Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Musa_20itinerans_20[genbank_20GCA_5F001649415.1_202016-05-21] 28,415 sequences; 455,349,267 total letters Query= AAMG01000538.1 Length=248 Score E Sequences producing significant alignments: (Bits) Value seq293 141 1e-31 seq1607 136 5e-30 seq597 132 7e-29 seq37 73.4 5e-11 >seq293 Length=321744 Score = 141 bits (156), Expect = 1e-31 Identities = 177/243 (73%), Gaps = 20/243 (8%) Strand=Plus/Minus Query 6 CCTTCCATCACCGGGCAGGCGTCAGTCCGTATACATCGACTTACCGTCTTCGCACGGACC 65 |||||| ||| ||||||||||||| || |||||| | ||||| | ||| || |||| Sbjct 52884 CCTTCCGGCACTGGGCAGGCGTCAGCCCCCATACATGGTCTTAC-GACTTTGCGGAGACC 52826 Query 66 TGTGTTTTTAGTAAACAGTCGCTTCCCTCTATTCTCTGCGACCACCACCAGCTCAACACG 125 ||||||||| |||||||||||| || || |||||||| || Sbjct 52825 TGTGTTTTTGGTAAACAGTCGCCCGGGCCTGGTCACTGCGACCCCCT------------- 52779 Query 126 TCGTTCACCAGCAGTGGCACCCCTTCTCCCGAAGTTACGGGGCCATTTTGCCGAATTCCT 185 | || || || ||||||||||||||||||||||||||| |||||||||| ||||| Sbjct 52778 TTGTG----AGGAG--GCACCCCTTCTCCCGAAGTTACGGGGCTATTTTGCCGAGTTCCT 52725 Query 186 TAACCACAGTTCACCCGAACGCCTTAGTATTCTCTACCTGACCACCTGTGTCGGTTTACG 245 || | |||| | || | ||| ||||||||||||| |||||||||||||||| | Sbjct 52724 TAGAGAGAGTTGTCTCGCGCCCCTAGGTATTCTCTACCTACCCACCTGTGTCGGTTTCGG 52665 Query 246 GTA 248 ||| Sbjct 52664 GTA 52662 >seq1607 Length=65845 Score = 136 bits (150), Expect = 5e-30 Identities = 179/244 (73%), Gaps = 8/244 (3%) Strand=Plus/Plus Query 6 CCTTCCATCACCGGGCAGGCGTCAGTCCGTATACATCGACTTACCGTCTTCGCACGGACC 65 ||||||| ||||||||||| ||||| | ||||||||| ||||| ||| ||| | || Sbjct 10185 CCTTCCAGCACCGGGCAGGTGTCAGACTCTATACATCGTGTTACCA-CTTAGCAGAGTCC 10243 Query 66 TGTGTTTTTAGTAAACAGTCGCTTCCCTCTATTCTCTGCGACCACCACCAGCTCAACACG 125 |||||||||| |||||||||||| ||| || | | ||| || | | ||| | Sbjct 10244 TGTGTTTTTAATAAACAGTCGCTACCCCCTGGTATGTGCCACTTTCCTAA--TCATAGTG 10301 Query 126 TCGTTCACCAGCAGTGGCACCCCTTCTCCCGAAGTTACGGGGCCATTTTGCCGAATTCCT 185 || | || |||||||||||||||||||||||||| ||||||||||| ||||| Sbjct 10302 AGATTTAGGAGA----GCACCCCTTCTCCCGAAGTTACGGGGTCATTTTGCCGAGTTCCT 10357 Query 186 TAACCACAGTTCACCCGA-ACGCCTTAGTATTCTCTACCTGACCACCTGTGTCGGTTTAC 244 | || |||| | ||| |||| ||||| || ||| || |||||||||||||| Sbjct 10358 TCGACATGGTTCTCTCGACGCGCCCTAGTAGACTATACTTGTGAACCTGTGTCGGTTTGG 10417 Query 245 GGTA 248 |||| Sbjct 10418 GGTA 10421 >seq597 Length=183504 Score = 132 bits (146), Expect = 7e-29 Identities = 177/248 (71%), Gaps = 20/248 (8%) Strand=Plus/Plus Query 1 CTTATCCTTCCATCACCGGGCAGGCGTCAGTCCGTATACATCGACTTACCGTCTTCGCAC 60 |||| |||||| ||| |||| |||||| || | |||| | ||||| | ||| || Sbjct 130816 CTTAACCTTCCGGCACTAGGCAAACGTCAGCCCCCACACATGGTCTTAC-GACTTTGCGG 130874 Query 61 GGACCTGTGTTTTTAGTAAACAGTCGCTTCCCTCTATTCTCTGCGACCACCACCAGCTCA 120 ||||||||||||| |||||||||||||| || || || ||||| || Sbjct 130875 AGACCTGTGTTTTTGGTAAACAGTCGCTTGGGCCTGGTCACTACGACCCCC--------- 130925 Query 121 ACACGTCGTTCACCAGCAGTGGCACCCCTTCTCCCGAAGTTACGGGGCCATTTTGCCGAA 180 || || || ||||||||||||||||||||||||||| |||||||||| Sbjct 130926 --------TTTTTGAGGAG--GCACCCCTTCTCCCGAAGTTACGGGGCTATTTTGCCGAG 130975 Query 181 TTCCTTAACCACAGTTCACCCGAACGCCTTAGTATTCTCTACCTGACCACCTGTGTCGGT 240 ||||||| | |||| | || | ||| ||||||||||||| |||||||||||||| Sbjct 130976 TTCCTTAGAGAGAGTTGTCTCGCGCCCCTAGGTATTCTCTACCTACCCACCTGTGTCGGT 131035 Query 241 TTACGGTA 248 || |||| Sbjct 131036 TTCGGGTA 131043 >seq37 Length=819315 Score = 73.4 bits (80), Expect = 5e-11 Identities = 78/102 (76%), Gaps = 1/102 (1%) Strand=Plus/Minus Query 141 GGCACCCCTTCTCCCGAAGTTACGGGGCCATTTTGCCGAATTCCTTAACCACAGTTCACC 200 ||||||||||||||||| |||| ||||| |||||| || |||||| | | |||| | Sbjct 160273 GGCACCCCTTCTCCCGAGGTTAAGGGGCTATTTTGTTGAGTTCCTT-AGAAGAGTTGTCT 160215 Query 201 CGAACGCCTTAGTATTCTCTACCTGACCACCTGTGTCGGTTT 242 | | ||| | ||| ||||||| |||||| ||||||||| Sbjct 160214 CATGCCCCTAGGAATTGTCTACCTACCCACCTATGTCGGTTT 160173 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 694208852295