Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Musa_20itinerans_20[genbank_20GCA_5F001649415.1_202016-05-21] 28,415 sequences; 455,349,267 total letters Query= AAMG01000753.1 Length=364 Score E Sequences producing significant alignments: (Bits) Value seq293 320 4e-85 seq597 293 5e-77 seq1607 241 3e-61 seq3 158 3e-36 seq3198 122 2e-25 seq425 102 2e-19 seq511 100 6e-19 seq37 100 6e-19 seq32 91.5 3e-16 seq294 87.8 4e-15 seq170 80.6 6e-13 seq1788 75.2 2e-11 seq23786 73.4 8e-11 >seq293 Length=321744 Score = 320 bits (354), Expect = 4e-85 Identities = 261/313 (83%), Gaps = 8/313 (3%) Strand=Plus/Minus Query 47 GAGACAGTGCCCAAATCGTTACGCCTTTCGTGCGGGTCGGAACTTACCCGACAAGGAATT 106 ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 53034 GAGACAGTGCCCAGATCGTTACGCCTTTCGTGCGGGTCGGAACTTACCCGACAAGGAATT 52975 Query 107 TCGCTACCTTAGGACCGTTATAGTTACGGCCGCCGTTTACTGGGGCTTAAGTTCACTGCT 166 ||||||||||||||||||||||||||||||||||||| || ||||||| || | ||| Sbjct 52974 TCGCTACCTTAGGACCGTTATAGTTACGGCCGCCGTTCACCGGGGCTTCGGTCGCCGGCT 52915 Query 167 TCGAT-TGCTC---TAACAGATCCCCTTAACCTTCCAGCACCGGGCAGGCGTCAGCTCCT 222 | | | || | || | |||| ||||||| |||| |||||||||||||| || Sbjct 52914 CCCCTGTCATCAGGTCACCAACTTCCTTGACCTTCCGGCACTGGGCAGGCGTCAGCCCCC 52855 Query 223 ATACATCGTCTTGCGACTTAGCAGAAACCTGTGTTTTTGGTAAACAGTCGCTTGGGCCTA 282 |||||| ||||| |||||| || || ||||||||||||||||||||||||| |||||| Sbjct 52854 ATACATGGTCTTACGACTTTGCGGAGACCTGTGTTTTTGGTAAACAGTCGCCCGGGCCTG 52795 Query 283 TTCTCTGCG---GCCTGTCATAGACAGGCACCCCTTCTCCCTAAGTTACGGGGTCATTTT 339 || ||||| ||| | || |||||||||||||||| ||||||||||| ||||| Sbjct 52794 GTCACTGCGACCCCCTTTGTGAG-GAGGCACCCCTTCTCCCGAAGTTACGGGGCTATTTT 52736 Query 340 GCCGAGTTCCTTA 352 ||||||||||||| Sbjct 52735 GCCGAGTTCCTTA 52723 >seq597 Length=183504 Score = 293 bits (324), Expect = 5e-77 Identities = 279/352 (79%), Gaps = 6/352 (2%) Strand=Plus/Plus Query 7 GCATCTTCACCGGGATTACAATTTCACCGAGTCTATTGTTGAGACAGTGCCCAAATCGTT 66 |||||||||| | || | ||||||||||| || | ||||||||||||| ||| || Sbjct 130631 GCATCTTCACAGACATGTCTATTTCACCGAGCCTCTCTCCGAGACAGTGCCCAGATCATT 130690 Query 67 ACGCCTTTCGTGCGGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTA 126 |||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||| Sbjct 130691 ACGCCTTTCGTGTGGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCATTA 130750 Query 127 TAGTTACGGCCGCCGTTTACTGGGGCTTAAGTTCACTGCTTCGAT-TGCTC---TAACAG 182 |||||||| ||||||| | || |||| | | ||| | | | || | || Sbjct 130751 