Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Musa_20itinerans_20[genbank_20GCA_5F001649415.1_202016-05-21] 28,415 sequences; 455,349,267 total letters Query= AAMG01001291.1 Length=420 Score E Sequences producing significant alignments: (Bits) Value seq3787 201 3e-49 seq597 197 3e-48 seq1607 116 9e-24 seq774 96.9 9e-18 >seq3787 Length=16741 Score = 201 bits (222), Expect = 3e-49 Identities = 277/372 (74%), Gaps = 13/372 (3%) Strand=Plus/Minus Query 9 CCACAGGTCATTCCGCTAACTTTTTCAACGGTAGTCGGTTCGGTCCTCCAGTTAGTAGTT 68 ||||| |||| ||||| | || |||||| |||||||||| |||||| ||||| | Sbjct 16700 CCACAACTCAT-CCGCTGA-TTCTTCAACATCAGTCGGTTCGAACCTCCACTTAGTT-TC 16644 Query 69 ACCCAACCTTTCAACCTGCCCATAGGATAGATCGCCCGGTTTTCGGGTCTATTTCCCAGC 128 |||||| ||| || |||| ||| ||||||||| || | || |||||| || | || Sbjct 16643 ACCCAAGCTT-CATCCTGGTCAT-GGATAGATCACCTAGGTT-CGGGTCCATAAGC-AGT 16588 Query 129 GACTAGACGCCCTAGTAAGACTCGCTTTTCGCTACGCCTCCCCTA--TTCGGTTAAGCTT 186 ||| | ||||||| |||||||||||| ||||| | |||| | ||| |||| | Sbjct 16587 GACAAT-CGCCCTATGAAGACTCGCTTT-CGCTATGACTCCGGTGGGTTCCCTTAACCAA 16530 Query 187 TGCCACTGAAAATAAGTCGCTGACCCATTATACAAAAGGTACGCAGTCACCCAACAAAGT 246 ||||||| || |||||| | | |||| | ||| ||| ||||| | | | || | | Sbjct 16529 -GCCACTGCCTATGAGTCGCCGGCTCATTCTTCAACAGGCACGCAATTAGAAATCACATT 16471 Query 247 GGGCTCCCACTGCTTGTACGCATACGGTTTCAGGATCTATTTCACTCCCCTCTCCGGGGT 306 |||||||| ||| || ||||||||| | ||||||||||||||| | ||||| Sbjct 16470 CTCCTCCCACTACTTAGGAGCTCACGGTTTCATGTTCTATTTCACTCCCCGATG-GGGGT 16412 Query 307 TCTTTTCGCCTTTCCCTCACGGTACTAGTTCACTATCGGTCAGTCAGTAGTATTTAGCCT 366 ||||||| ||||||||||||||||||| ||| |||||||||| ||| |||||||||||| Sbjct 16411 TCTTTTCACCTTTCCCTCACGGTACTACTTCGCTATCGGTCACCCAGGAGTATTTAGCCT 16352 Query 367 TGGAGGATGGTC 378 || | | ||||| Sbjct 16351 TGCAAGGTGGTC 16340 >seq597 Length=183504 Score = 197 bits (218), Expect = 3e-48 Identities = 277/373 (74%), Gaps = 13/373 (3%) Strand=Plus/Plus Query 9 CCACAGGTCATTCCGCTAACTTTTTCAACGGTAGTCGGTTCGGTCCTCCAGTTAGTAGTT 68 ||||| |||| ||||| | || |||||| ||||||||||| || ||| ||||| | Sbjct 131901 CCACAACTCAT-CCGCTGA-TTCTTCAACAACAGTCGGTTCGGACCACCACTTAGTT-TC 131957 Query 69 ACCCAACCTTTCAACCTGCCCATAGGATAGATCGCCCGGTTTTCGGGTCTATTTCCCAGC 128 |||||| ||| || |||| ||| ||||||||| ||| | || |||||| || | || Sbjct 131958 ACCCAAGCTT-CATCCTGGTCAT-GGATAGATCACCCAGGTT-CGGGTCCATAAGC-AGT 132013 Query 129 GACTAGACGCCCTAGTAAGACTCGCTTTTCGCTACGCCTCCCCTA--TTCGGTTAAGCTT 186 ||| | ||||||| |||||||||||| ||||||| |||| | ||| |||| | Sbjct 132014 GACAAT-CGCCCTATGAAGACTCGCTTT-CGCTACGGCTCCGGTGGGTTCCCTTAACCAA 132071 Query 187 TGCCACTGAAAATAAGTCGCTGACCCATTATACAAAAGGTACGCAGTCACCCAACAAAGT 246 ||||||| || ||| | ||| |||| | ||| | | || | |||| | || | | Sbjct 132072 -GCCACTGCCTATGAGTTGTCGACTCATTCTTCAACAAGCACACGGTCAGAAATCACATT 132130 Query 247 