Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Musa_20itinerans_20[genbank_20GCA_5F001649415.1_202016-05-21] 28,415 sequences; 455,349,267 total letters Query= AAMG01000636.1 Length=426 Score E Sequences producing significant alignments: (Bits) Value seq293 246 8e-63 seq1607 233 5e-59 seq597 230 6e-58 seq3198 118 3e-24 seq3 107 5e-21 seq511 89.7 1e-15 seq425 84.2 6e-14 seq32 80.6 7e-13 >seq293 Length=321744 Score = 246 bits (272), Expect = 8e-63 Identities = 279/378 (74%), Gaps = 27/378 (7%) Strand=Plus/Minus Query 53 GAGACAGCGCCGCCATCGTTACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATT 112 ||||||| ||| ||||||||||| ||||||| |||||||||||||||||||||||||| Sbjct 53034 GAGACAGTGCCCAGATCGTTACGCCTTTCGTGCGGGTCGGAACTTACCCGACAAGGAATT 52975 Query 113 TCGCTACCTTAGGACCGTTATTGTTACGGCCGCCGTTTACCGGGGCTTCGATCAAGAGCT 172 ||||||||||||||||||||| ||||||||||||||| |||||||||||| || ||| Sbjct 52974 TCGCTACCTTAGGACCGTTATAGTTACGGCCGCCGTTCACCGGGGCTTCGGTCGCCGGCT 52915 Query 173 ----TCGCGTTAGCTAACCCCATCAATTAACCTTCCGGCACCGGGCAGGCGTCACACCCT 228 | | | || | ||| | || |||||||||||| |||||||||||| ||| Sbjct 52914 CCCCTGTCATCAGGTCACCAACTTCCTTGACCTTCCGGCACTGGGCAGGCGTCAGCCCCC 52855 Query 229 ATACGTCCACTTTCGTGTTTGCAGAGTGCTGTGTTTTTAATAAACAGTCGCAGCGGCCTG 288 |||| | ||| || ||||| ||| |||||||||| ||||||||||| |||||| Sbjct 52854 ATACATGGTCTTACGACTTTGCGGAGACCTGTGTTTTTGGTAAACAGTCGCCCGGGCCTG 52795 Query 289 GTATCTTCGACCGGCATGAGCTTACGGAGCAAGTCCTTCACCCTCACCGGCGCACCTTCT 348 || || ||||| ||| ||| | ||| | |||||| Sbjct 52794 GTCACTGCGACC------CCCTTTGTGAGGA-----------------GGCACCCCTTCT 52758 Query 349 CCCGAAGTTACGGTGCCTTTTTGCCTAGTTCCTTCCCCCGAGTTCTCTCAAGCGCCTTGG 408 ||||||||||||| || ||||||| |||||||| ||||| |||| || ||| || Sbjct 52757 CCCGAAGTTACGGGGCTATTTTGCCGAGTTCCTTAGAGAGAGTTGTCTCGCGCCCCTAGG 52698 Query 409 TATTCTCTACCCAACCAC 426 ||||||||||| | |||| Sbjct 52697 TATTCTCTACCTACCCAC 52680 >seq1607 Length=65845 Score = 233 bits (258), Expect = 5e-59 Identities = 300/413 (73%), Gaps = 17/413 (4%) Strand=Plus/Plus Query 7 TACACTGCATCTTCACAGCGATTTCAATTTCACTGAGTCTCGGGTGGAGACAGCGCCGCC 66 ||| | |||||||||| | || ||| ||||||| | ||| | |||||||||| || Sbjct 9999 TACTCCGCATCTTCACGGAGAATTCCATTTCACCGGGTCCATGTCGGAGACAGCGGGGCA 10058 Query 67 ATCGTTACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGA 126 ||||||| |||||||||||||||| ||||| |||||||||||||||||||||||||| Sbjct 10059 GTCGTTACACCATTCGTGCAGGTCGCTACTTATGCGACAAGGAATTTCGCTACCTTAGGA 10118 Query 127 CCGTTATTGTTACGGCCGCCGTTTACCGGGGCTTCGATCAAGAGCTTCGCGTTAGCTAAC 186 | |||| ||||| ||||||||||||| ||||||| || | ||||| | | ||| Sbjct 10119 CAGTTAGAGTTACTGCCGCCGTTTACCAGGGCTTCCATTCAAAGCTT------ATCAAAC 10172 Query 187 CCCATCAATTAACCTTCCGGCACCGGGCAGGCGTCACACCCTATACGTCCACTTTCGTGT 246 || ||||||| |||||||||||| |||| || |||||| || || | | Sbjct 10173 TTTGTCTTCCGACCTTCCAGCACCGGGCAGGTGTCAGACTCTATACATCGTGTTACCACT 10232 Query 247 TTGCAGAGTGCTGTGTTTTTAATAAACAGTCGCAGCGGCCTGGTATCTTCGACCGGCATG 306 | ||||||| ||||||||||||||||||||||| | |||||||| | | || | | Sbjct 10233 TAGCAGAGTCCTGTGTTTTTAATAAACAGTCGCTACCCCCTGGTATGTGCCACTTTCCTA 10292 Query 307 AGCTTACGGAGCAAGTCCTTCACCCTCACCGGCGCACCTTCTCCCGAAGTTACGGTGCCT 366 | | || ||| || | || | ||||||||||||||||||| | | Sbjct 10293 ATCATAGTGAG------ATTTA----GGAGAGCACCCCTTCTCCCGAAGTTACGGGGTCA 10342 Query 367 TTTTGCCTAGTTCCTTCCCCCGAGTTCTCTC-AAGCGCCTTGGTATTCTCTAC 418 ||||||| ||||||||| | |||||||| | ||||| | ||| || ||| Sbjct 10343 TTTTGCCGAGTTCCTTCGACATGGTTCTCTCGACGCGCCCTAGTAGACTATAC 10395 >seq597 Length=183504 Score = 230 bits (254), Expect = 6e-58 Identities = 307/429 (72%), Gaps = 27/429 (6%) Strand=Plus/Plus Query 2 GCGGATACACTGCATCTTCACAGCGATTTCAATTTCACTGAGTCTCGGGTGGAGACAGCG 61 |||| || | |||||||||||| || || ||||||| ||| ||| ||||||| | Sbjct 130620 GCGGGTAGTCCGCATCTTCACAGACATGTCTATTTCACCGAGCCTCTCTCCGAGACAGTG 130679 Query 62 CCGCCATCGTTACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCT 121 || ||| ||||||| |||||| ||||||||||||||||||||||||||||||||||| Sbjct 130680 CCCAGATCATTACGCCTTTCGTGTGGGTCGGAACTTACCCGACAAGGAATTTCGCTACCT 130739 Query 122 TAGGACCGTTATTGTTACGGCCGCCGTTTACCGGGGCTTCGATCAAGAGCTTCGC-GTTA 180 ||||||| ||| ||||||| ||||||| | ||| ||||||||| ||| | | || | Sbjct 130740 TAGGACCATTAAAGTTACGGTCGCCGTTCATCGGAGCTTCGATCGTCGGCTCCCCTGTCA 130799 Query 181 GC---TAACCCCATCAATTAACCTTCCGGCACCGGGCAGGCGTCACACCCTATACGTCCA 237 | | ||| | ||||||||||||||| |||| ||||| ||| | || | Sbjct 130800 TCAAGTCACCAACTTCCTTAACCTTCCGGCACTAGGCAAACGTCAGCCCCCACACATGGT 130859 Query 238 CTTTCGTGTTTGCAGAGTGCTGTGTTTTTAATAAACAGTCGCAGCGGCCTGGTATCTTCG 297 ||| || ||||| ||| |||||||||| ||||||||||| |||||||| || || Sbjct 130860 CTTACGACTTTGCGGAGACCTGTGTTTTTGGTAAACAGTCGCTTGGGCCTGGTCACTACG 130919 Query 298 ACCGGCATGAGCTTACGGAGCAAGTCCTTCACCCTCACCGGCGCACCTTCTCCCGAAGTT 357 ||| | | || ||| ||| | ||||||||||||||| Sbjct 130920 ACCCCCTT---TTTGAGGA--------------------GGCACCCCTTCTCCCGAAGTT 130956 Query 358 ACGGTGCCTTTTTGCCTAGTTCCTTCCCCCGAGTTCTCTCAAGCGCCTTGGTATTCTCTA 417 |||| || ||||||| |||||||| ||||| |||| || ||| ||||||||||| Sbjct 130957 ACGGGGCTATTTTGCCGAGTTCCTTAGAGAGAGTTGTCTCGCGCCCCTAGGTATTCTCTA 131016 Query 418 CCCAACCAC 426 || | |||| Sbjct 131017 CCTACCCAC 131025 >seq3198 Length=23341 Score = 118 bits (130), Expect = 3e-24 Identities = 110/138 (80%), Gaps = 4/138 (3%) Strand=Plus/Minus Query 89 TCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTATTGTTACGGCCGCCGT 148 |||||||||||| ||||||||||||| |||||||||||||||||| |||||||||||||| Sbjct 18343 TCGGAACTTACCGGACAAGGAATTTCACTACCTTAGGACCGTTATAGTTACGGCCGCCGT 