Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Musa_20itinerans_20[genbank_20GCA_5F001649415.1_202016-05-21] 28,415 sequences; 455,349,267 total letters Query= AAMG01000811.1 Length=502 Score E Sequences producing significant alignments: (Bits) Value seq110 484 2e-134 seq838 480 2e-133 seq1707 343 4e-92 seq692 215 2e-53 seq31 190 6e-46 seq272 75.2 3e-11 >seq110 Length=548158 Score = 484 bits (536), Expect = 2e-134 Identities = 408/497 (82%), Gaps = 3/497 (1%) Strand=Plus/Plus Query 1 TACGACCGCAAGGTTGAAACTCAAAGGAATTGACGGGGACCCGCACAAGCGGTGGAGCAT 60 |||| |||||| |||||||||||||||||||||||| ||||||||||||||||||||| Sbjct 540795 TACGTTCGCAAGAATGAAACTCAAAGGAATTGACGGGGGCCCGCACAAGCGGTGGAGCAT 540854 Query 61 GTGGTTTAATTCGAAGCAACGCGAAGAACCTTACCAAATCTTGACATCCTCTGACCCCTC 120 |||||||||||||| |||| |||||||||||||||| |||||||| | ||| |||| Sbjct 540855 GTGGTTTAATTCGATGCAAAGCGAAGAACCTTACCAGGGCTTGACATGCCGTGAATCCTC 540914 Query 121 TAGAGATAGAGGTTTCCCCTTCGGGGGACAGAGTGACAGGTGATGCATGGTTGTCGTCAG 180 | || | ||||| | || |||||| || | ||||||| ||||||| ||||||||| Sbjct 540915 TTGAAAGAGAGGGGTGCC-TTCGGGA-ACGCGGACACAGGTGGTGCATGGCTGTCGTCAG 540972 Query 181 CTCGTGTCGTGAGATGTTGGGTTAAGTCCCGCAACGAGCGCAACCCTTAAGCTTAGTTGC 240 |||||| ||| || ||||||||||||||||||||||||||||||||| | |||||||| Sbjct 540973 CTCGTGCCGTAAGGTGTTGGGTTAAGTCCCGCAACGAGCGCAACCCTCGTGTTTAGTTGC 541032 Query 241 CATCATTAAGTTGGGCACTCTAAGTTGACTGCCGGTGACAAACCGGAGGAAGGTGGGGAC 300 || |||| |||| || || || | |||||||||||| || ||||||||||||||||| Sbjct 541033 CACCATTGAGTTTGGAACCCTGAACAGACTGCCGGTGATAAGCCGGAGGAAGGTGGGGAT 541092 Query 301 GACGTCAAATCATCATGCCCCTTATGATTTGGGCTACACACGTGCTACAATGGACAATAC 360 |||||||| ||||||||||||||||| ||||| |||||||||||||||||| | || Sbjct 541093 GACGTCAAGTCATCATGCCCCTTATGCCCTGGGCGACACACGTGCTACAATGGCCGGGAC 541152 Query 361 AAAGGGCAGCGAAACCGCGAGGTCAAGCAAATCCCATAAAGTTGTTCTCAGTTCGGATTG 420 |||||| |||| |||||||| ||| || |||| ||| || |||||||||||||| Sbjct 541153 AAAGGGTCGCGATCCCGCGAGGGTGAGCTAACCCCAAAAACCCGTCCTCAGTTCGGATTG 541212 Query 421 TAGTCTGCAACTCGACTATATGAAGCTGGAATCGCTAGTAATCGTAGATCAG-CATGCTA 479 || |||||||||| | ||||||| |||||| |||| ||| || | |||| ||| | | Sbjct 541213 CAGGCTGCAACTCGCTTGCATGAAGCCGGAATCACTAGCAATTGTCGGTCAGCCATACGA 541272 Query 480 CGGTGAATACGTTCCCG 496 |||||||| |||||||| Sbjct 541273 CGGTGAATTCGTTCCCG 541289 >seq838 Length=133837 Score = 480 bits (532), Expect = 2e-133 Identities = 407/497 (82%), Gaps = 3/497 (1%) Strand=Plus/Minus Query 1 TACGACCGCAAGGTTGAAACTCAAAGGAATTGACGGGGACCCGCACAAGCGGTGGAGCAT 60 |||| |||||| |||||||||||||||||||||||| ||||||||||||||||||||| Sbjct 51785 TACGTTCGCAAGAATGAAACTCAAAGGAATTGACGGGGGCCCGCACAAGCGGTGGAGCAT 51726 Query 61 GTGGTTTAATTCGAAGCAACGCGAAGAACCTTACCAAATCTTGACATCCTCTGACCCCTC 120 |||||||||||||| |||| |||||||||||||||| |||||||| | ||| |||| Sbjct 51725 GTGGTTTAATTCGATGCAAAGCGAAGAACCTTACCAGGGCTTGACATGCCGTGAATCCTC 51666 Query 121 TAGAGATAGAGGTTTCCCCTTCGGGGGACAGAGTGACAGGTGATGCATGGTTGTCGTCAG 180 | || | ||||| | || ||| || || || ||||||| ||||||| ||||||||| Sbjct 51665 TTGAAAGAGAGGGGTGCC-TTCAGGA-ACGCAGACACAGGTGGTGCATGGCTGTCGTCAG 51608 Query 181 CTCGTGTCGTGAGATGTTGGGTTAAGTCCCGCAACGAGCGCAACCCTTAAGCTTAGTTGC 240 |||||| ||| || |||||||||||||||| |||||||||||||||| | |||||||| Sbjct 51607 CTCGTGCCGTAAGGTGTTGGGTTAAGTCCCACAACGAGCGCAACCCTCGTGTTTAGTTGC 51548 Query 241 CATCATTAAGTTGGGCACTCTAAGTTGACTGCCGGTGACAAACCGGAGGAAGGTGGGGAC 300 || |||| |||| || || || | |||||||||||| || ||| |||||| |||||| Sbjct 51547 CACCATTGAGTTTGGAACCCTGAACAGACTGCCGGTGATAAGCCGAAGGAAGATGGGGAT 51488 Query 301 GACGTCAAATCATCATGCCCCTTATGATTTGGGCTACACACGTGCTACAATGGACAATAC 360 |||||||| ||||||||||||||||| ||||| |||||||||||||||||| | || Sbjct 51487 GACGTCAAGTCATCATGCCCCTTATGCCCTGGGCGACACACGTGCTACAATGGCCGGGAC 51428 Query 361 AAAGGGCAGCGAAACCGCGAGGTCAAGCAAATCCCATAAAGTTGTTCTCAGTTCGGATTG 420 |||||| |||| |||||||| ||| || |||| ||| || |||||||||||||| Sbjct 51427 AAAGGGTCGCGATCCCGCGAGGGTGAGCTAACCCCAAAAACCCGTCCTCAGTTCGGATTG 51368 Query 421 TAGTCTGCAACTCGACTATATGAAGCTGGAATCGCTAGTAATCGTAGATCAG-CATGCTA 479 ||| |||||||||| || ||||||| |||||||||||||||| | | | || ||| | | Sbjct 51367 TAGGCTGCAACTCGCCTGCATGAAGCCGGAATCGCTAGTAATCATCGGTTAGCCATACGA 51308 Query 480 CGGTGAATACGTTCCCG 496 |||||||| ||||| || Sbjct 51307 CGGTGAATTCGTTCTCG 51291 >seq1707 Length=60766 Score = 343 bits (380), Expect = 4e-92 Identities = 379/496 (76%), Gaps = 24/496 (5%) Strand=Plus/Plus Query 7 CGCAAGGTTGAAACTCAAAGGAATTGACGGGGACCCGCACAAGCGGTGGAGCATGTGGTT 66 |||||| |||||||||||||||||||| ||| ||||||||||||||||||||||||||| Sbjct 38684 CGCAAGAATGAAACTCAAAGGAATTGACAGGGGCCCGCACAAGCGGTGGAGCATGTGGTT 38743 Query 67 TAATTCGAAGCAACGCGAAGAACCTTACCAAATCTTGACATCCTCTGACCCCTCTAGAGA 