Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Musa_20itinerans_20[genbank_20GCA_5F001649415.1_202016-05-21] 28,415 sequences; 455,349,267 total letters Query= AAMG01001752.1 Length=400 Score E Sequences producing significant alignments: (Bits) Value seq597 196 1e-47 seq1607 163 7e-38 seq185 120 7e-25 seq294 98.7 2e-18 seq335 91.5 3e-16 >seq597 Length=183504 Score = 196 bits (216), Expect = 1e-47 Identities = 295/409 (72%), Gaps = 18/409 (4%) Strand=Plus/Plus Query 1 CGACTACGCCTGTCGGCCTCGCCTTAGGACCCGACTCACCCAGGGCAGACAAACTTGACC 60 ||||||||||| ||||||| |||||| || ||||||||| | ||| ||| | | Sbjct 131285 CGACTACGCCTTTCGGCCTGATCTTAGGCCCTGACTCACCCTCCGTGGACGAACCTTGCG 131344 Query 61 CTGGAACCCTTGGATAATCGGCGGACGGGATTCCCACCCGTCACA-CGCTACTCATGCCT 119 ||||||||| | | |||| | | |||||| |||| | || |||||| ||| Sbjct 131345 GAGGAACCCTTAGGTTTTCGGGGCATTGGATTCTCACCAATGTTTGCGTTACTCAAGCCG 131404 Query 120 GCATTCTCACT--CGCATCAACTCCACCACACAGTCACCCGGCAGCTTCACCACTGACAC 177 |||||||||| ||| || ||||| || | | ||| ||||| | || | | Sbjct 131405 ACATTCTCACTTCCGCTTCG--TCCAC-ACCTGCTTGCGCGGGTGCTTCGCT-CTAAGGC 131460 Query 178 G--ACGCTCCCCTACCCAACCAC----ACAGGTTGCCACAGCTTCGGCGGATAACTTAAG 231 | ||||||||||||| | || ||| | ||||||||||||| ||| |||| | Sbjct 131461 GGAACGCTCCCCTACCGATGCATTTTTACA---TCCCACAGCTTCGGCAGATCGCTTA-G 131516 Query 232 CCCCGCTACATTATCGGCGCGGAATCACTTGACCAGTGAGCTATTACGCACTCTTTCAAG 291 ||||| | ||| || ||| | || | || ||||||||||||| ||||||||||||| Sbjct 131517 CCCCGTT-CATCTTCAGCGTAAGAGCATTCGATCAGTGAGCTATTATGCACTCTTTCAAG 131575 Query 292 GATGGCTGCTTCCAAGCCAACCTCCTGGTTGTCTACGCAACTCCACATCCTTTCCCACTG 351 | ||||||||| | || |||||| ||| ||||| ||| | | || |||||| ||||| Sbjct 131576 GGTGGCTGCTTTTAGGCAAACCTCTTGGCTGTCTCTGCACCCCTACCTCCTTTATCACTG 131635 Query 352 AGTCACCACTTAGGGGCCTTAGCTGATGATCTGGGCTGTTTCCCTCTCG 400 || || |||||||||||||||| ||||| ||||||||||||||||| Sbjct 131636 AGCGGTCATTTAGGGGCCTTAGCTGGTGATCCGGGCTGTTTCCCTCTCG 131684 >seq1607 Length=65845 Score = 163 bits (180), Expect = 7e-38 Identities = 152/192 (79%), Gaps = 6/192 (3%) Strand=Plus/Plus Query 212 GCTTCGGCGGATAACTTAAGCCCCGCTACATTATCGGCGC---GGAATCACTTGACCAGT 268 ||||||| | || |||| ||||| | ||||| |||| || ||| || ||||||| Sbjct 11174 GCTTCGGTGAATCACTTGAGCCCTGAGACATTTTCGGTGCTATGGAG---CTAGACCAGT 11230 Query 269 GAGCTATTACGCACTCTTTCAAGGATGGCTGCTTCCAAGCCAACCTCCTGGTTGTCTACG 328 |||||||||||| |||| ||||||||||||||||||||| |||||||||||||| || Sbjct 11231 GAGCTATTACGCTTTCTTCAAAGGATGGCTGCTTCCAAGCCCACCTCCTGGTTGTCATCG 11290 Query 329 CAACTCCACATCCTTTCCCACTGAGTCACCACTTAGGGGCCTTAGCTGATGATCTGGGCT 388 | ||| |||||| ||||| ||| | ||||||| ||||||| | |||||||||| Sbjct 11291 CTCGATCACTTCCTTTTCCACTAAGTGATTGCTTAGGGACCTTAGCGTACGATCTGGGCT 11350 Query 389 GTTTCCCTCTCG 400 |||||||||||| Sbjct 11351 GTTTCCCTCTCG 11362 >seq185 Length=418228 Score = 120 bits (132), Expect = 7e-25 Identities = 105/131 (80%), Gaps = 0/131 (0%) Strand=Plus/Plus Query 270 AGCTATTACGCACTCTTTCAAGGATGGCTGCTTCCAAGCCAACCTCCTGGTTGTCTACGC 329 ||||||||||||||||||||||| ||| |||||| | || || || |||| ||||| | Sbjct 319979 AGCTATTACGCACTCTTTCAAGGGTGGTTGCTTCTAGGCAAATCTTCTGGCTGTCTCTGT 320038 Query 330 AACTCCACATCCTTTCCCACTGAGTCACCACTTAGGGGCCTTAGCTGATGATCTGGGCTG 389 | | | || |||||| ||||||| || ||||||||||||| || ||||| |||||| Sbjct 320039 ATCCCTACCTCCTTTATCACTGAGCAGTCATTTAGGGGCCTTAGTTGGTGATCCGGGCTG 320098 Query 390 TTTCCCTCTCG 400 ||||||| ||| Sbjct 320099 TTTCCCTATCG 320109 >seq294 Length=321605 Score = 98.7 bits (108), Expect = 2e-18 Identities = 107/142 (75%), Gaps = 0/142 (0%) Strand=Plus/Minus Query 257 CACTTGACCAGTGAGCTATTACGCACTCTTTCAAGGATGGCTGCTTCCAAGCCAACCTCC 316 |||| || ||||||||||||||||||||||||| ||| | |||| | | ||||||| Sbjct 167081 CACTCGATTAGTGAGCTATTACGCACTCTTTCAAAAGTGGTTACTTCTAGACAAACCTCC 167022 Query 317 TGGTTGTCTACGCAACTCCACATCCTTTCCCACTGAGTCACCACTTAGGGGCCTTAGCTG 376 ||| ||||| ||| | | || || ||| |||||| | || ||| ||||||||||| Sbjct 167021 TGGCTGTCTTGGCACCCCTACCTCATTTATAGCTGAGTGATCATTTAAAGGCCTTAGCTG 166962 Query 377 ATGATCTGGGCTGTTTCCCTCT 398 ||||| | | ||||||||| Sbjct 166961 GTGATCCAAGTTATTTCCCTCT 166940 >seq335 Length=297142 Score = 91.5 bits (100), Expect = 3e-16 Identities = 100/132 (76%), Gaps = 1/132 (1%) Strand=Plus/Plus Query 270 AGCTATTACGCACTCTTTCAAGGATGGCTGCTTCCAAGCCAACCTCCTGGTTGTCTACGC 329 |||||||| ||||||||||||| | | | |||| | || |||||||||||| ||| | Sbjct 121458 AGCTATTATGCACTCTTTCAAGACTAGTTACTTCTAGGCAAACCTCCTGGTTATCTTTGT 121517 Query 330 AACTCCA-CATCCTTTCCCACTGAGTCACCACTTAGGGGCCTTAGCTGATGATCTGGGCT 388 | | | | | ||| |||||| | || ||||||||||||||| ||||| ||| | Sbjct 121518 ACTACTATCTTTTTTTATTACTGAGAGATCATTTAGGGGCCTTAGCTAGTGATCCGGGTT 121577 Query 389 GTTTCCCTCTCG 400 |||||||||||| Sbjct 121578 GTTTCCCTCTCG 121589 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1177265384960