Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Musa_20itinerans_20[genbank_20GCA_5F001649415.1_202016-05-21] 28,415 sequences; 455,349,267 total letters Query= AAMG01001083.1 Length=339 Score E Sequences producing significant alignments: (Bits) Value seq597 158 2e-36 seq1607 109 1e-21 seq399 80.6 5e-13 >seq597 Length=183504 Score = 158 bits (174), Expect = 2e-36 Identities = 166/216 (77%), Gaps = 2/216 (1%) Strand=Plus/Minus Query 111 GGGACAGTGTCAGTCGGGCAGTTTGACTGGGGCGGTCGCCTCCCAAAGAGTAACGGAGGC 170 |||||||| |||| | |||||| | |||| |||||||||| ||||||||||| Sbjct 130443 GGGACAGTCTCAGGTAGACAGTTTCTATAGGGCATAGGCCTCCCAAAAGGTAACGGAGGC 130384 Query 171 GCCCAAAGATACCCTCAGCTTGGATGGAAACCATGCGCAC-AGTGCAAAGGCAAAAGGGT 229 | ||||| | |||| | ||| ||| | || | | |||||||||||| ||||| Sbjct 130383 GTGCAAAGGTTTCCTCGGGCCGGACGGAGATTG-GCCCTCGAGTGCAAAGGCAGAAGGGA 130325 Query 230 GTTTGACTGCGACACCCTCAAGTCTAGCAGGGACGAAAGTCGGGCTTAATGATCCGGCGG 289 | |||||||| | |||| | ||| |||||||||||||||||| |||| ||||||| ||| Sbjct 130324 GCTTGACTGCAAGACCCACCCGTCGAGCAGGGACGAAAGTCGGCCTTAGTGATCCGACGG 130265 Query 290 TGCTGAATGGAACGGCCGTCGCTCGACGGATAAAAG 325 ||| || ||||| || |||||||| ||||||||||| Sbjct 130264 TGCCGAGTGGAAGGGTCGTCGCTCAACGGATAAAAG 130229 >seq1607 Length=65845 Score = 109 bits (120), Expect = 1e-21 Identities = 163/230 (71%), Gaps = 6/230 (3%) Strand=Plus/Minus Query 111 GGGACAGTGTCAGTCGGGCAGTTTGACTGGGGCGGTCGCCTCCCAAAGAGTAACGGAGGC 170 |||||| ||| || ||| ||||| ||||||||| |||||| ||||||||||||||| Sbjct 9828 GGGACACTGTGAGGTGGGTAGTTTTTCTGGGGCGGATGCCTCCTAAAGAGTAACGGAGGT 9769 Query 171 GCCCAAAGATACCCTCA-GCTTGGATGGAAACCATGCGCACAGTGCAAAGGCAAAAGGGT 229 | | ||| || |||| |||| | | | || || | || || | ||| | Sbjct 9768 GTGCGAAGGTAGGCTCAAGCTTTTCTTCAGCTCGTGAGC-----GTAATGGTATAAGCCT 9714 Query 230 GTTTGACTGCGACACCCTCAAGTCTAGCAGGGACGAAAGTCGGGCTTAATGATCCGGCGG 289 | |||||| || ||| | ||| | ||| |||||||||||| | || |||||||| | Sbjct 9713 GCCTGACTGTGAGACCTACTGGTCGAACAGAGACGAAAGTCGGCCATAGTGATCCGGGAG 9654 Query 290 TGCTGAATGGAACGGCCGTCGCTCGACGGATAAAAGCTACCCTGGGGATA 339 | | | ||||| ||| |||||| |||||| |||| ||| | ||||||| Sbjct 9653 TCCCGTGTGGAAGGGCTCTCGCTCAACGGATCAAAGGTACGCCGGGGATA 9604 >seq399 Length=256212 Score = 80.6 bits (88), Expect = 5e-13 Identities = 91/122 (75%), Gaps = 0/122 (0%) Strand=Plus/Minus Query 211 AGTGCAAAGGCAAAAGGGTGTTTGACTGCGACACCCTCAAGTCTAGCAGGGACGAAAGTC 270 |||||||||||||||||| | |||||| | | || | || |||| ||| |||||| Sbjct 197382 AGTGCAAAGGCAAAAGGGAGCTTGACTACAAGGTCCACCCATCGAGCAAGGAAAAAAGTC 197323 Query 271 GGGCTTAATGATCCGGCGGTGCTGAATGGAACGGCCGTCGCTCGACGGATAAAAGCTACC 330 |||| |||| | ||| || || ||||| || |||| ||| ||||||||||| ||| Sbjct 197322 AACCTTAGTGATTCAACGGAGCCGAGTGGAAGGGTCGTCACTCAACGGATAAAAGTTACT 197263 Query 331 CT 332 || Sbjct 197262 CT 197261 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 982120851040