126 |||||||| |||| ||||||||||||| | |||||||| || ||| ||||| || | Sbjct 38744 TAATTCGATGCAAAGCGAAGAACCTTATGAGGGCTTGACATGCTATGAATCCTCTTGAAA 38803 Query 127 TAGAGGTTTCCCCTTCGGGGGACAGAGTGACA--GGTGATGCATGGTTGTCGTCAGCTCG 184 ||||| | || |||||| | | | |||| |||| ||||||| ||| ||||||||| Sbjct 38804 GAGAGGGGTGCC-TTCGGG--AATGCG-GACATAGGTGGTGCATGGCTGTGGTCAGCTCG 38859 Query 185 TGTCGTGAGATGTTGGGTTAAGTCCCGCAACGAGCGCAACCCTTAAGCTTAGTTGCCATC 244 || | | || |||||| ||||||||||||| ||||||||| || | | |||||||||| | Sbjct 38860 TGCCATAAGGTGTTGGATTAAGTCCCGCAATGAGCGCAACTCTCATGTTTAGTTGCCACC 38919 Query 245 ATTAAGTTGGGCACTCTAAGTTGACTGCCGGTGACAAACCGGAGGAAGGTGGGGACGACG 304 ||| ||||||| || || | ||||| || ||| || | ||||||||||||||| |||| Sbjct 38920 ATTGAGTTGGGAACCCTGAACAGACTGTCGATGATAAGCTGGAGGAAGGTGGGGATGACG 38979 Query 305 TCAAATCATCATGCCCCTTATGATTTGGGCTACACACGTGCTACAATGGACAATACAAAG 364 |||| ||||||||||| |||| | | |||||||||||| | |||||| Sbjct 38980 TCAAGTCATCATGCCC---------TGGG--TGATATGTGCTACAATGGCCGGGACAAAG 39028 Query 365 GGCAGCGAAACCGCGAGGTCAAGCAAATCCCATAAAGTTGTTCTCAGTTCGGATTG-TAG 423 || |||| | || | ||| || |||| ||| ||| || ||||| |||| ||| Sbjct 39029 GGTCGCGATCCTATGAAGGTGAGCTAACCCCAAAAACCTGTCCTTAGTTCATATTGCTAG 39088 Query 424 TCTGCAACTCGACTATATGAAGCTGGAATCGCTAGTAATCGTAGATCAGC---ATGCTAC 480 |||||||||| || ||||||| |||||||||| | ||| | ||||| ||| | Sbjct 39089 -CTGCAACTCGCCTGAATGAAGCCGGAATCGCTATTTCTCGCTGGTCAGCCATATGGT-- 39145 Query 481 GGTGAATACGTTCCCG 496 ||||||| ||||| || Sbjct 39146 GGTGAATTCGTTCTCG 39161 >seq692 Length=163528 Score = 215 bits (238), Expect = 2e-53 Identities = 190/236 (81%), Gaps = 1/236 (0%) Strand=Plus/Plus Query 267 GACTGCCGGTGACAAACCGGAGGAAGGTGGGGACGACGTCAAATCATCATGCCCCTTATG 326 ||||||| |||| | || ||||||||||||||| |||||||| ||| |||| |||| ||| Sbjct 9508 GACTGCCAGTGAAATACTGGAGGAAGGTGGGGATGACGTCAAGTCAGCATGGCCCTCATG 9567 Query 327 ATTTGGGCTACACACGTGCTACAATGGACAATACAAAGGGCAGCGAAACCGCGAGGTCAA 386 ||||| |||||||||||||||||| | ||||| ||| ||| | ||| ||| | Sbjct 9568 GGCTGGGCCACACACGTGCTACAATGGCAATTACAATGGGAAGCAAGGCCGTAAGGCAGA 9627 Query 387 GCAAATCCCATAAAGTTGTTCTCAGTTCGGATTGTAGTCTGCAACTCGACTATATGAAGC 446 || ||||| | |||| | ||||||||||||||| ||||||||||| | |||||| Sbjct 9628 GCGAATCC-AGAAAGATTGCCTCAGTTCGGATTGTTCTCTGCAACTCGGGAACATGAAGT 9686 Query 447 