Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Musa_20acuminata_20subsp._20malaccensis_20[refseq_20GCF_5F000313855.
2_202012-11-14] 7,259 sequences; 472,231,289 total letters
Query= NC_031922.1
Length=174830
Score E
Sequences producing significant alignments: (Bits) Value
seq1063 178 1e-39
seq1382 176 5e-39
seq10 174 2e-38
seq9 163 3e-35
seq1035 136 4e-27
seq1042 122 1e-22
seq1024 105 7e-18
seq4 105 7e-18
>seq1063
Length=431445
Score = 178 bits (196), Expect = 1e-39
Identities = 248/342 (73%), Gaps = 23/342 (7%)
Strand=Plus/Minus
Query 161031 GATGGTATGCCCCTGGGTATCTCTGGTACCTTCAACTTCATGCTTGTCTTCCAGGCAGAA 161090
||||||||||| | || || |||||||| ||| |||||||| |||| || | |||||||
Sbjct 54225 GATGGTATGCCTTTTGGAATATCTGGTACTTTCTACTTCATGATTGTATTACTGGCAGAA 54166
Query 161091 CACAACATCCTGATGCACCCCTTCCACATGTTGGGTGTTG--CTGGTGTCTTCGGTGGTT 161148
||||||||||| ||||| | || |||||||| ||||| | ||||||| |||||
Sbjct 54165 CACAACATCCTTATGCATCTATTTCACATGTTAGGTGTAGCTCTGGTGTATTCGG----- 54111
Query 161149 CTCT-GTTCTCCGCAATGCATGGTTCACTGGTTACTTCTTCCCTGGTTCGTGAAACCACT 161207
| || || || ||||||||||| |||| |||| | | | |||| ||||
Sbjct 54110 CCCTAGTACT-----ATGCATGGTTCCTTGGTCCACTCTTGTTTCATCAGGGAAATCACT 54056
Query 161208 GAGAACGAGTCCCAG--AACTATGGTTACAAGTTTGGTCAAGAAGAAGAGAC-CTACAA- 161263
|| ||||| ||| | | | | || || || ||| |||| |||||||| |||||
Sbjct 54055 GAAAACGAATCCGCGTTAGCAA--GTGACTGATTCGGTAAAGAGGAAGAGACTTTACAAT 53998
Query 161264 ----CATCGTCGCTGCTCATGGTTACTTCGGTCGCCTGATCTTCCAATACGCTTCCTTCA 161319
|| || |||||||||||||| || | || ||||||||||||| ||| ||||
Sbjct 53997 AGAGTATTGTAGCTGCTCATGGTTATTTAAGCCGATTGATCTTCCAATATGCTAGTTTCA 53938
Query 161320 ACAACTCCCGTTCGTTGCACTTCTTCCTCGCAGCATGGCCTG 161361
||||||| ||||| || || |||||| | || || |||||||
Sbjct 53937 ACAACTCTCGTTCTTTACATTTCTTCTTGGCTGCGTGGCCTG 53896
>seq1382
Length=172696
Score = 176 bits (194), Expect = 5e-39
Identities = 248/344 (72%), Gaps = 17/344 (5%)
Strand=Plus/Plus
Query 161089 AACACAACATCCTGATGCACCCCTTCCACATGTTGGGTGTTGCT--GGTGTCTTCGGTGG 161146
||||||||||||| ||||| || || ||||||| ||| | ||| ||||| ||||| ||
Sbjct 123495 AACACAACATCCTTATGCATCCATTGAACATGTTAGGTCTAGCTCTGGTGTATTCGGCGG 123554
Query 161147 TTCTCTGTTCTCCGCAATGCATGGTTCACTGGTTACTTCTTCCCTGGTTCGTGAAACCAC 161206
|| || ||| || ||||||||||| |||| || ||| || | | ||||||||