AAGTTACGGTCGCCGTTCATCGGAGCTTCGATCGTCGGCTCCCCTGTCATCAAGTCACCA 130810 Query 183 ATCCCCTTAACCTTCCAGCACCGGGCAGGCGTCAGCTCCTATACATCGTCTTGCGACTTA 242 | |||||||||||| |||| |||| ||||||| || | |||| ||||| |||||| Sbjct 130811 ACTTCCTTAACCTTCCGGCACTAGGCAAACGTCAGCCCCCACACATGGTCTTACGACTTT 130870 Query 243 GCAGAAACCTGTGTTTTTGGTAAACAGTCGCTTGGGCCTATTCTCTGCG-GCCTGTCATA 301 || || ||||||||||||||||||||||||||||||||| || || || || | | Sbjct 130871 GCGGAGACCTGTGTTTTTGGTAAACAGTCGCTTGGGCCTGGTCACTACGACCCCCTTTTT 130930 Query 302 GA-CAGGCACCCCTTCTCCCTAAGTTACGGGGTCATTTTGCCGAGTTCCTTA 352 || |||||||||||||||| ||||||||||| |||||||||||||||||| Sbjct 130931 GAGGAGGCACCCCTTCTCCCGAAGTTACGGGGCTATTTTGCCGAGTTCCTTA 130982 >seq1607 Length=65845 Score = 241 bits (266), Expect = 3e-61 Identities = 282/381 (74%), Gaps = 25/381 (7%) Strand=Plus/Plus Query 1 TACCCGGCATCTTCACCGGGATTACAATTTCACCGAGTCTATTGTTGAGACAGTGCCCAA 60 ||| | |||||||||| | || | | ||||||||| ||| || ||||||| | | Sbjct 9999 TACTCCGCATCTTCACGGAGAATTCCATTTCACCGGGTCCATGTCGGAGACAGCGGGGCA 10058 Query 61 ATCGTTACGCCTTTCGTGCGGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGA 120 ||||||| || ||||||| ||||| ||||| |||||||||||||||||||||||||| Sbjct 10059 GTCGTTACACCATTCGTGCAGGTCGCTACTTATGCGACAAGGAATTTCGCTACCTTAGGA 10118 Query 121 CCGTTATAGTTACGGCCGCCGTTTACTGGGGCTTAAGTTCACTGCTTCGATTGCTCTAAC 180 | |||| |||||| |||||||||||| |||||| |||| |||| || ||| Sbjct 10119 CAGTTAGAGTTACTGCCGCCGTTTACCAGGGCTTCCATTCAAAGCTT------ATCAAAC 10172 Query 181 AGATCCCCTT--AACCTTCCAGCACCGGGCAGGCGTCAGCTCCTATACATCGTCTTGCGA 238 | ||| |||||||||||||||||||| ||||| ||||||||||| || | | Sbjct 10173 --TTTGTCTTCCGACCTTCCAGCACCGGGCAGGTGTCAGACTCTATACATCGTGTTACCA 10230 Query 239 CTTAGCAGAAACCTGTGTTTTTGGTAAACAGTCGCTTGGGCCTATTCTCTGCGGCCT--- 295 ||||||||| ||||||||||| |||||||||||| ||| | | ||| | | Sbjct 10231 CTTAGCAGAGTCCTGTGTTTTTAATAAACAGTCGCTACCCCCTGGTATGTGCCACTTTCC 10290 Query 296 --GTCATAGACAG----------GCACCCCTTCTCCCTAAGTTACGGGGTCATTTTGCCG 343 |||||| || |||||||||||||| |||||||||||||||||||||| Sbjct 10291 TAATCATAGTGAGATTTAGGAGAGCACCCCTTCTCCCGAAGTTACGGGGTCATTTTGCCG 10350 Query 344 AGTTCCTTAACAATAGTTCTC 364 |||||||| || |||||| Sbjct 10351 AGTTCCTTCGACATGGTTCTC 10371 >seq3 Length=1478877 Score = 158 bits (174), Expect = 3e-36 Identities = 251/357 (70%), Gaps = 16/357 (4%) Strand=Plus/Minus Query 7 GCATCTTCACCGGGATTACAATTTCACCGAGTCTATTGTTGAGACAGTGCCCAAATCGTT 66 |||||||||| || | |||||||| || || | | |||| ||| |||| |||||| Sbjct 763629 GCATCTTCACATATATGTCTATTTCACCAAGCCTCTCTTCGAGATAGTACCCAGATCGTT 