCTCTGCTATGCGCT 237114
Query 190581 ATCCATGGTGTGACTGTAGAGAATACTTTGTATGAAGATGGTGAACAAGCAAACACGT-- 190638
|| |||||| ||||| | || ||||| | ||||||||| | ||||| || |
Sbjct 237115 ATTCATGGT----CTGTATAAAACACTTTATTCGAAGATGGTAACGGTGCAAATACATAC 237170
Query 190639 --TTAAAGCATTCGACTCTACACAAGAGGAAGAGACCTATTCGATGGTCACTGCCAACCG 190696
|| || || || | || |||| |||||||| ||||| ||||||||||| |||||
Sbjct 237171 TGTTCGTGCTTTTAACCCAACTCAAGCCGAAGAGACTTATTCAATGGTCACTGCTAACCG 237230
Query 190697 TTTCTGGTCTCAAATC-----TTTGGTGTTGCGTTCAGTAATAAGAGGTGGTTGCATTTC 190751
||| ||||| |||||| || || ||||| || ||||| | ||| |
Sbjct 237231 TTTTTGGTCCCAAATCCATCTTTAGGGGTTGCTTTTTCCAATAACCGTTGG--------C 237282
Query 190752 TTTATGCTCTTTGTTCCTGTTATGGGTCTGTGGACTTCTTCCAT--CGGTATTA--TTGG 190807
||||| | ||||| | || | ||| | |||| | | || |||| || | ||
Sbjct 237283 CTTATGTTTTTTGTATCCGTAACAGGTTTATGGATGAGTGCTATTGGGGTAGTAAGTCGG 237342
Query 190808 TCTTGCTCTCAACCTTCGTGCTTATGACTTTGTATCCC 190845
||| ||||| || || ||||| |||||||| || ||||
Sbjct 237343 TCTGGCTCTGAATCTACGTGCCTATGACTTCGTTTCCC 237380
>seq10
Length=33665772
Score = 109 bits (120), Expect = 7e-19
Identities = 228/334 (68%), Gaps = 23/334 (7%)
Strand=Plus/Plus
Query 189316 ATGCCCTTGGGTATCAGTGGAACCTTCAACTACATGCTTGTCTTCCAAGCAGAGCACAAC 189375
||||| || || || ||| || ||||||| |||| |||| ||||| ||||| ||||||
Sbjct 4332901 ATGCCTTTAGGAATATCTGGTACTTTCAACTTCATGATTGTATTCCAGGCAGAACACAAC 4332960
Query 189376 ATCCTGATGCACCCCTTCCACATGCTGGGAGT--CGCAGGTGTCTTCGGTGGTTCACT-G 189432
||||| ||||| | || |||||| | || || | | ||||| ||||| | || |
Sbjct 4332961 ATCCTTATGCATCTATTTCACATGTTAGGTGTAGCTCTGGTGTATTCGG-----CCCTAG 4333015
Query 189433 TTCTCCGCAATGCATGGTTCACTCGTTACCTCTTCACTGGTTCGTGAAACCACTGAAACC 189492
| || ||||||||||| | || | ||||| | | | |||| |||||||| |
Sbjct 4333016 TACT-----ATGCATGGTTCCTTGGTCAACTCTTGTTTCATCAGGGAAATCACTGAAAAC 4333070
Query 189493 GAGTCCCAG--AACTATGGTTACAAGTTTGGACAAGAAGAAGAAAC-GTACAA-----CA 189544
|| ||| | | | | || || || || |||| ||||| || ||||| ||
Sbjct 4333071 GAATCCGCGTTAGCAA--GTGACTGATTCGGTAAAGAGGAAGAGACTTTACAATAGAGCA 4333128
Query 189545 TCGTTGCTGCTCATGGATATTTCGGTCGTCTTATCTTCCAATATGCATCGTTCAACAACT 189604
| || | ||||||||| ||||| | || | | || ||||||||| ||||||||||
Sbjct 4333129 TTGTAGTTGCTCATGGTTATTTAAGCCGATTGAACTGCCAATATGCTAGTTTCAACAACT 4333188
Query 189605 CCCGTTCACTTCACTTCTTCCTCGCTGCCTGGCC 189638
| ||| || |||||| | ||||| |||||
Sbjct 4333189 CGACTTCTTGACATTTCTTCTTGGCTGCGTGGCC 4333222
>seq1024
Length=717246
Score = 93.3 bits (102), Expect = 5e-14
Identities = 72/86 (84%), Gaps = 0/86 (0%)
Strand=Plus/Plus
Query 189745 AACACATGGGCAGACGTTCTCAACCGTGCTGGTCTTGGTATGGAAGTCATGCATGAGCGT 189804
||||| ||||| || | ||||||||||| |||||||||||||| |||||||| |||
Sbjct 156788 AACACTTGGGCTGATATCATCAACCGTGCTAACCTTGGTATGGAAGTAATGCATGAACGT 156847
Query 189805 AACGCTCACAACTTCCCTCTTGATCT 189830
|| ||||||||||||||||| || ||
Sbjct 156848 AATGCTCACAACTTCCCTCTAGACCT 156873
>seq6
Length=34899179
Score = 82.4 bits (90), Expect = 1e-10
Identities = 101/136 (74%), Gaps = 4/136 (3%)
Strand=Plus/Minus
Query 190204 ATTCTCTTCTTCTACTTTGGGGTCCTGAATCTCAAGGCGATTTCGTCAGGTGGATCCAAC 190263
||||| | | ||||| |||||||||||| | ||||| ||||| |||| ||||
Sbjct 26461273 ATTCTTTGTTGCTACTATGGGGTCCTGAAGCACAAGGAGATTTTACTCGGTG---CCAAT 26461217
Query 190264 TTGGGGGACTCTGGGCTTTTGTGGCGCTCCACGGGGCTTTCGCTCTAATTGGATTCATGC 190323
| || || || ||| ||||||| || ||||| || |||||||| ||||| || || |||
Sbjct 26461216 TAGGCGGTCTGTGGACTTTTGTTGCTCTCCATGGTGCTTTCGCACTAATAGGCTT-ATGT 26461158
Query 190324 TTCGTCAGTTTGAACT 190339
| ||||| || ||||
Sbjct 26461157 TACGTCAATTCTAACT 26461142
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 634022465166000
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