Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Musa_20itinerans_20[genbank_20GCA_5F001649415.1_202016-05-21] 28,415 sequences; 455,349,267 total letters Query= AAMG01001178.1 Length=367 Score E Sequences producing significant alignments: (Bits) Value seq110 232 1e-58 seq598 210 5e-52 seq692 203 7e-50 seq3342 178 3e-42 seq9 167 5e-39 seq103 152 1e-34 seq729 132 1e-28 seq204 82.4 2e-13 seq838 75.2 2e-11 >seq110 Length=548158 Score = 232 bits (256), Expect = 1e-58 Identities = 240/309 (78%), Gaps = 18/309 (6%) Strand=Plus/Minus Query 29 CACGCGGCATTGGCTGGATCAGGCTTTCGCCCATTGTCCAATATTCCCCACTGCTGCCTC 88 |||||||||||| || |||||||||||||||||| || |||||||||||||||||| Sbjct 540332 CACGCGGCATTG-CTCCGTCAGGCTTTCGCCCATTGCGGAAAATTCCCCACTGCTGCCTC 540274 Query 89 CCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGTGACTGATCATCCTCTCAGACCAGTT 148 |||||||||||||| |||||||||||| |||||||| |||||||||||||| |||||| | Sbjct 540273 CCGTAGGAGTCTGGGCCGTGTCTCAGTCCCAGTGTGGCTGATCATCCTCTCGGACCAGCT 540214 Query 149 ACGGATCGTCGCCTTGGTGAGCCATTACCTCACCAACTAGCTAATCCGACCTAGGCTCAT 208 || |||| |||||||||| ||| ||||||||||||||||||||||| ||| | || | | Sbjct 540213 ACTGATCATCGCCTTGGTAAGCTATTACCTCACCAACTAGCTAATCAGACGCAAGCCCCT 540154 Query 209 CTGATAGCGCAAGGCCCGAAGGTCCCCTGCTTTCTCCCGTAGGACGTATGCGGTATTAGC 268 | | || | || ||| | || || || || | || | ||||||||| Sbjct 540153 C--------CTCGGGCGGA--TTCCTCCTTTTGCT-CCTCAG--CCTACGGGGTATTAGC 540107 Query 269 GTCCGTTTCCGAACGTTATCCCCCACTACCA--GGCAGATTCCTAGGCATTACTCACCCG 326 |||||||| ||| | ||| || ||| ||||| ||| || || ||||||||||| Sbjct 540106 AACCGTTTCCAGTTGTTGTTCCC--CTCCCAAGGGCAGGTTCTTACGCGTTACTCACCCG 540049 Query 327 TCCGCCGCT 335 |||||| || Sbjct 540048 TCCGCCACT 540040 >seq598 Length=182560 Score = 210 bits (232), Expect = 5e-52 Identities = 164/193 (85%), Gaps = 2/193 (1%) Strand=Plus/Minus Query 2 TTTACAATCCGAAGACCTTCTTTCACACACGCGGCATTGGCTGGATCAGGCTTTCGCCCA 61 || |||| ||| | |||||| | | |||||||||||| || ||||||||||||||| Sbjct 136697 TTCACAACCCGTGGGCCTTCTACCTC-CACGCGGCATTG-CTCCGTCAGGCTTTCGCCCA 136640 Query 62 TTGTCCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGT 121 ||| || |||||||||| ||||||||||||||||||||| |||||||||||| ||||| Sbjct 136639 TTGCGAAAAATTCCCCACTCCTGCCTCCCGTAGGAGTCTGGGCCGTGTCTCAGTCCCAGT 136580 Query 122 GTGACTGATCATCCTCTCAGACCAGTTACGGATCGTCGCCTTGGTGAGCCATTACCTCAC 181 ||| ||| |||||||||| |||||| || |||| |||||||||| ||| |||||||||| Sbjct 