TGGAATCGCTAGTAATCGTAGATCAGCATGCTACGGTGAATACGTTCCCGCTCCCT 502 |||||||||||||||||| ||||||||||||| ||||||||| || |||| |||| Sbjct 9687 TGGAATCGCTAGTAATCGCAGATCAGCATGCTGCGGTGAATATGTACCCGGGCCCT 9742 Score = 215 bits (238), Expect = 2e-53 Identities = 190/236 (81%), Gaps = 1/236 (0%) Strand=Plus/Plus Query 267 GACTGCCGGTGACAAACCGGAGGAAGGTGGGGACGACGTCAAATCATCATGCCCCTTATG 326 ||||||| |||| | || ||||||||||||||| |||||||| ||| |||| |||| ||| Sbjct 15429 GACTGCCAGTGAAATACTGGAGGAAGGTGGGGATGACGTCAAGTCAGCATGGCCCTCATG 15488 Query 327 ATTTGGGCTACACACGTGCTACAATGGACAATACAAAGGGCAGCGAAACCGCGAGGTCAA 386 ||||| |||||||||||||||||| | ||||| ||| ||| | ||| ||| | Sbjct 15489 GGCTGGGCCACACACGTGCTACAATGGCAATTACAATGGGAAGCAAGGCCGTAAGGCAGA 15548 Query 387 GCAAATCCCATAAAGTTGTTCTCAGTTCGGATTGTAGTCTGCAACTCGACTATATGAAGC 446 || ||||| | |||| | ||||||||||||||| ||||||||||| | |||||| Sbjct 15549 GCGAATCC-AGAAAGATTGCCTCAGTTCGGATTGTTCTCTGCAACTCGGGAACATGAAGT 15607 Query 447 TGGAATCGCTAGTAATCGTAGATCAGCATGCTACGGTGAATACGTTCCCGCTCCCT 502 |||||||||||||||||| ||||||||||||| ||||||||| || |||| |||| Sbjct 15608 TGGAATCGCTAGTAATCGCAGATCAGCATGCTGCGGTGAATATGTACCCGGGCCCT 15663 Score = 161 bits (178), Expect = 3e-37 Identities = 179/235 (76%), Gaps = 13/235 (6%) Strand=Plus/Plus Query 16 GAAACTCAAAGGAATTGACGGGGACCCGCACAAGCGGTGGAGCATGTGGTTTAATTCGAA 75 ||||||||||||||||||||||| || |||||||||||||||||||||||||||||||| Sbjct 8990 GAAACTCAAAGGAATTGACGGGGGCCTGCACAAGCGGTGGAGCATGTGGTTTAATTCGAT 9049 Query 76 GCAACGCGAAGAACCTTACCAAATCTTGACAT-----CCTC-TGACC---CCTCTAGA-G 125 ||||||| | |||||||||| ||||||||| | || |||| ||| | | | Sbjct 9050 ACAACGCGCAAAACCTTACCAGCTCTTGACATATGAACTTCAAGACCTGTCCTTAACAGG 9109 Query 126 ATAGAGGTTTCCCCTTCGGGGGACAGAGTGACAGGTGATGCATGGTTGTCGTCAGCTCGT 185 || | | ||| || | ||||||| ||||||| |||||||||||||| Sbjct 9110 CCGGATTTATGAATTTCTGG---CTTTCATACAGGTGCTGCATGGCTGTCGTCAGCTCGT 9166 Query 186 GTCGTGAGATGTTGGGTTAAGTCCCGCAACGAGCGCAACCCTTAAGCTTAGTTGC 240 ||||||||||||| ||| |||||| |||||||| |||||| | || ||||| Sbjct 9167 GTCGTGAGATGTTTGGTCAAGTCCTATAACGAGCGAAACCCTCATTTTTTGTTGC 9221 Score = 152 bits (168), Expect = 2e-34 Identities = 177/235 (75%), Gaps = 13/235 (6%) Strand=Plus/Plus Query 16 GAAACTCAAAGGAATTGACGGGGACCCGCACAAGCGGTGGAGCATGTGGTTTAATTCGAA 75 ||||||||||||||||||||||| || |||||||||||||||||||||||||||||||| Sbjct 14911 