Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Musa_20acuminata_20subsp._20malaccensis_20[refseq_20GCF_5F000313855. 2_202012-11-14] 7,259 sequences; 472,231,289 total letters Query= NC_031922.1 Length=174830 Score E Sequences producing significant alignments: (Bits) Value seq1063 178 1e-39 seq1382 176 5e-39 seq10 174 2e-38 seq9 163 3e-35 seq1035 136 4e-27 seq1042 122 1e-22 seq1024 105 7e-18 seq4 105 7e-18 >seq1063 Length=431445 Score = 178 bits (196), Expect = 1e-39 Identities = 248/342 (73%), Gaps = 23/342 (7%) Strand=Plus/Minus Query 161031 GATGGTATGCCCCTGGGTATCTCTGGTACCTTCAACTTCATGCTTGTCTTCCAGGCAGAA 161090 ||||||||||| | || || |||||||| ||| |||||||| |||| || | ||||||| Sbjct 54225 GATGGTATGCCTTTTGGAATATCTGGTACTTTCTACTTCATGATTGTATTACTGGCAGAA 54166 Query 161091 CACAACATCCTGATGCACCCCTTCCACATGTTGGGTGTTG--CTGGTGTCTTCGGTGGTT 161148 ||||||||||| ||||| | || |||||||| ||||| | ||||||| ||||| Sbjct 54165 CACAACATCCTTATGCATCTATTTCACATGTTAGGTGTAGCTCTGGTGTATTCGG----- 54111 Query 161149 CTCT-GTTCTCCGCAATGCATGGTTCACTGGTTACTTCTTCCCTGGTTCGTGAAACCACT 161207 | || || || ||||||||||| |||| |||| | | | |||| |||| Sbjct 54110 CCCTAGTACT-----ATGCATGGTTCCTTGGTCCACTCTTGTTTCATCAGGGAAATCACT 54056 Query 161208 GAGAACGAGTCCCAG--AACTATGGTTACAAGTTTGGTCAAGAAGAAGAGAC-CTACAA- 161263 || ||||| ||| | | | | || || || ||| |||| |||||||| ||||| Sbjct 54055 GAAAACGAATCCGCGTTAGCAA--GTGACTGATTCGGTAAAGAGGAAGAGACTTTACAAT 53998 Query 161264 ----CATCGTCGCTGCTCATGGTTACTTCGGTCGCCTGATCTTCCAATACGCTTCCTTCA 161319 || || |||||||||||||| || | || ||||||||||||| ||| |||| Sbjct 53997 AGAGTATTGTAGCTGCTCATGGTTATTTAAGCCGATTGATCTTCCAATATGCTAGTTTCA 53938 Query 161320 ACAACTCCCGTTCGTTGCACTTCTTCCTCGCAGCATGGCCTG 161361 ||||||| ||||| || || |||||| | || || ||||||| Sbjct 53937 ACAACTCTCGTTCTTTACATTTCTTCTTGGCTGCGTGGCCTG 53896 >seq1382 Length=172696 Score = 176 bits (194), Expect = 5e-39 Identities = 248/344 (72%), Gaps = 17/344 (5%) Strand=Plus/Plus Query 161089 AACACAACATCCTGATGCACCCCTTCCACATGTTGGGTGTTGCT--GGTGTCTTCGGTGG 161146 ||||||||||||| ||||| || || ||||||| ||| | ||| ||||| ||||| || Sbjct 123495 AACACAACATCCTTATGCATCCATTGAACATGTTAGGTCTAGCTCTGGTGTATTCGGCGG 123554 Query 161147 TTCTCTGTTCTCCGCAATGCATGGTTCACTGGTTACTTCTTCCCTGGTTCGTGAAACCAC 161206 || || ||| || ||||||||||| |||| || ||| || | | |||||||| Sbjct 123555 CTCCCTATTCAGTGCTATGCATGGTTCCTTGGTAACCTCTAGTTTGATCAGGGAAACCAC 123614 Query 161207 TGAGAACGAGTC-CCAGAACTATGGTTACAAGTTTGGTCAAGAA----GAAGAGACCTAC 161261 ||| ||||| || || | | ||||||| || ||||||||| |||||||| ||| Sbjct 123615 TGAAAACGAATCTGCATTAGCA-GGTTACAGATTCGGTCAAGAAGAAGGAAGAGACTTAC 123673 Query 161262 AA-----CATCGTCGCTGCTCATGGTTACTTCGGTCGCCTGATCTTCCAATACGCTTCCT 161316 || || || |||||||||||||| || | || ||||| ||||||| ||| | Sbjct 123674 AATAGAGTATTGTAGCTGCTCATGGTTATTTAAGCCGATTGATCCTCCAATATGCTAGTT 123733 Query 161317 TCAACAACTCCCG----TTCGTTGCACTTCTTCCTCGCAGCATGGCCTGTTGTCGGTATC 161372 |||||||||| || ||| | || ||| | ||||| ||||| ||| | |||||| Sbjct 123734 TCAACAACTCTCGCTACTTCTTGACATGGATTCTTGGCAGCTTGGCCAGTTATTGGTATC 123793 Query 161373 TGGTTCACTGCACTTGGTGTCTCCACCATGGCATTCAACCTGAA 161416 ||| |||| || | ||| | ||||||||| |||||||| || Sbjct 123794 TGGGTCACAGCTTTAGGTATTAGCACCATGGCTTTCAACCTCAA 123837 >seq10 Length=33665772 Score = 174 bits (192), Expect = 2e-38 Identities = 247/342 (72%), Gaps = 23/342 (7%) Strand=Plus/Plus Query 161031 GATGGTATGCCCCTGGGTATCTCTGGTACCTTCAACTTCATGCTTGTCTTCCAGGCAGAA 161090 ||||||||||| | || || |||||||| |||||||||||| |||| |||||||||||| Sbjct 4332895 GATGGTATGCCTTTAGGAATATCTGGTACTTTCAACTTCATGATTGTATTCCAGGCAGAA 4332954 Query 161091 CACAACATCCTGATGCACCCCTTCCACATGTTGGGTGTTG--CTGGTGTCTTCGGTGGTT 161148 ||||||||||| ||||| | || |||||||| ||||| | ||||||| ||||| Sbjct 4332955 CACAACATCCTTATGCATCTATTTCACATGTTAGGTGTAGCTCTGGTGTATTCGG----- 4333009 Query 161149 CTCT-GTTCTCCGCAATGCATGGTTCACTGGTTACTTCTTCCCTGGTTCGTGAAACCACT 161207 | || || || ||||||||||| |||| | |||| | | | |||| |||| Sbjct 4333010 CCCTAGTACT-----ATGCATGGTTCCTTGGTCAACTCTTGTTTCATCAGGGAAATCACT 4333064 Query 161208 GAGAACGAGTCCCAG--AACTATGGTTACAAGTTTGGTCAAGAAGAAGAGAC-CTACAA- 161263 || ||||| ||| | | | | || || || ||| |||| |||||||| ||||| Sbjct 4333065 GAAAACGAATCCGCGTTAGCAA--GTGACTGATTCGGTAAAGAGGAAGAGACTTTACAAT 4333122 Query 161264 ----CATCGTCGCTGCTCATGGTTACTTCGGTCGCCTGATCTTCCAATACGCTTCCTTCA 161319 ||| || | |||||||||||| || | || ||| || |||||| ||| |||| Sbjct 4333123 AGAGCATTGTAGTTGCTCATGGTTATTTAAGCCGATTGAACTGCCAATATGCTAGTTTCA 4333182 Query 161320 ACAACTCCCGTTCGTTGCACTTCTTCCTCGCAGCATGGCCTG 161361 ||||||| ||| | || |||||| | || || ||||||| Sbjct 4333183 ACAACTCGACTTCTTGACATTTCTTCTTGGCTGCGTGGCCTG 4333224 >seq9 Length=34148863 Score = 163 bits (180), Expect = 3e-35 Identities = 188/248 (76%), Gaps = 4/248 (2%) Strand=Plus/Plus Query 160896 TGCTACATGGGTCGCGAGTGGGAACTTTCCTACCGCCTCGGCATGCGCCCCTGGATCTGC 160955 || ||||| | || |||| |||||| | | || || ||||| || ||||| ||| Sbjct 1506914 TGTTACATTGATCATGAGTATGAACTTAGTTTCTATCTGGGTATGCGTCCTTGGAT-TGC 1506972 Query 160956 -GTTGCATATTCTGCACCTGTTGCTGCTGCGAGTGCAGTATTCCTCGTCTATCCTTTCGG 161014 ||||||||||| || |||||||| ||||| | ||| || ||| | |||| ||| | || Sbjct 1506973 TGTTGCATATTCAGCTCCTGTTGCAGCTGCTACTGCTGTTTTCTTGATCTACCCTATTGG 1507032 Query 161015 TCAAGGTTCTTTCTCTGATGGTATGCCCCTGGGTATCTCTGGTACCTTCAACTTCATG-C 161073 |||||| |||||||||||||||||| | || || ||| | | |||||||||||| Sbjct 1507033 TCAAGGAAGTTTCTCTGATGGTATGCCTTTAGGAATATCTAGCA-TTTCAACTTCATGTA 1507091 Query 161074 TTGTCTTCCAGGCAGAACACAACATCCTGATGCACCCCTTCCACATGTTGGGTGTTGCTG 161133 |||| || | |||||||||||||||||| ||||| | | |||||||| ||||| ||| Sbjct 1507092 TTGTATTTCTGGCAGAACACAACATCCTTATGCATCTGGTTCACATGTTAGGTGTAACTG 1507151 Query 161134 GTGTCTTC 161141 |||| ||| Sbjct 1507152 GTGTATTC 1507159 >seq1035 Length=594915 Score = 136 bits (150), Expect = 4e-27 Identities = 240/347 (69%), Gaps = 26/347 (7%) Strand=Plus/Plus Query 164410 ATAACTGGACACTCAACCCCTTCCATATGATGGGTGTTGCAGGCATCCTTGGTGGTGCTC 164469 |||| ||||| | ||||| || |||||||||| ||| ||| | | || | ||||| Sbjct 237045 ATAATTGGACGTTGAACCCTTTGAATATGATGGGAGTTT-AGGAGTATTAGGCGCTGCTC 237103 Query 164470 TTCTCTGTGCTATTCATGGTGCTACCGTAGAGAATACTTTGTTTGAAGATGGTGAA---- 164525 | || || |||||||||||| | ||| | || ||||| || ||||||||| | Sbjct 237104 TGCTATGCGCTATTCATGGT----CTGTATAAAACACTTTATTCGAAGATGGTAACGGTG 237159 Query 164526 CAATCAAATACTTTCAAGGCATTCGAGCCTACTCAAGAGGAAGAGACTTACTCGATGGTC 164585 ||| | ||||| | || || | || ||||||| ||||||||||| || |||||| Sbjct 237160 CAAATACATACTGTTCGTGCTTTTAACCCAACTCAAGCCGAAGAGACTTATTCAATGGTC 237219 Query 164586 ACTGCCAACCGCTTCTGGTCTCAGAT-----TTTTGGTATTGCTTTCAGCAATAAGCGTT 164640 ||||| ||||| || ||||| || || ||| || ||||||| |||||| |||| Sbjct 237220 ACTGCTAACCGTTTTTGGTCCCAAATCCATCTTTAGGGGTTGCTTTTTCCAATAACCGTT 237279 Query 164641 GGTTGCACTTCTTTATGCTCTTTGTTCCTGTCATGGGACTTTGGACAAGTTCTATT--GG 