18284 Query 149 TTACCGGGGCTTCGAT---CAA-GAGCTTCGCGTTAGCTAACCCCATCAATTAACCTTCC 204 | |||||||||||| | ||| | | | | || | || | || ||||||| Sbjct 18283 TCACCGGGGCTTCGGTTGCCAACTCCCCTGTCATCAGGTCACTAACTTCCTTGACCTTCC 18224 Query 205 GGCACCGGGCAGGCGTCA 222 ||||| |||||||||||| Sbjct 18223 GGCACTGGGCAGGCGTCA 18206 >seq3 Length=1478877 Score = 107 bits (118), Expect = 5e-21 Identities = 116/154 (75%), Gaps = 0/154 (0%) Strand=Plus/Minus Query 12 TGCATCTTCACAGCGATTTCAATTTCACTGAGTCTCGGGTGGAGACAGCGCCGCCATCGT 71 |||||||||||| || || ||||||| || ||| | |||| || || ||||| Sbjct 763630 TGCATCTTCACATATATGTCTATTTCACCAAGCCTCTCTTCGAGATAGTACCCAGATCGT 763571 Query 72 TACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTT 131 |||| | || ||| |||||| ||||||||| | ||| ||||||||||||||| || ||| Sbjct 763570 TACGTCTTTTGTGTAGGTCGAAACTTACCCAATAAGAAATTTCGCTACCTTATGATTGTT 763511 Query 132 ATTGTTACGGCCGCCGTTTACCGGGGCTTCGATC 165 || |||| | | | || | ||||||||||||| Sbjct 763510 ATAGTTATCGTTGTCATTCATCGGGGCTTCGATC 763477 >seq511 Length=212602 Score = 89.7 bits (98), Expect = 1e-15 Identities = 79/99 (80%), Gaps = 0/99 (0%) Strand=Plus/Plus Query 67 ATCGTTACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGA 126 ||| ||||||| ||||||||||||||| ||||||||| || || | |||||||| |||| Sbjct 58757 ATCATTACGCCTTTCGTGCAGGTCGGACCTTACCCGAAAAAGAGTACCGCTACCTAAGGA 58816 Query 127 CCGTTATTGTTACGGCCGCCGTTTACCGGGGCTTCGATC 165 || || ||| || || || || |||| |||||| ||| Sbjct 58817 CCACTAAAGTTGCGACCACCATTCACCGAGGCTTCAATC 58855 >seq425 Length=244189 Score = 84.2 bits (92), Expect = 6e-14 Identities = 72/89 (81%), Gaps = 0/89 (0%) Strand=Plus/Plus Query 13 GCATCTTCACAGCGATTTCAATTTCACTGAGTCTCGGGTGGAGACAGCGCCGCCATCGTT 72 |||||||||||| || || ||||||| ||| ||| ||||||| ||| |||||| Sbjct 209632 GCATCTTCACAGACATGTCTATTTCACCGAGCCTCTCTCCGAGACAGTGCCCAGATCGTT 209691 Query 73 ACGCCATTCGTGCAGGTCGGAACTTACCC 101 ||||| ||||||| ||||||||||||||| Sbjct 209692 ACGCCTTTCGTGCGGGTCGGAACTTACCC 209720 >seq32 Length=867475 Score = 80.6 bits (88), Expect = 7e-13 Identities = 110/154 (71%), Gaps = 0/154 (0%) Strand=Plus/Minus Query 12 TGCATCTTCACAGCGATTTCAATTTCACTGAGTCTCGGGTGGAGACAGCGCCGCCATCGT 71 |||||||||||| || || |||||| ||| || | |||| || || ||| | Sbjct 647574 TGCATCTTCACAAACATGTCTATTTCATTGAACCTTGCTCTGAGAAAGTACCCAGATCAT 647515 Query 72 TACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTT 131 || || ||||| | ||| || ||||||||||| |||||| |||| ||||||||| || Sbjct 647514 TATGCTTTTCGTATGGATCGAAATTTACCCGACAAAGAATTTTGCTATCTTAGGACCATT 647455 Query 132 ATTGTTACGGCCGCCGTTTACCGGGGCTTCGATC 165 || ||| || | || ||| |||||||| || Sbjct 647454 ATACTTATGGTTACTATTCACCCGGGCTTCGGTC 647421 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1260441743680