GAAACTCAAAGGAATTGACGGGGGCCTGCACAAGCGGTGGAGCATGTGGTTTAATTCGAT 14970 Query 76 GCAACGCGAAGAACCTTACCAAATCTTGACAT-----CCTC-TGACC---CCTCTAGA-G 125 ||||||| | |||||||||| ||||||||| | || |||| ||| | | | Sbjct 14971 ACAACGCGCAAAACCTTACCAGCTCTTGACATATGAACTTCAAGACCTGTCCTTAACAGG 15030 Query 126 ATAGAGGTTTCCCCTTCGGGGGACAGAGTGACAGGTGATGCATGGTTGTCGTCAGCTCGT 185 || | | ||| || | ||||||| ||||||| |||||||||||||| Sbjct 15031 CCGGATTTATGAATTTCTGG---CTTTCATACAGGTGCTGCATGGCTGTCGTCAGCTCGT 15087 Query 186 GTCGTGAGATGTTGGGTTAAGTCCCGCAACGAGCGCAACCCTTAAGCTTAGTTGC 240 || |||| ||||| ||| |||||| |||||||| |||||| | || ||||| Sbjct 15088 GTTGTGAAATGTTTGGTCAAGTCCTATAACGAGCGAAACCCTCATTTTTTGTTGC 15142 >seq31 Length=871705 Score = 190 bits (210), Expect = 6e-46 Identities = 202/265 (76%), Gaps = 1/265 (0%) Strand=Plus/Plus Query 233 TTAGTTGCCATCATTAAGTTGGGCACTCTAAGTTGACTGCCGGTGACAAACCGGAGGAAG 292 |||||||||| ||| |||| | || | | |||||||||||| | ||||||||| Sbjct 316586 TTAGTTGCCACTATTGAGTTTGAAACCTTGAACAGACTGCCGGTGATCAGTCGGAGGAAG 316645 Query 293 GTGGGGACGACGTCAAATCATCATGCCCCTTATGATTTGGGCTACACACGTGCTACAATG 352 | | || |||||||| ||||||| ||||||||| | |||| |||||| |||||||||| Sbjct 316646 ATAGAGATGACGTCAAGTCATCATACCCCTTATGTCTCGGGCGACACACATGCTACAATG 316705 Query 353 GACAATACAAAGGGCAGCGAAACCGCGAGGTCAAGCAAATCCCATAAAGTTGTTCTCAGT 412 | | | |||||||| |||| || |||| || | || |||| | | || |||||| Sbjct 316706 GTCGAGACAAAGGGTCGCGATCCCATGAGGGTAAACTAACCCCAAAGACCCGTCCTCAGT 316765 Query 413 TCGGATTGTAGTCTGCAACTCGACTATATGAAGCTGGAATCGCTAGTAATCGTAGATCAG 472 |||||||| || ||||||||| || ||||||| |||||||||||||||| |||||| Sbjct 316766 TCGGATTGCAGGCTGCAACTCACCTGCATGAAGCCGGAATCGCTAGTAATCACCGATCAG 316825 Query 473 -CATGCTACGGTGAATACGTTCCCG 496 ||| ||||| ||| |||||||| Sbjct 316826 CCATATGACGGTAAATTCGTTCCCG 316850 >seq272 Length=341940 Score = 75.2 bits (82), Expect = 3e-11 Identities = 75/96 (78%), Gaps = 1/96 (1%) Strand=Plus/Plus Query 1 TACGACCGCAAGGTTGAAACTCAAAGGAATTGACGGGGACCCGCACAAGCGGTGGAGCAT 60 ||||| || ||| |||||||| |||| |||||| || || || ||||||| ||||| Sbjct 144363 TACGATCGTAAGATTGAAACTAAAAGTAATTGATGGAAGCCTACAATAGCGGTGAAGCAT 144422 Query 61 GTGGTTTAATTCGAAGCAACGCG-AAGAACCTTACC 95 ||||||||||| || ||| | | || ||||||||| Sbjct 144423 GTGGTTTAATTTGATACAATGTGCAAAAACCTTACC 144458 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1503572638400