Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Musa_20itinerans_20[genbank_20GCA_5F001649415.1_202016-05-21] 28,415 sequences; 455,349,267 total letters Query= AAMG01001844.1 Length=290 Score E Sequences producing significant alignments: (Bits) Value seq838 167 4e-39 seq110 167 4e-39 seq598 154 2e-35 seq692 129 1e-27 >seq838 Length=133837 Score = 167 bits (184), Expect = 4e-39 Identities = 208/285 (73%), Gaps = 0/285 (0%) Strand=Plus/Plus Query 6 GCTTTCGCGCCTCAGCGTCAGTTACTGTCCAGCAATCCGCCTTCGCCACTGGTGTTCCTC 65 ||||||| ||||| |||||| | | |||||| || |||||| |||||||| | Sbjct 51907 GCTTTCGTCTCTCAGTGTCAGTGTCGGCCCAGCAGAGTGCTTTCGCCGTTGGTGTTCTTT 51966 Query 66 CGTATATCTACGCATTTCACCGCTACACACGGAATTCCGATTGCCTCTCCAGCACTCAAG 125 | || |||||||||||||||||| ||| | |||||| |||| || | | |||| || Sbjct 51967 CCGATCTCTACGCATTTCACCGCTCCACCGGAAATTCCCTCTGCCCCTACCGTACTCCAG 52026 Query 126 AAAAACAGTTTCAAATGCAGGCTATGGGTTGAGCCCATAGTTTTCACATCTGACTTGCCT 185 |||||| | || | ||||||||||| | ||| || | |||||| Sbjct 52027 CTTGGTAGTTTCCACCGCCTGTCCAGGGTTGAGCCCTGGGATTTGACGGCGGACTTGAAA 52086 Query 186 TCCCGCCTACACGCCCTTTACACCCAATAAATCCGGATAACGCTTGCCACCTACGTATTA 245 || |||||| | |||||| |||||| | |||||||||||||||| ||| || ||| Sbjct 52087 AGCCACCTACAGACGCTTTACGCCCAATCATTCCGGATAACGCTTGCATCCTCTGTCTTA 52146 Query 246 CCGCGGCTGCTGGCACGTAGTTAGCCGTGGCTTATTCCTCAGGTA 290 |||||||||||||||| ||||||||| ||||||||||||| || Sbjct 52147 CCGCGGCTGCTGGCACAGAGTTAGCCGATGCTTATTCCTCAGATA 52191 >seq110 Length=548158 Score = 167 bits (184), Expect = 4e-39 Identities = 208/285 (73%), Gaps = 0/285 (0%) Strand=Plus/Minus Query 6 GCTTTCGCGCCTCAGCGTCAGTTACTGTCCAGCAATCCGCCTTCGCCACTGGTGTTCCTC 65 ||||||| ||||| |||||| | | |||||| || |||||| |||||||| | Sbjct 540673 GCTTTCGTCTCTCAGTGTCAGTGTCGGCCCAGCAGAGTGCTTTCGCCGTTGGTGTTCTTT 540614 Query 66 CGTATATCTACGCATTTCACCGCTACACACGGAATTCCGATTGCCTCTCCAGCACTCAAG 125 | || |||||||||||||||||| ||| | |||||| |||| || | | |||| || Sbjct 540613 CCGATCTCTACGCATTTCACCGCTCCACCGGAAATTCCCTCTGCCCCTACCGTACTCCAG 540554 Query 126 AAAAACAGTTTCAAATGCAGGCTATGGGTTGAGCCCATAGTTTTCACATCTGACTTGCCT 185 |||||| | || | ||||||||||| | ||| || | |||||| Sbjct 540553 CTTGGTAGTTTCCACCGCCTGTCCAGGGTTGAGCCCTGGGATTTGACGGCGGACTTGAAA 540494 Query 186 TCCCGCCTACACGCCCTTTACACCCAATAAATCCGGATAACGCTTGCCACCTACGTATTA 245 || |||||| | |||||| |||||| | |||||||||||||||| ||| || ||| Sbjct 540493 