Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Musa_20itinerans_20[genbank_20GCA_5F001649415.1_202016-05-21] 28,415 sequences; 455,349,267 total letters Query= AAMG01001432.1 Length=344 Score E Sequences producing significant alignments: (Bits) Value seq110 219 8e-55 seq598 181 2e-43 seq3342 159 7e-37 seq9 140 6e-31 seq692 127 4e-27 seq103 127 4e-27 seq729 102 2e-19 >seq110 Length=548158 Score = 219 bits (242), Expect = 8e-55 Identities = 233/305 (76%), Gaps = 18/305 (6%) Strand=Plus/Minus Query 1 GGCGTCGCTGCATCAGGGTTTCCCCCATTGTGCAATATCCCCCACTGCTGCCTCCCGTAG 60 ||| | ||| | ||||| |||| ||||||| | || || ||||||||||||||||||||| Sbjct 540327 GGCATTGCTCCGTCAGGCTTTCGCCCATTGCGGAAAATTCCCCACTGCTGCCTCCCGTAG 540268 Query 61 GAGTCTGGGCCGTGTCTCAGTCCCAATGTGGCCGTTCAACCTCTCAGTCCGGCTACCGAT 120 ||||||||||||||||||||||||| |||||| | ||| |||||| | || ||||| ||| Sbjct 540267 GAGTCTGGGCCGTGTCTCAGTCCCAGTGTGGCTGATCATCCTCTCGGACCAGCTACTGAT 540208 Query 121 CGTCGGCTTGGTGGGCTATTATCTCACCAACTACCTAATCGGCCGCGAGCCCATCTTTCA 180 | ||| |||||| ||||||| ||||||||||| |||||| | ||| ||||| || | Sbjct 540207 CATCGCCTTGGTAAGCTATTACCTCACCAACTAGCTAATCAGACGCAAGCCCCTCCTCGG 540148 Query 181 GC-GATAAATCTTTGGTCAAAGAATGATGCCATCCTCTGACATTATGCGGTATTAGCGTT 239 || ||| || || ||| ||||| | | || | ||||||||| Sbjct 540147 GCGGATTCCTCCTT------------TTGC--TCCTCAGCC--TACGGGGTATTAGCAAC 540104 Query 240 CGTTTCCAAACGTTATTCCACTCTGAAAGGCAGGTTGCTCACGTGTTACTCACCCGTCCG 299 |||||||| ||| |||| ||| || |||||||| || ||| |||||||||||||||| Sbjct 540103 CGTTTCCAGTTGTTGTTCCCCTCCCAAGGGCAGGTT-CTTACGCGTTACTCACCCGTCCG 540045 Query 300 CCACT 304 ||||| Sbjct 540044 CCACT 540040 >seq598 Length=182560 Score = 181 bits (200), Expect = 2e-43 Identities = 145/175 (83%), Gaps = 0/175 (0%) Strand=Plus/Minus Query 1 GGCGTCGCTGCATCAGGGTTTCCCCCATTGTGCAATATCCCCCACTGCTGCCTCCCGTAG 60 ||| | ||| | ||||| |||| ||||||| | || || ||||||| ||||||||||||| Sbjct 136666 GGCATTGCTCCGTCAGGCTTTCGCCCATTGCGAAAAATTCCCCACTCCTGCCTCCCGTAG 136607 Query 61 GAGTCTGGGCCGTGTCTCAGTCCCAATGTGGCCGTTCAACCTCTCAGTCCGGCTACCGAT 120 ||||||||||||||||||||||||| |||||| | ||| |||||| | || |||| ||| Sbjct 136606 GAGTCTGGGCCGTGTCTCAGTCCCAGTGTGGCTGCTCATCCTCTCGGACCAGCTATTGAT 136547 Query 121 CGTCGGCTTGGTGGGCTATTATCTCACCAACTACCTAATCGGCCGCGAGCCCATC 175 | ||| |||||| ||||||| ||||||||||| |||||| | ||| ||||| || Sbjct 136546 CATCGCCTTGGTAAGCTATTACCTCACCAACTAGCTAATCAGTCGCAAGCCCCTC 136492 Score = 181 bits (200), Expect = 2e-43 Identities = 145/175 (83%), Gaps = 0/175 (0%) Strand=Plus/Minus Query 1 