Sbjct 123555 CTCCCTATTCAGTGCTATGCATGGTTCCTTGGTAACCTCTAGTTTGATCAGGGAAACCAC 123614
Query 161207 TGAGAACGAGTC-CCAGAACTATGGTTACAAGTTTGGTCAAGAA----GAAGAGACCTAC 161261
||| ||||| || || | | ||||||| || ||||||||| |||||||| |||
Sbjct 123615 TGAAAACGAATCTGCATTAGCA-GGTTACAGATTCGGTCAAGAAGAAGGAAGAGACTTAC 123673
Query 161262 AA-----CATCGTCGCTGCTCATGGTTACTTCGGTCGCCTGATCTTCCAATACGCTTCCT 161316
|| || || |||||||||||||| || | || ||||| ||||||| ||| |
Sbjct 123674 AATAGAGTATTGTAGCTGCTCATGGTTATTTAAGCCGATTGATCCTCCAATATGCTAGTT 123733
Query 161317 TCAACAACTCCCG----TTCGTTGCACTTCTTCCTCGCAGCATGGCCTGTTGTCGGTATC 161372
|||||||||| || ||| | || ||| | ||||| ||||| ||| | ||||||
Sbjct 123734 TCAACAACTCTCGCTACTTCTTGACATGGATTCTTGGCAGCTTGGCCAGTTATTGGTATC 123793
Query 161373 TGGTTCACTGCACTTGGTGTCTCCACCATGGCATTCAACCTGAA 161416
||| |||| || | ||| | ||||||||| |||||||| ||
Sbjct 123794 TGGGTCACAGCTTTAGGTATTAGCACCATGGCTTTCAACCTCAA 123837
>seq10
Length=33665772
Score = 174 bits (192), Expect = 2e-38
Identities = 247/342 (72%), Gaps = 23/342 (7%)
Strand=Plus/Plus
Query 161031 GATGGTATGCCCCTGGGTATCTCTGGTACCTTCAACTTCATGCTTGTCTTCCAGGCAGAA 161090
||||||||||| | || || |||||||| |||||||||||| |||| ||||||||||||
Sbjct 4332895 GATGGTATGCCTTTAGGAATATCTGGTACTTTCAACTTCATGATTGTATTCCAGGCAGAA 4332954
Query 161091 CACAACATCCTGATGCACCCCTTCCACATGTTGGGTGTTG--CTGGTGTCTTCGGTGGTT 161148
||||||||||| ||||| | || |||||||| ||||| | ||||||| |||||
Sbjct 4332955 CACAACATCCTTATGCATCTATTTCACATGTTAGGTGTAGCTCTGGTGTATTCGG----- 4333009
Query 161149 CTCT-GTTCTCCGCAATGCATGGTTCACTGGTTACTTCTTCCCTGGTTCGTGAAACCACT 161207
| || || || ||||||||||| |||| | |||| | | | |||| ||||
Sbjct 4333010 CCCTAGTACT-----ATGCATGGTTCCTTGGTCAACTCTTGTTTCATCAGGGAAATCACT 4333064
Query 161208 GAGAACGAGTCCCAG--AACTATGGTTACAAGTTTGGTCAAGAAGAAGAGAC-CTACAA- 161263
|| ||||| ||| | | | | || || || ||| |||| |||||||| |||||
Sbjct 4333065 GAAAACGAATCCGCGTTAGCAA--GTGACTGATTCGGTAAAGAGGAAGAGACTTTACAAT 4333122
Query 161264 ----CATCGTCGCTGCTCATGGTTACTTCGGTCGCCTGATCTTCCAATACGCTTCCTTCA 161319
||| || | |||||||||||| || | || ||| || |||||| ||| ||||
Sbjct 4333123 AGAGCATTGTAGTTGCTCATGGTTATTTAAGCCGATTGAACTGCCAATATGCTAGTTTCA 4333182
Query 161320 ACAACTCCCGTTCGTTGCACTTCTTCCTCGCAGCATGGCCTG 161361
||||||| ||| | || |||||| | || || |||||||