AGCCACCTACAGACGCTTTACGCCCAATCATTCCGGATAACGCTTGCATCCTCTGTCTTA 540434 Query 246 CCGCGGCTGCTGGCACGTAGTTAGCCGTGGCTTATTCCTCAGGTA 290 |||||||||||||||| ||||||||| ||||||||||||| || Sbjct 540433 CCGCGGCTGCTGGCACAGAGTTAGCCGATGCTTATTCCTCAGATA 540389 >seq598 Length=182560 Score = 154 bits (170), Expect = 2e-35 Identities = 205/285 (72%), Gaps = 0/285 (0%) Strand=Plus/Minus Query 6 GCTTTCGCGCCTCAGCGTCAGTTACTGTCCAGCAATCCGCCTTCGCCACTGGTGTTCCTC 65 ||||||| ||||| |||||| | | |||||| || |||||| |||||||| | Sbjct 140517 GCTTTCGTCTCTCAGTGTCAGTGTCGGCCCAGCAGAGTGCTTTCGCCGTTGGTGTTCTTT 140458 Query 66 CGTATATCTACGCATTTCACCGCTACACACGGAATTCCGATTGCCTCTCCAGCACTCAAG 125 | || |||||||||||||||||| ||| | |||||| |||| || | | |||| || Sbjct 140457 CCGATCTCTACGCATTTCACCGCTCCACCGGAAATTCCCTCTGCCCCTACCGTACTCCAG 140398 Query 126 AAAAACAGTTTCAAATGCAGGCTATGGGTTGAGCCCATAGTTTTCACATCTGACTTGCCT 185 |||||| | || | ||||||||||| | ||| || | || ||| Sbjct 140397 CTTGGTAGTTTCCATCGCCTGTCCAGGGTTGAGCCCTGGGATTTGACGACGGATTTGAAA 140338 Query 186 TCCCGCCTACACGCCCTTTACACCCAATAAATCCGGATAACGCTTGCCACCTACGTATTA 245 || |||||| | | |||| |||||| | |||||||||||||||| ||| || ||| Sbjct 140337 AGCCACCTACAGACGCATTACGCCCAATCATTCCGGATAACGCTTGCATCCTCTGTCTTA 140278 Query 246 CCGCGGCTGCTGGCACGTAGTTAGCCGTGGCTTATTCCTCAGGTA 290 |||||||||||||||| |||||| || ||||||||||||| || Sbjct 140277 CCGCGGCTGCTGGCACAGAGTTAGACGATGCTTATTCCTCAGATA 140233 Score = 140 bits (154), Expect = 5e-31 Identities = 179/247 (72%), Gaps = 0/247 (0%) Strand=Plus/Minus Query 44 GCCTTCGCCACTGGTGTTCCTCCGTATATCTACGCATTTCACCGCTACACACGGAATTCC 103 || |||||| |||||||| | | || |||||||||||||||||| ||| | |||||| Sbjct 136974 GCTTTCGCCGTTGGTGTTCTTTCCGATCTCTACGCATTTCACCGCTCCACCGGAAATTCC 136915 Query 104 GATTGCCTCTCCAGCACTCAAGAAAAACAGTTTCAAATGCAGGCTATGGGTTGAGCCCAT 163 |||| || | | |||| || |||||| | || | ||||||||||| Sbjct 136914 CTCTGCCCCTACCGTACTCCAGCTTGGTAGTTTCCATCGCCTGTCCAGGGTTGAGCCCTG 136855 Query 164 AGTTTTCACATCTGACTTGCCTTCCCGCCTACACGCCCTTTACACCCAATAAATCCGGAT 223 | ||| || | || ||| || |||||| | | |||| |||||| | ||||||| Sbjct 136854 GGATTTGACGACGGATTTGAAAAGCCACCTACAGACGCATTACGCCCAATCATTCCGGAT 136795 Query 224 AACGCTTGCCACCTACGTATTACCGCGGCTGCTGGCACGTAGTTAGCCGTGGCTTATTCC 283 ||||||||| ||| || ||||||||||||||||||| |||||| || ||||||||| Sbjct 136794 AACGCTTGCATCCTCTGTCTTACCGCGGCTGCTGGCACAGAGTTAGACGATGCTTATTCC 136735 Query 284 TCAGGTA 290 |||| || Sbjct 