136579 GTGGCTGCTCATCCTCTCGGACCAGCTATTGATCATCGCCTTGGTAAGCTATTACCTCAC 136520 Query 182 CAACTAGCTAATC 194 ||||||||||||| Sbjct 136519 CAACTAGCTAATC 136507 Score = 210 bits (232), Expect = 5e-52 Identities = 164/193 (85%), Gaps = 2/193 (1%) Strand=Plus/Minus Query 2 TTTACAATCCGAAGACCTTCTTTCACACACGCGGCATTGGCTGGATCAGGCTTTCGCCCA 61 || |||| ||| | |||||| | | |||||||||||| || ||||||||||||||| Sbjct 140202 TTCACAACCCGTGGGCCTTCTACCTC-CACGCGGCATTG-CTCCGTCAGGCTTTCGCCCA 140145 Query 62 TTGTCCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGT 121 ||| || |||||||||| ||||||||||||||||||||| |||||||||||| ||||| Sbjct 140144 TTGCGAAAAATTCCCCACTCCTGCCTCCCGTAGGAGTCTGGGCCGTGTCTCAGTCCCAGT 140085 Query 122 GTGACTGATCATCCTCTCAGACCAGTTACGGATCGTCGCCTTGGTGAGCCATTACCTCAC 181 ||| ||| |||||||||| |||||| || |||| |||||||||| ||| |||||||||| Sbjct 140084 GTGGCTGCTCATCCTCTCGGACCAGCTATTGATCATCGCCTTGGTAAGCTATTACCTCAC 140025 Query 182 CAACTAGCTAATC 194 ||||||||||||| Sbjct 140024 CAACTAGCTAATC 140012 >seq692 Length=163528 Score = 203 bits (224), Expect = 7e-50 Identities = 179/220 (81%), Gaps = 4/220 (2%) Strand=Plus/Minus Query 1 CTTTACAATCCGAA--GACCTTCTTTCACACACGCGGCATTGGCTGGATCAGGCTTTCGC 58 |||||||| | ||| | ||||||| ||| |||||| |||| ||||||| ||||||||| Sbjct 8545 CTTTACAAGCGGAATTGCCCTTCTT-CACTCACGCGATATTG-CTGGATCGGGCTTTCGC 8488 Query 59 CCATTGTCCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCC 118 ||||||||||| |||||||||||| ||| ||||| |||||| || || ||||||||| || Sbjct 8487 CCATTGTCCAAGATTCCCCACTGCAGCCCCCCGTGGGAGTCCGGGCCCTGTCTCAGTCCC 8428 Query 119 AGTGTGACTGATCATCCTCTCAGACCAGTTACGGATCGTCGCCTTGGTGAGCCATTACCT 178 |||||| |||||||||| ||||||| || | ||| | | |||||| |||| |||||| Sbjct 8427 AGTGTGGCTGATCATCCGAAAAGACCAGCTAAGCATCATTGGCTTGGTTAGCCTTTACCT 8368 Query 179 CACCAACTAGCTAATCCGACCTAGGCTCATCTGATAGCGC 218 |||||||| ||||| | || ||||||||| | ||||| Sbjct 8367 TACCAACTACCTAATACTACGCAGGCTCATCAAACAGCGC 8328 Score = 203 bits (224), Expect = 7e-50 Identities = 179/220 (81%), Gaps = 4/220 (2%) Strand=Plus/Minus Query 1 CTTTACAATCCGAA--GACCTTCTTTCACACACGCGGCATTGGCTGGATCAGGCTTTCGC 58 |||||||| | ||| | ||||||| ||| |||||| |||| ||||||| ||||||||| Sbjct 14466 CTTTACAAGCGGAATTGCCCTTCTT-CACTCACGCGATATTG-CTGGATCGGGCTTTCGC 14409 Query 59 CCATTGTCCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCC 118 ||||||||||| |||||||||||| ||| ||||| |||||| || || ||||||||| || Sbjct 