763570 Query 67 ACGCCTTTCGTGCGGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTA 126 ||| |||| ||| ||||| ||||||||| | ||| ||||||||||||||| || |||| Sbjct 763569 ACGTCTTTTGTGTAGGTCGAAACTTACCCAATAAGAAATTTCGCTACCTTATGATTGTTA 763510 Query 127 TAGTTACGGCCGCCGTTTACTGGGGCTT-------AAGTTCAC--TGCTTCGATTGCTCT 177 |||||| | | | || | ||||||| ||||| | | || | | | || Sbjct 763509 TAGTTATCGTTGTCATTCATCGGGGCTTCGATCGCCAGTTCCCCTATCATCAAGT-CACT 763451 Query 178 AACAGATCCCCTTAACCTTCCAGCACCGGGCAGGCGTCAGCTCCTATACATCGTCTTGCG 237 ||| |||||||||||| | | || |||||||||| | |||||| || || | Sbjct 763450 AAC----TTCCTTAACCTTCCGGTATTGGATAGGCGTCAGCCCTCATACATGGTTTTACA 763395 Query 238 ACTTAGCAGAAACCTGTGTTTTTGGTAAACAGTCGCTTGGGCCTATTCTCTGCG--GCCT 295 |||| | | |||| |||||||||||| ||||| ||||| || || || || ||| Sbjct 763394 ACTTTGTGAAGACCTATGTTTTTGGTAACCAGTCACTTGGCTCTTGTCACTACGACTCCT 763335 Query 296 GTCATAGACAGGCACCCCTTCTCCCTAAGTTACGGGGTCATTTTGCCGAGTTCCTTA 352 | || |||||||| || || | |||||| ||| |||||| |||||| |||| Sbjct 763334 TTTATGAGGAGGCACCCATTATCTCAAAGTTATAGGGCTATTTTGTCGAGTTTCTTA 763278 >seq3198 Length=23341 Score = 122 bits (134), Expect = 2e-25 Identities = 112/140 (80%), Gaps = 4/140 (3%) Strand=Plus/Minus Query 83 TCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTATAGTTACGGCCGCCGT 142 |||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||| Sbjct 18343 TCGGAACTTACCGGACAAGGAATTTCACTACCTTAGGACCGTTATAGTTACGGCCGCCGT 18284 Query 143 TTACTGGGGCTTAAGTTCACTGCTTCGAT-TGCTC---TAACAGATCCCCTTAACCTTCC 198 | || ||||||| ||| | || | | | || | || | |||| ||||||| Sbjct 18283 TCACCGGGGCTTCGGTTGCCAACTCCCCTGTCATCAGGTCACTAACTTCCTTGACCTTCC 18224 Query 199 AGCACCGGGCAGGCGTCAGC 218 |||| |||||||||||||| Sbjct 18223 GGCACTGGGCAGGCGTCAGC 18204 >seq425 Length=244189 Score = 102 bits (112), Expect = 2e-19 Identities = 76/89 (85%), Gaps = 0/89 (0%) Strand=Plus/Plus Query 7 GCATCTTCACCGGGATTACAATTTCACCGAGTCTATTGTTGAGACAGTGCCCAAATCGTT 66 |||||||||| | || | ||||||||||| || | ||||||||||||| |||||| Sbjct 209632 GCATCTTCACAGACATGTCTATTTCACCGAGCCTCTCTCCGAGACAGTGCCCAGATCGTT 209691 Query 67 ACGCCTTTCGTGCGGGTCGGAACTTACCC 95 ||||||||||||||||||||||||||||| Sbjct 209692 ACGCCTTTCGTGCGGGTCGGAACTTACCC 209720 >seq511 Length=212602 Score = 100 bits (110), Expect = 6e-19 Identities = 99/128 (77%), Gaps = 4/128 (3%) Strand=Plus/Plus Query 27 ATTTCACCGAGTCTATTGTTGAGACAGTGCCCAAATCGTTACGCCTTTCGTGCGGGTCGG 86 ||||||||||| || || ||| || |||| ||| ||||||||||||||| |||||| Sbjct 58727 