Sbjct 4333183 ACAACTCGACTTCTTGACATTTCTTCTTGGCTGCGTGGCCTG 4333224
>seq9
Length=34148863
Score = 163 bits (180), Expect = 3e-35
Identities = 188/248 (76%), Gaps = 4/248 (2%)
Strand=Plus/Plus
Query 160896 TGCTACATGGGTCGCGAGTGGGAACTTTCCTACCGCCTCGGCATGCGCCCCTGGATCTGC 160955
|| ||||| | || |||| |||||| | | || || ||||| || ||||| |||
Sbjct 1506914 TGTTACATTGATCATGAGTATGAACTTAGTTTCTATCTGGGTATGCGTCCTTGGAT-TGC 1506972
Query 160956 -GTTGCATATTCTGCACCTGTTGCTGCTGCGAGTGCAGTATTCCTCGTCTATCCTTTCGG 161014
||||||||||| || |||||||| ||||| | ||| || ||| | |||| ||| | ||
Sbjct 1506973 TGTTGCATATTCAGCTCCTGTTGCAGCTGCTACTGCTGTTTTCTTGATCTACCCTATTGG 1507032
Query 161015 TCAAGGTTCTTTCTCTGATGGTATGCCCCTGGGTATCTCTGGTACCTTCAACTTCATG-C 161073
|||||| |||||||||||||||||| | || || ||| | | ||||||||||||
Sbjct 1507033 TCAAGGAAGTTTCTCTGATGGTATGCCTTTAGGAATATCTAGCA-TTTCAACTTCATGTA 1507091
Query 161074 TTGTCTTCCAGGCAGAACACAACATCCTGATGCACCCCTTCCACATGTTGGGTGTTGCTG 161133
|||| || | |||||||||||||||||| ||||| | | |||||||| ||||| |||
Sbjct 1507092 TTGTATTTCTGGCAGAACACAACATCCTTATGCATCTGGTTCACATGTTAGGTGTAACTG 1507151
Query 161134 GTGTCTTC 161141
|||| |||
Sbjct 1507152 GTGTATTC 1507159
>seq1035
Length=594915
Score = 136 bits (150), Expect = 4e-27
Identities = 240/347 (69%), Gaps = 26/347 (7%)
Strand=Plus/Plus
Query 164410 ATAACTGGACACTCAACCCCTTCCATATGATGGGTGTTGCAGGCATCCTTGGTGGTGCTC 164469
|||| ||||| | ||||| || |||||||||| ||| ||| | | || | |||||
Sbjct 237045 ATAATTGGACGTTGAACCCTTTGAATATGATGGGAGTTT-AGGAGTATTAGGCGCTGCTC 237103
Query 164470 TTCTCTGTGCTATTCATGGTGCTACCGTAGAGAATACTTTGTTTGAAGATGGTGAA---- 164525
| || || |||||||||||| | ||| | || ||||| || ||||||||| |
Sbjct 237104 TGCTATGCGCTATTCATGGT----CTGTATAAAACACTTTATTCGAAGATGGTAACGGTG 237159
Query 164526 CAATCAAATACTTTCAAGGCATTCGAGCCTACTCAAGAGGAAGAGACTTACTCGATGGTC 164585
||| | ||||| | || || | || ||||||| ||||||||||| || ||||||
Sbjct 237160 CAAATACATACTGTTCGTGCTTTTAACCCAACTCAAGCCGAAGAGACTTATTCAATGGTC 237219
Query 164586 ACTGCCAACCGCTTCTGGTCTCAGAT-----TTTTGGTATTGCTTTCAGCAATAAGCGTT 164640
||||| ||||| || ||||| || || ||| || ||||||| |||||| ||||
Sbjct 237220 ACTGCTAACCGTTTTTGGTCCCAAATCCATCTTTAGGGGTTGCTTTTTCCAATAACCGTT 237279
Query 164641 GGTTGCACTTCTTTATGCTCTTTGTTCCTGTCATGGGACTTTGGACAAGTTCTATT--GG 164698