14408 CCATTGTCCAAGATTCCCCACTGCAGCCCCCCGTGGGAGTCCGGGCCCTGTCTCAGTCCC 14349 Query 119 AGTGTGACTGATCATCCTCTCAGACCAGTTACGGATCGTCGCCTTGGTGAGCCATTACCT 178 |||||| |||||||||| ||||||| || | ||| | | |||||| |||| |||||| Sbjct 14348 AGTGTGGCTGATCATCCGAAAAGACCAGCTAAGCATCATTGGCTTGGTTAGCCTTTACCT 14289 Query 179 CACCAACTAGCTAATCCGACCTAGGCTCATCTGATAGCGC 218 |||||||| ||||| | || ||||||||| | ||||| Sbjct 14288 TACCAACTACCTAATACTACGCAGGCTCATCAAACAGCGC 14249 >seq3342 Length=21406 Score = 178 bits (196), Expect = 3e-42 Identities = 228/309 (74%), Gaps = 18/309 (6%) Strand=Plus/Plus Query 29 CACGCGGCATTGGCTGGATCAGGCTTTCGCCCATTGTCCAATATTCCCCACTGCTGCCTC 88 |||||| ||||| || |||||||||||||||||| || |||||||||| |||||| Sbjct 8805 CACGCGACATTG-CTCTGTCAGGCTTTCGCCCATTGCGAAAAATTCCCCACTATTGCCTC 8863 Query 89 CCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGTGACTGATCATCCTCTCAGACCAGTT 148 ||||||| |||||| || ||||| ||| || || || ||||||||||||| ||||| | Sbjct 8864 CCGTAGGCGTCTGGGCCATGTCTTAGTCCCGGTATGGGTGATCATCCTCTCGGACCAACT 8923 Query 149 ACGGATCGTCGCCTTGGTGAGCCATTACCTCACCAACTAGCTAATCCGACCTAGGCTCAT 208 || |||| |||||||||| ||| ||||||||||||||||||||||| || | |||| | Sbjct 8924 ACTGATCATCGCCTTGGTAAGCTATTACCTCACCAACTAGCTAATCAAACGCAAGCTCCT 8983 Query 209 CTGATAGCGCAAGGCCCGAAGGTCCCCTGCTTTCTCCCGTAGGACGTATGCGGTATTAGC 268 | | | |||| || ||| |||| | | | | | || | ||||||||| Sbjct 8984 C------CTC-AGGC-----GGATTCCTCCTTTTGCTCCTCAG-CCTACGGGGTATTAGC 9030 Query 269 GTCCGTTTCCGAACGTTATCCCCCACTACCA--GGCAGATTCCTAGGCATTACTCACCCG 326 ||||||| ||| | ||| || ||| |||| ||| || || |||||||| || Sbjct 9031 AATCGTTTCCAGTTGTTGTTCCC--CTCCCAAGGGCATGTTCTTATGCGTTACTCACACG 9088 Query 327 TCCGCCGCT 335 |||||| || Sbjct 9089 TCCGCCACT 9097 >seq9 Length=1257773 Score = 167 bits (184), Expect = 5e-39 Identities = 124/145 (86%), Gaps = 0/145 (0%) Strand=Plus/Plus Query 47 TCAGGCTTTCGCCCATTGTCCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCG 106 |||||||||||||||||| || ||||||||| |||||||||||||||||| ||| ||| Sbjct 1249972 TCAGGCTTTCGCCCATTGCGGAAAATTCCCCACCGCTGCCTCCCGTAGGAGTTTGGGCCG 1250031 Query 107 TGTCTCAGTTCCAGTGTGACTGATCATCCTCTCAGACCAGTTACGGATCGTCGCCTTGGT 166 ||||||| | |||||||| |||||||||||||| || ||| ||| | || || ||||||| Sbjct 1250032 TGTCTCAATCCCAGTGTGGCTGATCATCCTCTCGGATCAGCTACTGGTCATCACCTTGGT 1250091 Query 167 GAGCCATTACCTCACCAACTAGCTA 191 ||| ||||||||||||| || ||| Sbjct 