Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Musa_20itinerans_20[genbank_20GCA_5F001649415.1_202016-05-21] 28,415 sequences; 455,349,267 total letters Query= AAMG01002175.1 Length=414 Score E Sequences producing significant alignments: (Bits) Value seq110 246 7e-63 seq598 223 8e-56 seq3342 206 6e-51 seq692 165 2e-38 seq9 149 2e-33 seq103 136 1e-29 seq729 114 3e-23 seq838 96.9 8e-18 seq204 75.2 3e-11 >seq110 Length=548158 Score = 246 bits (272), Expect = 7e-63 Identities = 286/384 (74%), Gaps = 30/384 (8%) Strand=Plus/Minus Query 5 TTTACAACCCGAAGGCCTTCTTCATACACGCGGCATGGCTGCATCAGGCTTGCGCCCATT 64 || || ||||| |||||||| | | |||||||||| ||| | |||||||| |||||||| Sbjct 540358 TTCACGACCCGTGGGCCTTCTACCTCCACGCGGCATTGCTCCGTCAGGCTTTCGCCCATT 540299 Query 65 GTGCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGT 124 | | || |||||||||||||||||||||||||||||||| |||||||||||| ||||||| Sbjct 540298 GCGGAAAATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGGCCGTGTCTCAGTCCCAGTGT 540239 Query 125 GGCTGGTCATCCTCTCAGACCAGCTAGGGATCGTCGCCTAGGTGGGCCATTACCCCGCCA 184 ||||| |||||||||| ||||||||| |||| |||||| ||| || |||||| | ||| Sbjct 540238 GGCTGATCATCCTCTCGGACCAGCTACTGATCATCGCCTTGGTAAGCTATTACCTCACCA 540179 Query 185 ACTAGCTAATCCCATCTGGGTTCATCCGATAGTGAGAGGCCCGAAGGTCCCCCTCTTTGG 244 ||||||||||| | | | ||| || | || ||| ||| |||| Sbjct 540178 ACTAGCTAATCAGACGCAAGCCCCTCC--------TCGGGCGGA--TTCCTCCT-TTTGC 540130 Query 245 TCTTGCGACGTTATGCGGTATTAGCCACCGTTTCCAGTGGTTATCCCCCTCCATCAGGCA 304 || | | | || | ||||||||| |||||||||||| ||| | ||||||| |||| Sbjct 540129 TCCTCAGCC--TACGGGGTATTAGCAACCGTTTCCAGTTGTTGTTCCCCTCCCAAGGGCA 540072 Query 305 GTTTCCCAGACATTACTCACCCGTCCGCCACTCGTCAGCGAAGCAGCAAGCTGCTTCCTG 364 | ||| | | |||||||||||||||||||| ||| || || |||| Sbjct 540071 GGTTCTTACGCGTTACTCACCCGTCCGCCACT------GGAAACACCA-----CTTC--- 540026 Query 365 TTACCGTTCGACTTGCATGTGTTA 388 |||| |||||||||||||||| Sbjct 540025 ---CCGTCCGACTTGCATGTGTTA 540005 >seq598 Length=182560 Score = 223 bits (246), Expect = 8e-56 Identities = 164/191 (86%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 5 TTTACAACCCGAAGGCCTTCTTCATACACGCGGCATGGCTGCATCAGGCTTGCGCCCATT 64 || |||||||| |||||||| | | |||||||||| ||| | |||||||| |||||||| Sbjct 136697 TTCACAACCCGTGGGCCTTCTACCTCCACGCGGCATTGCTCCGTCAGGCTTTCGCCCATT 136638 Query 65 GTGCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGT 124 | | || |||||||||| ||||||||||||||||||||| |||||||||||| ||||||| Sbjct 136637 GCGAAAAATTCCCCACTCCTGCCTCCCGTAGGAGTCTGGGCCGTGTCTCAGTCCCAGTGT 136578 Query 125 GGCTGGTCATCCTCTCAGACCAGCTAGGGATCGTCGCCTAGGTGGGCCATTACCCCGCCA 184 ||||| |||||||||| ||||||||| |||| |||||| ||| || |||||| | ||| Sbjct 136577 GGCTGCTCATCCTCTCGGACCAGCTATTGATCATCGCCTTGGTAAGCTATTACCTCACCA 136518 Query 185 ACTAGCTAATC 195 ||||||||||| Sbjct 136517 ACTAGCTAATC 136507 Score = 223 bits (246), Expect = 8e-56 Identities = 164/191 (86%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 5 TTTACAACCCGAAGGCCTTCTTCATACACGCGGCATGGCTGCATCAGGCTTGCGCCCATT 64 || |||||||| |||||||| | | |||||||||| ||| | |||||||| |||||||| Sbjct 140202 TTCACAACCCGTGGGCCTTCTACCTCCACGCGGCATTGCTCCGTCAGGCTTTCGCCCATT 140143 Query 65 GTGCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGT 124 | | || |||||||||| ||||||||||||||||||||| |||||||||||| ||||||| Sbjct 