Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Musa_20itinerans_20[genbank_20GCA_5F001649415.1_202016-05-21] 28,415 sequences; 455,349,267 total letters Query= AAMG01001213.1 Length=600 Score E Sequences producing significant alignments: (Bits) Value seq597 233 7e-59 seq3787 181 4e-43 seq1607 178 5e-42 seq774 104 8e-20 >seq597 Length=183504 Score = 233 bits (258), Expect = 7e-59 Identities = 337/469 (72%), Gaps = 26/469 (6%) Strand=Plus/Plus Query 138 CTGCACCTAAATGCATTTCGGGGAGAACCAGCTATCACGAAGTTTGATTGGCCTTTCACC 197 |||| ||| ||||||||||||||||||||||||| | | | || || |||| ||||||| Sbjct 131836 CTGCGCCTCAATGCATTTCGGGGAGAACCAGCTAGCTCTAGATTCGAGTGGCATTTCACC 131895 Query 198 CCTATCCACAGGTCATCCCCTCAGTTTTCAACCTAAGTGGGTTCGGTCCTCCACGCGGTC 257 |||| ||||| |||||| || | | |||||| ||| ||||||| || |||| || Sbjct 131896 CCTAACCACAACTCATCCGCTGATTCTTCAACAACAGTCGGTTCGGACCACCACTTAGTT 131955 Query 258 TTACCCGCGCTTCAACCTGCCCATGGATAGATCACTTCGCTTCGGGT-CTTGATC-GTGC 315 | |||| |||||| |||| |||||||||||||| | ||||||| | | | | ||| Sbjct 131956 TCACCCAAGCTTCATCCTGGTCATGGATAGATCACCCAGGTTCGGGTCCATAAGCAGTGA 132015 Query 316 CACTCATACGCCCTATTCGGACTCGCTTTCGCTACGGCTACCCCACACGG----GTTAAC 371 || | |||||||| |||||||||||||||||||| || || ||||| Sbjct 132016 CAAT----CGCCCTATGAAGACTCGCTTTCGCTACGGCT---CCGGTGGGTTCCCTTAAC 132068 Query 372 CTCGCGACACAACGCA-AACTCGCAGGCTCATTCTTCAAAAGGCACGCCGTCACCTGGTA 430 | || ||| | | | | | | |||||||||||| | |||| | |||| Sbjct 132069 CAAGC--CACTGCCTATGAGTTGTCGACTCATTCTTCAACAAGCACACGGTCA------- 132119 Query 431 CCTAAAAGGCACTTCAGCTCCGACGGATTGTAGGCACATGGTTTCAGGTACTATTTCACT 490 ||| || ||| |||| || | ||| || || ||||||| || ||||||||| Sbjct 132120 --GAAATCACA-TTCTCCTCCCACTGCTTGGGAGCTCACGGTTTCATGTTTTATTTCACT 132176 Query 491 CCCCGCCAGGGGTACTTTTCACCTTTCCCTCACGGTACTTGTCCGCTATCGGTCACCAAG 550 ||| ||||| ||||||||||||||||||||||||| | |||||||||||||| || Sbjct 132177 CCCTAATGGGGGTTCTTTTCACCTTTCCCTCACGGTACTACTTCGCTATCGGTCACCCAG 132236 Query 551 GAGTATTTAGGCTTAACGGGTGGTCCCGCCAGATTCACACGAAATTTCA 599 |||||||||| ||| ||||||| | |||||||||| ||| || Sbjct 132237 GAGTATTTAGCCTTGCAATGTGGTCCTTGCTGATTCACACGGGATTCCA 132285 >seq3787 Length=16741 Score = 181 bits (200), Expect = 4e-43 Identities = 272/381 (71%), Gaps = 28/381 (7%) Strand=Plus/Minus Query 203 CCACAGGTCATCCCCTCAGTTTTCAACCTAAGTGGGTTCGGTCCTCCACGCGGTCTTACC 262 ||||| |||||| || | | |||||| | ||| |||||| ||||||| || | ||| Sbjct 16700 CCACAACTCATCCGCTGATTCTTCAACATCAGTCGGTTCGAACCTCCACTTAGTTTCACC 