1250092 AAGCTATTACCTCACCAAATATCTA 1250116 >seq103 Length=561466 Score = 152 bits (168), Expect = 1e-34 Identities = 107/122 (88%), Gaps = 0/122 (0%) Strand=Plus/Minus Query 68 AATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGTGACT 127 || |||| ||||||||||||||||||||||||||| |||||||||||| ||||||| || Sbjct 343852 AAAATTCGCCACTGCTGCCTCCCGTAGGAGTCTGGGCCGTGTCTCAGTCTCAGTGTGGCT 343793 Query 128 GATCATCCTCTCAGACCAGTTACGGATCGTCGCCTTGGTGAGCCATTACCTCACCAACTA 187 |||||||||||| || ||| ||| |||| |||| |||| ||| |||||||||||||||| Sbjct 343792 GATCATCCTCTCGGATCAGCTACTGATCATCGCTGTGGTAAGCTATTACCTCACCAACTA 343733 Query 188 GC 189 || Sbjct 343732 GC 343731 >seq729 Length=153937 Score = 132 bits (146), Expect = 1e-28 Identities = 131/166 (79%), Gaps = 4/166 (2%) Strand=Plus/Minus Query 30 ACGCGGCATTGG-CTGGATCAGGCTTTCGCCCATTGTCCAATATTCCCCACTGCTGCCTC 88 ||||| ||||| ||| ||||| ||||||| |||| || |||| |||||||| ||| Sbjct 102497 ACGCGACATTGCACTG--TCAGGTTTTCGCCTATTGCAAAAAATTCTCCACTGCTACCTT 102440 Query 89 CCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGTGACTGATCATCCTCTCAGACCAGTT 148 |||||||| ||| ||| |||| | | ||||| |||||||||||| ||||||| | Sbjct 102439 TAGTAGGAGTTTGGGTCGTATCTCGATCCTAGTGTAGTTGATCATCCTCT-AGACCAGCT 102381 Query 149 ACGGATCGTCGCCTTGGTGAGCCATTACCTCACCAACTAGCTAATC 194 || |||| ||| || ||| ||| ||||||||||||||||||||||| Sbjct 102380 ACTGATCATCGTCTCGGTAAGCTATTACCTCACCAACTAGCTAATC 102335 >seq204 Length=394486 Score = 82.4 bits (90), Expect = 2e-13 Identities = 85/111 (77%), Gaps = 3/111 (3%) Strand=Plus/Plus Query 46 ATCAGGCTTTCGCCCATTGTCCAA---TATTCCCCACTGCTGCCTCCCGTAGGAGTCTGG 102 |||||||||||| |||||| || | || ||||| || | || ||| |||||||| Sbjct 286252 ATCAGGCTTTCGTCCATTGCAAAAAGGTTTTTTCCACTACTACTTCTTGTATGAGTCTGG 286311 Query 103 ACCGTGTCTCAGTTCCAGTGTGACTGATCATCCTCTCAGACCAGTTACGGA 153 | | |||||| | |||||||| |||||||| |||||| ||||| ||| || Sbjct 286312 ATTGCGTCTCAATACCAGTGTGGCTGATCATTCTCTCAAACCAGATACTGA 286362 >seq838 Length=133837 Score = 75.2 bits (82), Expect = 2e-11 Identities = 55/63 (87%), Gaps = 1/63 (2%) Strand=Plus/Plus Query 29 CACGCGGCATTGGCTGGATCAGGCTTTCGCCCATTGTCCAATATTCCCCACTGCTGCCTC 88 |||||||||||| || |||||||||||||||||| || |||||||||||||||||| Sbjct 52248 CACGCGGCATTG-CTCCGTCAGGCTTTCGCCCATTGCGGAAAATTCCCCACTGCTGCCTC 52306 Query 89 CCG 91 ||| Sbjct 52307 CCG 52309 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1071695391200