Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Musa_20itinerans_20[genbank_20GCA_5F001649415.1_202016-05-21] 28,415 sequences; 455,349,267 total letters Query= AAMG01001821.1 Length=161 Score E Sequences producing significant alignments: (Bits) Value seq110 131 1e-28 seq838 127 2e-27 seq692 118 9e-25 seq31 91.5 1e-16 >seq110 Length=548158 Score = 131 bits (144), Expect = 1e-28 Identities = 125/160 (78%), Gaps = 0/160 (0%) Strand=Plus/Minus Query 2 CGAGTTGCAGACTACAATCCGGACTACGATACACTTTCTGGGATTAGCTCCCCCTCGCGG 61 |||||||||| || ||||||| ||| | ||| |||| ||||||| ||||||||| Sbjct 541226 CGAGTTGCAGCCTGCAATCCGAACTGAGGACGGGTTTTTGGGGTTAGCTCACCCTCGCGG 541167 Query 62 GTTGGCGGCCCTCTGTATGTACCATTGTATGACGTGTGAAGCCCTACCCATAAGGGCCAT 121 | | ||| |||| ||| |||||||| ||||||| |||| |||||||| ||| Sbjct 541166 GATCGCGACCCTTTGTCCCGGCCATTGTAGCACGTGTGTCGCCCAGGGCATAAGGGGCAT 541107 Query 122 GAGGACTTGACGTCATCCCCACCTTCCTCCGGTTTGTCAC 161 || ||||||||||||||||||||||||||||| || |||| Sbjct 541106 GATGACTTGACGTCATCCCCACCTTCCTCCGGCTTATCAC 541067 >seq838 Length=133837 Score = 127 bits (140), Expect = 2e-27 Identities = 124/160 (78%), Gaps = 0/160 (0%) Strand=Plus/Plus Query 2 CGAGTTGCAGACTACAATCCGGACTACGATACACTTTCTGGGATTAGCTCCCCCTCGCGG 61 |||||||||| |||||||||| ||| | ||| |||| ||||||| ||||||||| Sbjct 51354 CGAGTTGCAGCCTACAATCCGAACTGAGGACGGGTTTTTGGGGTTAGCTCACCCTCGCGG 51413 Query 62 GTTGGCGGCCCTCTGTATGTACCATTGTATGACGTGTGAAGCCCTACCCATAAGGGCCAT 121 | | ||| |||| ||| |||||||| ||||||| |||| |||||||| ||| Sbjct 51414 GATCGCGACCCTTTGTCCCGGCCATTGTAGCACGTGTGTCGCCCAGGGCATAAGGGGCAT 51473 Query 122 GAGGACTTGACGTCATCCCCACCTTCCTCCGGTTTGTCAC 161 || |||||||||||||||||| |||||| ||| || |||| Sbjct 51474 GATGACTTGACGTCATCCCCATCTTCCTTCGGCTTATCAC 51513 >seq692 Length=163528 Score = 118 bits (130), Expect = 9e-25 Identities = 123/160 (77%), Gaps = 1/160 (1%) Strand=Plus/Minus Query 2 CGAGTTGCAGACTACAATCCGGACTACGATACACTTTCTGGGATTAGCTCCCCCTCGCGG 61 ||||||||||| |||||||| ||| | | |||||||| ||| |||| ||| ||| Sbjct 9674 CGAGTTGCAGAGAACAATCCGAACTGAGGCAATCTTTCTGG-ATTCGCTCTGCCTTACGG 9616 Query 62 GTTGGCGGCCCTCTGTATGTACCATTGTATGACGTGTGAAGCCCTACCCATAAGGGCCAT 121 | || ||| |||| | |||||||| ||||||| |||| ||||| |||||||| Sbjct 9615 CCTTGCTTCCCATTGTAATTGCCATTGTAGCACGTGTGTGGCCCAGCCCATGAGGGCCAT 9556 Query 122 GAGGACTTGACGTCATCCCCACCTTCCTCCGGTTTGTCAC 161 | ||||||||||||||||||||||||||| || | |||| Sbjct 9555 GCTGACTTGACGTCATCCCCACCTTCCTCCAGTATTTCAC 9516 Score = 118 bits (130), Expect = 9e-25 Identities = 123/160 (77%), Gaps = 1/160 (1%) Strand=Plus/Minus Query 2 CGAGTTGCAGACTACAATCCGGACTACGATACACTTTCTGGGATTAGCTCCCCCTCGCGG 61 ||||||||||| |||||||| ||| | | |||||||| ||| |||| ||| ||| Sbjct 15595 CGAGTTGCAGAGAACAATCCGAACTGAGGCAATCTTTCTGG-ATTCGCTCTGCCTTACGG 15537 Query 62 GTTGGCGGCCCTCTGTATGTACCATTGTATGACGTGTGAAGCCCTACCCATAAGGGCCAT 121 | || ||| |||| | |||||||| ||||||| |||| ||||| |||||||| Sbjct 15536 CCTTGCTTCCCATTGTAATTGCCATTGTAGCACGTGTGTGGCCCAGCCCATGAGGGCCAT 15477 Query 122 GAGGACTTGACGTCATCCCCACCTTCCTCCGGTTTGTCAC 161 | ||||||||||||||||||||||||||| || | |||| Sbjct 15476 GCTGACTTGACGTCATCCCCACCTTCCTCCAGTATTTCAC 15437 >seq31 Length=871705 Score = 91.5 bits (100), Expect = 1e-16 Identities = 110/150 (73%), Gaps = 0/150 (0%) Strand=Plus/Minus Query 3 GAGTTGCAGACTACAATCCGGACTACGATACACTTTCTGGGATTAGCTCCCCCTCGCGGG 62 ||||||||| || ||||||| ||| | | | |||| |||| | ||||| ||| Sbjct 316786 GAGTTGCAGCCTGCAATCCGAACTGAGGACGGGTCTTTGGGGTTAGTTTACCCTCATGGG 316727 Query 63 TTGGCGGCCCTCTGTATGTACCATTGTATGACGTGTGAAGCCCTACCCATAAGGGCCATG 122 | ||| |||| ||| | ||||||||| | ||||| |||| | |||||||| ||| Sbjct 316726 ATCGCGACCCTTTGTCTCGACCATTGTAGCATGTGTGTCGCCCGAGACATAAGGGGTATG 316667 Query 123 AGGACTTGACGTCATCCCCACCTTCCTCCG 152 | |||||||||||||| | | ||||||||| Sbjct 316666 ATGACTTGACGTCATCTCTATCTTCCTCCG 316637 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 415885487550