ATTTCACCGAGCCTCTT----AGATGGTTCCCAGATCATTACGCCTTTCGTGCAGGTCGG 58782 Query 87 AACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTATAGTTACGGCCGCCGTTTAC 146 | ||||||||| || || | |||||||| |||||| || |||| || || || || || Sbjct 58783 ACCTTACCCGAAAAAGAGTACCGCTACCTAAGGACCACTAAAGTTGCGACCACCATTCAC 58842 Query 147 TGGGGCTT 154 | ||||| Sbjct 58843 CGAGGCTT 58850 Score = 75.2 bits (82), Expect = 2e-11 Identities = 90/120 (75%), Gaps = 3/120 (3%) Strand=Plus/Plus Query 215 CAGCTCCTATACATCGTCTTGCGACTTAGCAGAAACCTGTGTTTTTGGTAAACAGTCGCT 274 |||| || |||||| | ||| |||||| ||| | |||| |||||||||||| || |||| Sbjct 58865 CAGCCCCCATACATGGCCTTACGACTTGGCAAAGACCTATGTTTTTGGTAACCAATCGCC 58924 Query 275 TGGGCCTATT--CTCTGCGGCCTGTCATAGACAGGCACCCCTTCTCCCTAAGTTACGGGG 332 | |||| | |||| | ||| | || |||||| ||||| ||| ||||||||||| Sbjct 58925 CGAGCCTGGTCACTCTACCCCCTTTGTGAG-GAGGCACACCTTCCCCCAAAGTTACGGGG 58983 >seq37 Length=819315 Score = 100 bits (110), Expect = 6e-19 Identities = 207/310 (67%), Gaps = 41/310 (13%) Strand=Plus/Minus Query 47 GAGACAGTGCCCAAATCGTTACGCCTTTCGTGCGGGTCGGAACTTACCCGACAAGGAATT 106 |||||| || ||| || |||| |||||| ||| || || ||||| || |||||||| Sbjct 160499 GAGACAATGTCCAGATTGTTAAGCCTTTTGTGTGGATCATAACTT----GATAAGGAATT 160444 Query 107 TCGCTACCTTAGGACCGTTATAGTTACGGCCGCCGTTTACTGGGGCTTAAGTTCACTGCT 166 ||| ||||||||||| |||||||| | |||| || ||| ||| ||| Sbjct 160443 TCGATACCTTAGGACTATTATAGTTGCAATCGCCCTTCACTAAGGC--------ACT--- 160395 Query 167 TCGATTGCTCTAACAGATCCCCTTAACCTTCCA--GCACCGGGCAGGCGTCAGCTCCTAT 224 ||||| | |||||| |||| || | ||||| || || Sbjct 160394 -------------------CCCTTGATCTTCCATGGCACTAGGACAACATCAGCCCCAAT 160354 Query 225 ACATCGTCTTGCGACTTAGCAGAAACCTGTGTTTTTGGTAAACAGTCGCTTGGGCCTATT 284 | || |||| ||||| ||| |||||| |||||||||||| || | |||||||| | Sbjct 160353 ATATGGTCT---GACTTTGCAACGACCTGTCCTTTTGGTAAACAATCACCTGGGCCTAGT 160297 Query 285 CTCTGCGGCCTG-TC-ATAGACAGGCACCCCTTCTCCCTAAGTTACGGGGTCATTTTGCC 342 | | | || || ||| |||||||||||||||| | |||| |||| |||||| Sbjct 160296 CATTACAACCCCCTCTATAAGGAGGCACCCCTTCTCCCGAGGTTAAGGGGCTATTTTGTT 160237 Query 343 GAGTTCCTTA 352 |||||||||| Sbjct 160236 GAGTTCCTTA 160227 >seq32 Length=867475 Score = 91.5 bits (100), Expect = 3e-16 Identities = 155/224 (69%), Gaps = 17/224 (8%) Strand=Plus/Minus Query 46 TGAGACAGTGCCCAAATCGTTACGCCTTTCGTGCGGGTCGGAACTTACCCGACAAGGAAT 105 ||||| ||| |||| ||| ||| || |||||| || ||| || ||||||||||| |||| Sbjct 647534 TGAGAAAGTACCCAGATCATTATGCTTTTCGTATGGATCGAAATTTACCCGACAAAGAAT 647475 Query 106 