GGGCTCCCACTGCTTGTACGCATACGGTTTCAGGATCTATTTCACTCCCCTCTCCGGGGT 306 ||||||||||||| || ||||||||| | | |||||||||||| | ||||| Sbjct 132131 CTCCTCCCACTGCTTGGGAGCTCACGGTTTCATGTTTTATTTCACTCCCTAATG-GGGGT 132189 Query 307 TCTTTTCGCCTTTCCCTCACGGTACTAGTTCACTATCGGTCAGTCAGTAGTATTTAGCCT 366 ||||||| ||||||||||||||||||| ||| |||||||||| ||| |||||||||||| Sbjct 132190 TCTTTTCACCTTTCCCTCACGGTACTACTTCGCTATCGGTCACCCAGGAGTATTTAGCCT 132249 Query 367 TGGAGGATGGTCC 379 || | |||||| Sbjct 132250 TGCAATGTGGTCC 132262 >seq1607 Length=65845 Score = 116 bits (128), Expect = 9e-24 Identities = 141/190 (74%), Gaps = 14/190 (7%) Strand=Plus/Plus Query 203 TCGCTGACCCATTATACAAAAGGTACGCAGTCACCCAACAAAGTGGGCTC--------CC 254 |||||||||||| || |||||||||||| || | | |||| |||| | Sbjct 11741 TCGCTGACCCATCATGCAAAAGGTACGCCGTTAG---AGTGAGTGCGCTCTGCTCCTTCG 11797 Query 255 ACTGCTTGTACGCATACGGTTTCAGG--ATCTATTTCACTCCCCTCTCCGGGGTTCTTTT 312 |||| |||| |||| | | ||||| ||||||| |||||||| | ||||||||||| Sbjct 11798 ACTGATTGTTAGCATCGGATCTCAGGTTATCTATTGCACTCCCCGATT-GGGGTTCTTTT 11856 Query 313 CGCCTTTCCCTCACGGTACTAGTTCACTATCGGTCAGTCAGTAGTATTTAGCCTTGGAGG 372 | |||||||||||||||||| || | |||| ||||| | || | || |||| || |||| Sbjct 11857 CACCTTTCCCTCACGGTACTTGTACGCTATTGGTCATTGAGGAATACTTAGGTTTAGAGG 11916 Query 373 ATGGTCCCCC 382 ||||||||| Sbjct 11917 GTGGTCCCCC 11926 >seq774 Length=145908 Score = 96.9 bits (106), Expect = 9e-18 Identities = 245/361 (68%), Gaps = 24/361 (7%) Strand=Plus/Plus Query 29 TTTTTCAACGGTAGTCGGTTCGGTCCTCCAGTTAGTAGTTACCCAACCTTTCAACCTGCC 88 || |||||| ||||||| || ||| | ||||| | |||||| ||| || ||| Sbjct 77375 TTCTTCAACATCAGTCGGTATGGACCTTCGCTTAGTT-TCACCCAAGCTT-CATGCTGGT 77432 Query 89 CATAGGATAGATCGCCCGGTTTTCGGGTC-TATTTCCCAGCGACTAGACGCCCTAGTAAG 147 ||| ||||||||| || | ||| || || || | || ||| | || |||| || Sbjct 77433 CAT-GGATAGATCACCTAGGTTTGGGTTCATAAGT---AGTGACAAC-CGTCCTATGGAG 77487 Query 148 ACTCGCTTTTCGCTACGCCTCCCCTATTCGGTTAAGCTTT---------GCCACTGAAAA 198 |||||||||| |||||| |||| | | ||||| ||| ||||||| | Sbjct 77488 ACTCGCTTTT-GCTACGGCTCC---AGTTGGTTAC-CTTAACCAAGCCAGCCACTGCCTA 77542 Query 199 TAAGTCGCTGACCCATTATACAAAAGGTACGCAGTCACCCAACAAAGTGGGCTCCCACTG 258 | ||||| ||| |||| | ||| || || || | | || | | || ||| || Sbjct 77543 TGAGTCGTCGACTCATTCTTCAATAGACACATGGTTAGAAATCACATTCTCCTTCCATTG 77602 Query 259 CTTGTACGCATACGGTTTCAGGATCTATTTCACTCCCCTCTCCGGGGTTCTTTTCGCCTT 318 | || | ||||||| | | |||||||||| ||| | |||||||||||| |||| Sbjct 77603 CGTGGGAACTCACGGTTTTATG-TCTATTTCACATCCCGATG-GGGGTTCTTTTCACCTT 77660 Query 319 TCCCTCACGGTACTAGTTCACTATCGGTCAGTCAGTAGTATTTAGCCTTGGAGGATGGTC 378 ||||||| | ||||| ||| |||| ||| | | |||||||||||||||| | | | ||| Sbjct 77661 TCCCTCATGATACTACTTCGCTATTGGTGACCCCGTAGTATTTAGCCTTGCAAGGTAGTC 77720 Query 379 C 379 | Sbjct 77721 C 77721 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1241247199360