136734 TCAGATA 136728 >seq692 Length=163528 Score = 129 bits (142), Expect = 1e-27 Identities = 206/294 (70%), Gaps = 20/294 (7%) Strand=Plus/Minus Query 1 CCCACGCTTTCGCGCCTCAGCGTCAGTTACTGTCCAGCAATCCGCCTTCGCCACTGGTGT 60 |||| |||||||| ||||||||||||| ||| | | |||||||| ||| | Sbjct 8862 CCCATGCTTTCGCACCTCAGCGTCAGTAGGGACCCAAAGAGCTGCCTTCGCTTTTGGCCT 8803 Query 61 TCCTCCGTATATCTACGCATTTCACCGCTACACACGGAATTCCGATTGCCTCTCCAGCAC 120 |||| |||| ||||||| |||||||| ||||||||| ||| | ||||| ||| Sbjct 8802 TCCTTCGTAGATCTACGGATTTCACCCCTACACACGAAATGAAACTCTCCTCTGTCTCAC 8743 Query 121 TCAAGAAAAACAGTTTCAAATGCAGGCTATGGGTTGAGCCCATAGTTTTCACATCTG--A 178 ||||| || ||||| | ||| || ||| | |||| | || | Sbjct 8742 TCAAGTGAATTGGTTTCGAGAGCA---------TTCCGCCGGT--TTTTGGCGACTTGAA 8694 Query 179 CTTGCC------TTC-CCGCCTACACGCCCTTTACACCCAATAAATCCGGATAACGCTTG 231 ||||| ||| |||||||| ||||||||| || | | | |||| | ||| |||| Sbjct 8693 CTTGCAACCCGATTCACCGCCTACGTGCCCTTTACGCCTAGTCATTCCGAAGAACACTTG 8634 Query 232 CCACCTACGTATTACCGCGGCTGCTGGCACGTAGTTAGCCGTGGCTTATTCCTC 285 || || |||||||||||||||||||||||| ||||||||| ||||| |||||| Sbjct 8633 CCCCCCCCGTATTACCGCGGCTGCTGGCACGGAGTTAGCCGGGGCTTCTTCCTC 8580 Score = 129 bits (142), Expect = 1e-27 Identities = 206/294 (70%), Gaps = 20/294 (7%) Strand=Plus/Minus Query 1 CCCACGCTTTCGCGCCTCAGCGTCAGTTACTGTCCAGCAATCCGCCTTCGCCACTGGTGT 60 |||| |||||||| ||||||||||||| ||| | | |||||||| ||| | Sbjct 14783 CCCATGCTTTCGCACCTCAGCGTCAGTAGGGACCCAAAGAGCTGCCTTCGCTTTTGGCCT 14724 Query 61 TCCTCCGTATATCTACGCATTTCACCGCTACACACGGAATTCCGATTGCCTCTCCAGCAC 120 |||| |||| ||||||| |||||||| ||||||||| ||| | ||||| ||| Sbjct 14723 TCCTTCGTAGATCTACGGATTTCACCCCTACACACGAAATGAAACTCTCCTCTGTCTCAC 14664 Query 121 TCAAGAAAAACAGTTTCAAATGCAGGCTATGGGTTGAGCCCATAGTTTTCACATCTG--A 178 ||||| || ||||| | ||| || ||| | |||| | || | Sbjct 14663 TCAAGTGAATTGGTTTCGAGAGCA---------TTCCGCCGGT--TTTTGGCGACTTGAA 14615 Query 179 CTTGCC------TTC-CCGCCTACACGCCCTTTACACCCAATAAATCCGGATAACGCTTG 231 ||||| ||| |||||||| ||||||||| || | | | |||| | ||| |||| Sbjct 14614 CTTGCAACCCGATTCACCGCCTACGTGCCCTTTACGCCTAGTCATTCCGAAGAACACTTG 14555 Query 232 CCACCTACGTATTACCGCGGCTGCTGGCACGTAGTTAGCCGTGGCTTATTCCTC 285 || || |||||||||||||||||||||||| ||||||||| ||||| |||||| Sbjct 14554 CCCCCCCCGTATTACCGCGGCTGCTGGCACGGAGTTAGCCGGGGCTTCTTCCTC 14501 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 828571855965