164698 || | ||||| | ||||| | || | || | |||| ||| ||||| || Sbjct 237280 GG--------CCTTATGTTTTTTGTATCCGTAACAGGTTTATGGATGAGTGCTATTGGGG 237331 Query 164699 TATCA--TCGGTCTCGCACTCAATCTTCGTGCTTATGATTTTGTGTC 164743 || | ||||||| || || ||||| ||||| ||||| || || || Sbjct 237332 TAGTAAGTCGGTCTGGCTCTGAATCTACGTGCCTATGACTTCGTTTC 237378 >seq1042 Length=564079 Score = 122 bits (134), Expect = 1e-22 Identities = 100/122 (82%), Gaps = 0/122 (0%) Strand=Plus/Minus Query 161013 GGTCAAGGTTCTTTCTCTGATGGTATGCCCCTGGGTATCTCTGGTACCTTCAACTTCATG 161072 |||||||| | | || ||||||||||| | || ||||||||||| ||| |||||||| Sbjct 550860 GGTCAAGGAAGTGTTTCAGATGGTATGCCTCACGGAATCTCTGGTACTTTCCACTTCATG 550801 Query 161073 CTTGTCTTCCAGGCAGAACACAACATCCTGATGCACCCCTTCCACATGTTGGGTGTTGCT 161132 |||| |||||||| || ||||||||||| |||||||| || ||||||| ||| ||||| Sbjct 550800 ATTGTATTCCAGGCTGAGCACAACATCCTTATGCACCCATTTAACATGTTAGGTTTTGCT 550741 Query 161133 GG 161134 || Sbjct 550740 GG 550739 >seq1024 Length=717246 Score = 105 bits (116), Expect = 7e-18 Identities = 75/86 (87%), Gaps = 0/86 (0%) Strand=Plus/Plus Query 161466 AACACCTGGGCTGACGTTCTGAATCGTGCTAACCTTGGTATGGAAGTAATGCACGAGCGT 161525 ||||| |||||||| | | || ||||||||||||||||||||||||||||| || ||| Sbjct 156788 AACACTTGGGCTGATATCATCAACCGTGCTAACCTTGGTATGGAAGTAATGCATGAACGT 156847 Query 161526 AATGCTCACAACTTCCCTCTGGATCT 161551 |||||||||||||||||||| || || Sbjct 156848 AATGCTCACAACTTCCCTCTAGACCT 156873 >seq4 Length=30051516 Score = 105 bits (116), Expect = 7e-18 Identities = 120/160 (75%), Gaps = 6/160 (4%) Strand=Plus/Plus Query 161396 CACCATGGCATTCAACCTGAACGGATTCAACTTCAACCAGTCCATCATGGATGGTCAGGG 161455 ||||||||| |||||||| || || ||||| |||||||| ||| | | || ||||||| Sbjct 1282770 CACCATGGCTTTCAACCTAAATGGTTTCAATTTCAACCAATCCGTAGTTGACAGTCAGGG 1282829 Query 161456 CAAAGTCCTGAACACCTGGGCTGACGTTCTGAATCGTGCTAACCTTGGTATGG----AAG 161511 ||| | || || ||| ||| | | ||||||||| | |||||||||| ||| Sbjct 1282830 TCGTGTCATTAATAC--GGGTTGATATCATCAATCGTGCTCATCTTGGTATGGATGGAAG 1282887 Query 161512 TAATGCACGAGCGTAATGCTCACAACTTCCCTCTGGATCT 161551 |||| || || ||||||||||| ||||||||| | || || Sbjct 1282888 TAATACATGAACGTAATGCTCATAACTTCCCTTTAGACCT 1282927 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 559277247975600