Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Musa_20itinerans_20[genbank_20GCA_5F001649415.1_202016-05-21] 28,415 sequences; 455,349,267 total letters Query= AAMG01001962.1 Length=275 Score E Sequences producing significant alignments: (Bits) Value seq1607 194 3e-47 seq1954 163 4e-38 seq952 129 9e-28 >seq1607 Length=65845 Score = 194 bits (214), Expect = 3e-47 Identities = 183/233 (79%), Gaps = 4/233 (2%) Strand=Plus/Plus Query 47 AACTTAGCTTCCCAGCTATGCACTTGGCAGTACAACTGGTGCACCAGAGGTTTGTCCATC 106 ||||||||| ||| || ||| |||||| ||||| ||| ||||| ||||| ||| | Sbjct 9321 AACTTAGCTGCCCGGCGCTGCTATTGGCATAACAACCGGTACACCATAGGTTGACCCAAC 9380 Query 107 CCGGTCCTCTCGTACTAAGGACAGCTCCTCTCAAATTTCCT----ACGCCCACGACGGAT 162 || |||||||||||||| || ||||||| || | ||| || || ||| ||| Sbjct 9381 CCAGTCCTCTCGTACTAGGGTTGGCTCCTCGCAGTTATCCCTTTAACACCAACGGTAGAT 9440 Query 163 AGGGACCGAACTGTCTCGCGACGTTCTGAACCCAGCTCGCGTGCCTCTTTAATGGGCGAA 222 ||| ||||||||||||| ||||||||| |||||| ||| ||| || |||| || |||||| Sbjct 9441 AGGAACCGAACTGTCTCACGACGTTCTAAACCCAACTCACGTACCACTTTGATCGGCGAA 9500 Query 223 CAGCCCAACCCTTGGGACCTACTTCAGCCCCAGGATGAGACGAGCCGACATCG 275 || || |||||||||||||| ||||| |||||||||| || ||| |||||||| Sbjct 9501 CAACCGAACCCTTGGGACCTTCTTCAACCCCAGGATGTGATGAGTCGACATCG 9553 >seq1954 Length=50421 Score = 163 bits (180), Expect = 4e-38 Identities = 176/233 (76%), Gaps = 4/233 (2%) Strand=Plus/Plus Query 47 AACTTAGCTTCCCAGCTATGCACTTGGCAGTACAACTGGTGCACCAGAGGTTTGTCCATC 106 ||||||||||||| | ||| |||||| ||||| ||| ||||| ||||| ||| | Sbjct 45083 AACTTAGCTTCCCGACGCTGCTATTGGCACAACAACCGGTACACCAAAGGTTGACCCAAC 45142 Query 107 CCGGTCCTCTCGTACTAAGGACAGCTCCTCTCAAATTTCCT----ACGCCCACGACGGAT 162 || |||||||||||||| || | ||||| | | ||| || || | | ||| Sbjct 45143 CCAGTCCTCTCGTACTAGGGTTGGATCCTCGTAGTTATCCCTTTAACACCAATGGTAGAT 45202 Query 163 AGGGACCGAACTGTCTCGCGACGTTCTGAACCCAGCTCGCGTGCCTCTTTAATGGGCGAA 222 ||| |||||||| |||| |||| |||| |||||| ||| ||| || |||| || |||||| Sbjct 45203 AGGAACCGAACTATCTCACGACATTCTAAACCCAACTCACGTACCACTTTGATCGGCGAA 45262 Query 223 CAGCCCAACCCTTGGGACCTACTTCAGCCCCAGGATGAGACGAGCCGACATCG 275 || || |||||||||||||| ||||| ||| |||||| || ||| ||||||| Sbjct 45263 CAACCGAACCCTTGGGACCTTCTTCAACCCTAGGATGTGATGAGTTGACATCG 45315 >seq952 Length=118055 Score = 129 bits (142), Expect = 9e-28 Identities = 185/258 (72%), Gaps = 2/258 (1%) Strand=Plus/Plus Query 18 TTAGATGCCTTCAGCTCTTATCCCTTCCAAACTTAGCTTCCCAGC-TATGCACTTGGCAG 76 |||||||| |||| |||| | |||| |||| ||| ||| | | | | |||| Sbjct 58956 TTAGATGCTTTCAATAGTTATTCGCTCCACACTTGGCTATCCAACGTTTACCAAGGGCAC 59015 Query 77 TACAACTGGTGCACCAGAGGTTTGTCCATCCCGGTCCTCTCGTACTAAGGACAGCTCCTC 136 | || || | |||||||||| ||| ||| |||||||||||||| | | | ||||| Sbjct 59016 GATAATTGATACACCAGAGGTGCATCCTTCCTAGTCCTCTCGTACTAGGAAAATATCCTC 59075 Query 137 TCAAAT-TTCCTACGCCCACGACGGATAGGGACCGAACTGTCTCGCGACGTTCTGAACCC 195 |||||| || ||| |||| |||| ||||| |||||||| | | || | ||||| Sbjct 59076 TCAAATACTCTAACGTCCACATTAGATATGGACCAAACTGTCTTACAATATTTTTAACCC 59135 Query 196 AGCTCGCGTGCCTCTTTAATGGGCGAACAGCCCAACCCTTGGGACCTACTTCAGCCCCAG 255 | || ||||| ||||||| |||||||| | |||||||||| | |||| ||| ||||| Sbjct 59136 AATTCATGTGCCACTTTAATAGGCGAACAACTCAACCCTTGGAATATACTACAGTCCCAG 59195 Query 256 GATGAGACGAGCCGACAT 273 | | || ||| |||||| Sbjct 59196 GTGGCGAAGAGTCGACAT 59213 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 780585068940