|| | ||||| | ||||| | || | || | |||| ||| ||||| ||
Sbjct 237280 GG--------CCTTATGTTTTTTGTATCCGTAACAGGTTTATGGATGAGTGCTATTGGGG 237331
Query 164699 TATCA--TCGGTCTCGCACTCAATCTTCGTGCTTATGATTTTGTGTC 164743
|| | ||||||| || || ||||| ||||| ||||| || || ||
Sbjct 237332 TAGTAAGTCGGTCTGGCTCTGAATCTACGTGCCTATGACTTCGTTTC 237378
>seq1042
Length=564079
Score = 122 bits (134), Expect = 1e-22
Identities = 100/122 (82%), Gaps = 0/122 (0%)
Strand=Plus/Minus
Query 161013 GGTCAAGGTTCTTTCTCTGATGGTATGCCCCTGGGTATCTCTGGTACCTTCAACTTCATG 161072
|||||||| | | || ||||||||||| | || ||||||||||| ||| ||||||||
Sbjct 550860 GGTCAAGGAAGTGTTTCAGATGGTATGCCTCACGGAATCTCTGGTACTTTCCACTTCATG 550801
Query 161073 CTTGTCTTCCAGGCAGAACACAACATCCTGATGCACCCCTTCCACATGTTGGGTGTTGCT 161132
|||| |||||||| || ||||||||||| |||||||| || ||||||| ||| |||||
Sbjct 550800 ATTGTATTCCAGGCTGAGCACAACATCCTTATGCACCCATTTAACATGTTAGGTTTTGCT 550741
Query 161133 GG 161134
||
Sbjct 550740 GG 550739
>seq1024
Length=717246
Score = 105 bits (116), Expect = 7e-18
Identities = 75/86 (87%), Gaps = 0/86 (0%)
Strand=Plus/Plus
Query 161466 AACACCTGGGCTGACGTTCTGAATCGTGCTAACCTTGGTATGGAAGTAATGCACGAGCGT 161525
||||| |||||||| | | || ||||||||||||||||||||||||||||| || |||
Sbjct 156788 AACACTTGGGCTGATATCATCAACCGTGCTAACCTTGGTATGGAAGTAATGCATGAACGT 156847
Query 161526 AATGCTCACAACTTCCCTCTGGATCT 161551
|||||||||||||||||||| || ||
Sbjct 156848 AATGCTCACAACTTCCCTCTAGACCT 156873
>seq4
Length=30051516
Score = 105 bits (116), Expect = 7e-18
Identities = 120/160 (75%), Gaps = 6/160 (4%)
Strand=Plus/Plus
Query 161396 CACCATGGCATTCAACCTGAACGGATTCAACTTCAACCAGTCCATCATGGATGGTCAGGG 161455
||||||||| |||||||| || || ||||| |||||||| ||| | | || |||||||
Sbjct 1282770 CACCATGGCTTTCAACCTAAATGGTTTCAATTTCAACCAATCCGTAGTTGACAGTCAGGG 1282829
Query 161456 CAAAGTCCTGAACACCTGGGCTGACGTTCTGAATCGTGCTAACCTTGGTATGG----AAG 161511
||| | || || ||| ||| | | ||||||||| | |||||||||| |||
Sbjct 1282830 TCGTGTCATTAATAC--GGGTTGATATCATCAATCGTGCTCATCTTGGTATGGATGGAAG 1282887
Query 161512 TAATGCACGAGCGTAATGCTCACAACTTCCCTCTGGATCT 161551
|||| || || ||||||||||| ||||||||| | || ||
Sbjct 1282888 TAATACATGAACGTAATGCTCATAACTTCCCTTTAGACCT 1282927
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 559277247975600
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