16641 Query 263 CGCGCTTCAACCTGCCCATGGATAGATCACTTCGCTTCGGGTCT-TGATC-GTGCCACTC 320 | |||||| |||| |||||||||||||| | | |||||||| | | | ||| || || Sbjct 16640 CAAGCTTCATCCTGGTCATGGATAGATCACCTAGGTTCGGGTCCATAAGCAGTGACAATC 16581 Query 321 ATACGCCCTATTCGGACTCGCTTTCGCTACGGCTACCCCACACGGGT----TAACCTCGC 376 ||||||| ||||||||||||||| | || || || | ||||| || Sbjct 16580 ----GCCCTATGAAGACTCGCTTTCGCTATGACT---CCGGTGGGTTCCCTTAACCAAGC 16528 Query 377 GACACAACGCAA-ACTCGCAGGCTCATTCTTCAAAAGGCACGCCGTCACCTGGTACCTAA 435 ||| | | | |||| |||||||||||||| |||||||| | || Sbjct 16527 --CACTGCCTATGAGTCGCCGGCTCATTCTTCAACAGGCACGCAAT-----------TAG 16481 Query 436 AAGGCAC-TTCAGCTCCGACGGATTGTAGGCACATGGTTTCAGGTACTATTTCACTCCCC 494 || ||| ||| |||| || || || || ||||||| || |||||||||||||| Sbjct 16480 AAATCACATTCTCCTCCCACTACTTAGGAGCTCACGGTTTCATGTTCTATTTCACTCCCC 16421 Query 495 GCCAGGGGTACTTTTCACCTTTCCCTCACGGTACTTGTCCGCTATCGGTCACCAAGGAGT 554 | ||||| ||||||||||||||||||||||||| | |||||||||||||| |||||| Sbjct 16420 GATGGGGGTTCTTTTCACCTTTCCCTCACGGTACTACTTCGCTATCGGTCACCCAGGAGT 16361 Query 555 ATTTAGGCTTAACGGGTGGTC 575 |||||| ||| ||||||| Sbjct 16360 ATTTAGCCTTGCAAGGTGGTC 16340 >seq1607 Length=65845 Score = 178 bits (196), Expect = 5e-42 Identities = 367/532 (69%), Gaps = 33/532 (6%) Strand=Plus/Plus Query 56 ATTCGGAGTTTGGTTGATTTCGGTAAGCTTGTGG-GCC-CCCTAGACCATCCAGTGCTCT 113 ||||||||||| || | |||||| | || ||| |||||| |||| |||||||| Sbjct 11416 ATTCGGAGTTTCCCTGGGGTTGGTAAG---GCGGAGCCACCCTAGCCCATTGAGTGCTCT 11472 Query 114 ACCTCCGGGAAGAAACACGCGACGCTGCACCTAAATGCATTTCGGGGAGAACCAGCTATC 173 ||||| || | ||| ||||| || |||| |||||| ||| |||||||||| Sbjct 11473 ACCTCGGGCCATCGACATCATACGCTCTACTGAAATAGATTTCGCGGAAAACCAGCTATA 11532 Query 174 ACGAAGTTTGATTGGCCTTTCACCCCTATCCACAGGTCATCCCCTCAGTTTTCAACCTAA 233 | | ||| ||||||||||||||||| ||||| ||||||||| | ||| | || || Sbjct 11533 TCCGATCTTGGTTGGCCTTTCACCCCTAGCCACAAGTCATCCCCGTATTTTGCCACATAC 11592 Query 234 GTGGGTTCGGTCCTCCACG--CGGTCTTACCCGCGCTTCAACCTGCCCATGGATAGATCA 291 ||||||||||||||||| | | || | | | | ||||||||||| ||||| |||||| Sbjct 11593 GTGGGTTCGGTCCTCCAAGGCCTGTGTGA-GCTCTCTTCAACCTGCTCATGGCTAGATCG 11651 Query 292 CTTCGCTTCGGGTCTTGATCGTGCCACTCATACGCCCTATTCGGACTCGCTTTCGCTA-C 350 | | |||||||| || | | | ||| | || | || | | | | Sbjct 11652 ATCGGTTTCGGGTC-AAATAG-GAAGAACGTACATCTTA-------TATCTCTGGAAAGC 11702 Query 351 GGCTACCCCACACGGGTTAA-CCTCGCGACACAACGCAAACTCGCAGGCTCATTCTTCAA 409 | |||| || | || |||| || | | || | ||||| | | ||| | ||| Sbjct 11703 GCCTACACCTAATGGCTTAAGCCGCTGTTCCCATTTC---CTCGCTGACCCATCATGCAA 11759 Query 410 AAGGCACGCCGTCA-CCTG-GTACCTAAAAGGCACTTCAGCTCCGACGGATTGTAGGCAC 467 |||| ||||||| | || || | || || | || |||| |||||| ||| Sbjct 11760 AAGGTACGCCGTTAGAGTGAGTGC-------GCTCTGCTCCTTCGACTGATTGTTAGCAT 11812 Query 468 ATGGTTTCAGGT--ACTATTTCACTCCCCGCCAGGGGTACTTTTCACCTTTCCCTCACGG 525 | | |||||| ||||| ||||||||| ||||| ||||||||||||||||||||| Sbjct 11813 CGGATCTCAGGTTATCTATTGCACTCCCCGATTGGGGTTCTTTTCACCTTTCCCTCACGG 11872 Query 526 TACTTGTCCGCTATCGGTCACCAAGGAGTATTTAGGCTTAACGGGTGGTCCC 577 ||||||| |||||| ||||| |||| || ||||| ||| |||||||||| Sbjct 11873 TACTTGTACGCTATTGGTCATTGAGGAATACTTAGGTTTAGAGGGTGGTCCC 11924 >seq774 Length=145908 Score = 104 bits (114), Expect = 8e-20 Identities = 281/423 (66%), Gaps = 29/423 (7%) Strand=Plus/Plus Query 152 ATTTCGGGGAGAACCAGCTATCACGAAGTTTGATTGGCCTTTCACCCCTATCCACAGGTC 211 |||||||| ||||||||||| | | | | | ||| ||| | ||||| ||||| || Sbjct 77306 ATTTCGGGAAGAACCAGCTAGCTCTGGGCTCAAGAGGCATTTGATCCCTAACCACAACTC 77365 Query 212 ATCCCCTCAGTTTTCAACCTAAGTGGGTTCGGTCCTCCACGCGGTCTTACCCGCGCTTCA 271 || | | | | |||||| | ||| ||| || ||| | | || | |||| |||||| Sbjct 77366 ATTCATTGATTCTTCAACATCAGTCGGTATGGACCTTCGCTTAGTTTCACCCAAGCTTCA 77425 Query 272 ACCTGCCCATGGATAGATCACTTCGCTTCGGG-TCTTGA-TCGTGCCACTCATACGCCCT 329 ||| |||||||||||||| | | || ||| || | | | ||| || || ||| Sbjct 77426 TGCTGGTCATGGATAGATCACCTAGGTTTGGGTTCATAAGTAGTG----ACAACCGTCCT 77481 Query 330 ATTCGGACTCGCTTTCGCTACGGCTACCCCACACGG----GTTAACCTCGCGACACAACG 385 || |||||||||| ||||||||| ||| || |||||| || | || | Sbjct 77482 ATGGAGACTCGCTTTTGCTACGGCT---CCAGTTGGTTACCTTAACCAAGCCAGCCACTG 77538 Query 386 C---AAACTCGCAGGCTCATTCTTCAAAAGGCACGCCGTCACCTGGTACCTAAAAGGCAC 442 | | ||| | |||||||||||| | | ||| |||| || || ||| Sbjct 77539 CCTATGAGTCGTCGACTCATTCTTCAATA--------GACACATGGT---TAGAAATCAC 77587 Query 443 -TTCAGCTCCGACGGATTGTAGGCACATGGTTTCAGGTACTATTTCACTCCCCGCCAGGG 501 ||| || | | | || | || ||||| | || ||||||||| |||| ||| Sbjct 77588 ATTCTCCTTCCATTGCGTGGGAACTCACGGTTTTATGT-CTATTTCACATCCCGATGGGG 77646 Query 502 GTACTTTTCACCTTTCCCTCACGGTACTTGTCCGCTATCGGTCACCAAGGAGTATTTAGG 561 || |||||||||||||||||| | |||| | |||||| ||| ||| | ||||||||| Sbjct 77647 GTTCTTTTCACCTTTCCCTCATGATACTACTTCGCTATTGGTGACCCCGTAGTATTTAGC 77706 Query 562 CTT 564 ||| Sbjct 77707 CTT 77709 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1817083528960