TTCGCTACCTTAGGACCGTTATAGTTACGGCCGCCGTTTACTGGGGCTTAAGTTCACTGC 165 || |||| ||||||||| ||||| ||| || | || || |||||| || | Sbjct 647474 TTTGCTATCTTAGGACCATTATACTTATGGTTACTATTCACCCGGGCTTCGGT------C 647421 Query 166 TTCGATTGCTCT---AACAGATC-------CCCTTAACCTTCCAGCACCGGGCAGGCGTC 215 |||| | | || | ||| || | || ||||||||| || ||| || || Sbjct 647420 GTCGACTCCCCTATCATCAGGTCACTAACTTCTTTGACCTTCCAGTACTAAGCAAGCATC 647361 Query 216 AGCTCCTATACATCGTCTTGCGACTTAGCAGAAACCTGTGTTTT 259 | | || |||||| ||||| |||||| || || || | | |||| Sbjct 647360 AAC-CCCATACATGGTCTTACGACTTTGCGGAGACATATTTTTT 647318 >seq294 Length=321605 Score = 87.8 bits (96), Expect = 4e-15 Identities = 87/112 (78%), Gaps = 2/112 (2%) Strand=Plus/Minus Query 37 GTCTATTGTT--GAGACAGTGCCCAAATCGTTACGCCTTTCGTGCGGGTCGGAACTTACC 94 ||||||| || |||| |||||||| || |||| | | ||| || | || | |||||| | Sbjct 167436 GTCTATTTTTCTGAGATAGTGCCCATATTGTTATGTCCTTCATGTGAGTTGAAACTTATC 167377 Query 95 CGACAAGGAATTTCGCTACCTTAGGACCGTTATAGTTACGGCCGCCGTTTAC 146 || ||| ||||| |||||||||||||| |||||||||| || |||| || Sbjct 167376 TGATAAGAAATTTTGCTACCTTAGGACCATTATAGTTACAATCGTCGTTCAC 167325 >seq170 Length=449425 Score = 80.6 bits (88), Expect = 6e-13 Identities = 82/107 (77%), Gaps = 0/107 (0%) Strand=Plus/Minus Query 27 ATTTCACCGAGTCTATTGTTGAGACAGTGCCCAAATCGTTACGCCTTTCGTGCGGGTCGG 86 |||||| ||| || | |||||| |||| || |||||||||| |||| || | || | Sbjct 291313 ATTTCAATGAGCCTCTCTTTGAGATAGTGTTCAGATCGTTACGCTTTTCATGTGAGTTGA 291254 Query 87 AACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTATAGTTAC 133 ||||||||| ||||| | || |||| | ||||| ||||||||||| Sbjct 291253 AACTTACCCAACAAGAAGTTGTGCTATCATAGGATTGTTATAGTTAC 291207 >seq1788 Length=56823 Score = 75.2 bits (82), Expect = 2e-11 Identities = 55/63 (87%), Gaps = 1/63 (2%) Strand=Plus/Plus Query 61 ATCGTTACGCCTTTCGTGCGGGTCGGAACTTACCCGAC-AAGGAATTTCGCTACCTTAGG 119 |||||| |||||||||||||||| |||||||| ||| ||| |||||||||| |||||| Sbjct 50751 ATCGTTGCGCCTTTCGTGCGGGTGAGAACTTACATGACAAAGAAATTTCGCTATCTTAGG 50810 Query 120 ACC 122 ||| Sbjct 50811 ACC 50813 >seq23786 Length=262 Score = 73.4 bits (80), Expect = 8e-11 Identities = 60/73 (82%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 46 TGAGACAGTGCCCAAATCGTTACGCCTTTCGTGCGGGTCGGAACTTACCCGACAAGGAAT 105 ||||| ||| |||| ||| ||| || |||||| |||||| || ||||||||||| |||| Sbjct 73 TGAGAAAGTACCCAGATCATTATGCTTTTCGTATGGGTCGAAATTTACCCGACAAAGAAT 14 Query 106 TTCGCTACCTTAG 118 || |||| ||||| Sbjct 13 TTTGCTATCTTAG 1 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1062098119040