GGCGTCGCTGCATCAGGGTTTCCCCCATTGTGCAATATCCCCCACTGCTGCCTCCCGTAG 60 ||| | ||| | ||||| |||| ||||||| | || || ||||||| ||||||||||||| Sbjct 140171 GGCATTGCTCCGTCAGGCTTTCGCCCATTGCGAAAAATTCCCCACTCCTGCCTCCCGTAG 140112 Query 61 GAGTCTGGGCCGTGTCTCAGTCCCAATGTGGCCGTTCAACCTCTCAGTCCGGCTACCGAT 120 ||||||||||||||||||||||||| |||||| | ||| |||||| | || |||| ||| Sbjct 140111 GAGTCTGGGCCGTGTCTCAGTCCCAGTGTGGCTGCTCATCCTCTCGGACCAGCTATTGAT 140052 Query 121 CGTCGGCTTGGTGGGCTATTATCTCACCAACTACCTAATCGGCCGCGAGCCCATC 175 | ||| |||||| ||||||| ||||||||||| |||||| | ||| ||||| || Sbjct 140051 CATCGCCTTGGTAAGCTATTACCTCACCAACTAGCTAATCAGTCGCAAGCCCCTC 139997 >seq3342 Length=21406 Score = 159 bits (176), Expect = 7e-37 Identities = 213/294 (72%), Gaps = 18/294 (6%) Strand=Plus/Plus Query 13 TCAGGGTTTCCCCCATTGTGCAATATCCCCCACTGCTGCCTCCCGTAGGAGTCTGGGCCG 72 ||||| |||| ||||||| | || || ||||||| ||||||||||||| ||||||||| Sbjct 8822 TCAGGCTTTCGCCCATTGCGAAAAATTCCCCACTATTGCCTCCCGTAGGCGTCTGGGCCA 8881 Query 73 TGTCTCAGTCCCAATGTGGCCGTTCAACCTCTCAGTCCGGCTACCGATCGTCGGCTTGGT 132 ||||| |||||| | ||| | ||| |||||| | || |||| |||| ||| |||||| Sbjct 8882 TGTCTTAGTCCCGGTATGGGTGATCATCCTCTCGGACCAACTACTGATCATCGCCTTGGT 8941 Query 133 GGGCTATTATCTCACCAACTACCTAATCGGCCGCGAGCCCATCTTTCAGC-GATAAATCT 191 ||||||| ||||||||||| |||||| ||| ||| | || | || ||| || Sbjct 8942 AAGCTATTACCTCACCAACTAGCTAATCAAACGCAAGCTCCTCCTCAGGCGGATTCCTCC 9001 Query 192 TTGGTCAAAGAATGATGCCATCCTCTGACATTATGCGGTATTAGCGTTCGTTTCCAAACG 251 || ||| ||||| | | || | ||||||||| ||||||||| | Sbjct 9002 TT------------TTGC--TCCTCAGCC--TACGGGGTATTAGCAATCGTTTCCAGTTG 9045 Query 252 TTATTCCACTCTGAAAGGCAGGTTGCTCACGTGTTACTCACCCGTCCGCCACTA 305 || |||| ||| || |||| ||| || | | ||||||||| |||||||||||| Sbjct 9046 TTGTTCCCCTCCCAAGGGCATGTT-CTTATGCGTTACTCACACGTCCGCCACTA 9098 >seq9 Length=1257773 Score = 140 bits (154), Expect = 6e-31 Identities = 118/145 (81%), Gaps = 0/145 (0%) Strand=Plus/Plus Query 13 TCAGGGTTTCCCCCATTGTGCAATATCCCCCACTGCTGCCTCCCGTAGGAGTCTGGGCCG 72 ||||| |||| ||||||| | || || |||||| |||||||||||||||||| ||||||| Sbjct 1249972 TCAGGCTTTCGCCCATTGCGGAAAATTCCCCACCGCTGCCTCCCGTAGGAGTTTGGGCCG 1250031 Query 73 TGTCTCAGTCCCAATGTGGCCGTTCAACCTCTCAGTCCGGCTACCGATCGTCGGCTTGGT 132 ||||||| ||||| |||||| | ||| |||||| | | ||||| | || || |||||| Sbjct 1250032 TGTCTCAATCCCAGTGTGGCTGATCATCCTCTCGGATCAGCTACTGGTCATCACCTTGGT 1250091 Query 133 GGGCTATTATCTCACCAACTACCTA 157 ||||||| |||||||| || ||| Sbjct 1250092 AAGCTATTACCTCACCAAATATCTA 1250116 >seq692 Length=163528 Score = 127 bits (140), Expect = 4e-27 Identities = 120/153 (78%), Gaps = 0/153 (0%) Strand=Plus/Minus Query 7 GCTGCATCAGGGTTTCCCCCATTGTGCAATATCCCCCACTGCTGCCTCCCGTAGGAGTCT 66 |||| ||| || |||| |||||||| ||| || ||||||||| ||| ||||| |||||| Sbjct 8505 GCTGGATCGGGCTTTCGCCCATTGTCCAAGATTCCCCACTGCAGCCCCCCGTGGGAGTCC 8446 Query 67 GGGCCGTGTCTCAGTCCCAATGTGGCCGTTCAACCTCTCAGTCCGGCTACCGATCGTCGG 126 ||||| ||||||||||||| |||||| | ||| || || || |||| ||| | || Sbjct 8445 GGGCCCTGTCTCAGTCCCAGTGTGGCTGATCATCCGAAAAGACCAGCTAAGCATCATTGG 8386 Query 127 CTTGGTGGGCTATTATCTCACCAACTACCTAAT 159 |||||| || ||| || |||||||||||||| Sbjct 8385 CTTGGTTAGCCTTTACCTTACCAACTACCTAAT 8353 Score = 127 bits (140), Expect = 4e-27 Identities = 120/153 (78%), Gaps = 0/153 (0%) Strand=Plus/Minus Query 7 GCTGCATCAGGGTTTCCCCCATTGTGCAATATCCCCCACTGCTGCCTCCCGTAGGAGTCT 66 |||| ||| || |||| |||||||| ||| || ||||||||| ||| ||||| |||||| Sbjct 14426 GCTGGATCGGGCTTTCGCCCATTGTCCAAGATTCCCCACTGCAGCCCCCCGTGGGAGTCC 14367 Query 67 GGGCCGTGTCTCAGTCCCAATGTGGCCGTTCAACCTCTCAGTCCGGCTACCGATCGTCGG 126 ||||| ||||||||||||| |||||| | ||| || || || |||| ||| | || Sbjct 14366 GGGCCCTGTCTCAGTCCCAGTGTGGCTGATCATCCGAAAAGACCAGCTAAGCATCATTGG 14307 Query 127 CTTGGTGGGCTATTATCTCACCAACTACCTAAT 159 |||||| || ||| || |||||||||||||| Sbjct 14306 CTTGGTTAGCCTTTACCTTACCAACTACCTAAT 14274 >seq103 Length=561466 Score = 127 bits (140), Expect = 4e-27 Identities = 100/120 (83%), Gaps = 0/120 (0%) Strand=Plus/Minus Query 34 AATATCCCCCACTGCTGCCTCCCGTAGGAGTCTGGGCCGTGTCTCAGTCCCAATGTGGCC 93 || || | ||||||||||||||||||||||||||||||||||||||||| || |||||| Sbjct 343852 AAAATTCGCCACTGCTGCCTCCCGTAGGAGTCTGGGCCGTGTCTCAGTCTCAGTGTGGCT 343793 Query 94 GTTCAACCTCTCAGTCCGGCTACCGATCGTCGGCTTGGTGGGCTATTATCTCACCAACTA 153 | ||| |||||| | | ||||| |||| ||| |||| ||||||| ||||||||||| Sbjct 343792 GATCATCCTCTCGGATCAGCTACTGATCATCGCTGTGGTAAGCTATTACCTCACCAACTA 343733 >seq729 Length=153937 Score = 102 bits (112), Expect = 2e-19 Identities = 112/148 (76%), Gaps = 1/148 (1%) Strand=Plus/Minus Query 13 TCAGGGTTTCCCCCATTGTGCAATATCCCCCACTGCTGCCTCCCGTAGGAGTCTGGGCCG 72 ||||| |||| || |||| || || | |||||||| ||| |||||||| |||| || Sbjct 102481 TCAGGTTTTCGCCTATTGCAAAAAATTCTCCACTGCTACCTTTAGTAGGAGTTTGGGTCG 102422 Query 73 TGTCTCAGTCCCAATGTGGCCGTTCAACCTCTCAGTCCGGCTACCGATCGTCGGCTTGGT 132 | |||| ||| | ||| | | ||| ||||| || || ||||| |||| ||| || ||| Sbjct 102421 TATCTCGATCCTAGTGTAGTTGATCATCCTCT-AGACCAGCTACTGATCATCGTCTCGGT 102363 Query 133 GGGCTATTATCTCACCAACTACCTAATC 160 ||||||| ||||||||||| |||||| Sbjct 102362 AAGCTATTACCTCACCAACTAGCTAATC 102335 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 998116304640