140142 GCGAAAAATTCCCCACTCCTGCCTCCCGTAGGAGTCTGGGCCGTGTCTCAGTCCCAGTGT 140083 Query 125 GGCTGGTCATCCTCTCAGACCAGCTAGGGATCGTCGCCTAGGTGGGCCATTACCCCGCCA 184 ||||| |||||||||| ||||||||| |||| |||||| ||| || |||||| | ||| Sbjct 140082 GGCTGCTCATCCTCTCGGACCAGCTATTGATCATCGCCTTGGTAAGCTATTACCTCACCA 140023 Query 185 ACTAGCTAATC 195 ||||||||||| Sbjct 140022 ACTAGCTAATC 140012 >seq3342 Length=21406 Score = 206 bits (228), Expect = 6e-51 Identities = 290/404 (72%), Gaps = 30/404 (7%) Strand=Plus/Plus Query 11 ACCCGAAGGCCTTCTTCATACACGCGGCATGGCTGCATCAGGCTTGCGCCCATTGTGCAA 70 ||||| |||||||| | | |||||| ||| ||| |||||||| ||||||||| | || Sbjct 8785 ACCCGTGGGCCTTCTACCTCCACGCGACATTGCTCTGTCAGGCTTTCGCCCATTGCGAAA 8844 Query 71 TATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGTGGCTGG 130 |||||||||| ||||||||||||| |||||| || ||||| ||| || || ||| || Sbjct 8845 AATTCCCCACTATTGCCTCCCGTAGGCGTCTGGGCCATGTCTTAGTCCCGGTATGGGTGA 8904 Query 131 TCATCCTCTCAGACCAGCTAGGGATCGTCGCCTAGGTGGGCCATTACCCCGCCAACTAGC 190 |||||||||| ||||| ||| |||| |||||| ||| || |||||| | ||||||||| Sbjct 8905 TCATCCTCTCGGACCAACTACTGATCATCGCCTTGGTAAGCTATTACCTCACCAACTAGC 8964 Query 191 TAATCCCATCTGGGTTCATCCGATAGTGAGAGGCCCGAAGGTCCCCCTCTTTGGTCTTGC 250 ||||| | | || ||| | | | | || ||| ||| |||| || | Sbjct 8965 TAATCAAACGCAAGCTCCTCC-----TCA---GGCGGA--TTCCTCCT-TTTGCTCCTCA 9013 Query 251 GACGTTATGCGGTATTAGCCACCGTTTCCAGTGGTTATCCCCCTCCATCAGGCAGTTTCC 310 | | || | ||||||||| | |||||||||| ||| | ||||||| |||| ||| Sbjct 9014 GCC--TACGGGGTATTAGCAATCGTTTCCAGTTGTTGTTCCCCTCCCAAGGGCATGTTCT 9071 Query 311 CAGACATTACTCACCCGTCCGCCACTCGTCAGCGAAGCAGCAAGCTGCTTCCTGTTACCG 370 | | |||||||| ||||||||||| ||| || || |||| ||| Sbjct 9072 TATGCGTTACTCACACGTCCGCCACT------AGAAACACCA-----CTTC------CCG 9114 Query 371 TTCGACTTGCATGTGTTAGGCCTGCCGCCAGCGTTCAATCTGAG 414 | ||||||||||||||| || ||||||||| ||||| ||||| Sbjct 9115 TCTGACTTGCATGTGTTAAGCATGCCGCCAGTGTTCATCCTGAG 9158 >seq692 Length=163528 Score = 165 bits (182), Expect = 2e-38 Identities = 153/193 (79%), Gaps = 2/193 (1%) Strand=Plus/Minus Query 4 CTTTACAACCCGAA--GGCCTTCTTCATACACGCGGCATGGCTGCATCAGGCTTGCGCCC 61 |||||||| | ||| | ||||||||| |||||| || |||| ||| ||||| ||||| Sbjct 8545 CTTTACAAGCGGAATTGCCCTTCTTCACTCACGCGATATTGCTGGATCGGGCTTTCGCCC 8486 Query 62 ATTGTGCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAG 121 ||||| ||| |||||||||||| ||| ||||| |||||| || || ||||||||| |||| Sbjct 8485 ATTGTCCAAGATTCCCCACTGCAGCCCCCCGTGGGAGTCCGGGCCCTGTCTCAGTCCCAG 8426 Query 122 TGTGGCTGGTCATCCTCTCAGACCAGCTAGGGATCGTCGCCTAGGTGGGCCATTACCCCG 181 |||||||| |||||| |||||||||| | ||| | | || ||| ||| ||||| Sbjct 8425 TGTGGCTGATCATCCGAAAAGACCAGCTAAGCATCATTGGCTTGGTTAGCCTTTACCTTA 8366 Query 182 CCAACTAGCTAAT 194 ||||||| ||||| Sbjct 8365 CCAACTACCTAAT 8353 Score = 165 bits (182), Expect = 2e-38 Identities = 153/193 (79%), Gaps = 2/193 (1%) Strand=Plus/Minus Query 4 CTTTACAACCCGAA--GGCCTTCTTCATACACGCGGCATGGCTGCATCAGGCTTGCGCCC 61 |||||||| | ||| | ||||||||| |||||| || |||| ||| ||||| ||||| Sbjct 14466 CTTTACAAGCGGAATTGCCCTTCTTCACTCACGCGATATTGCTGGATCGGGCTTTCGCCC 14407 Query 62 ATTGTGCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAG 121 ||||| ||| |||||||||||| ||| ||||| |||||| || || ||||||||| |||| Sbjct 14406 ATTGTCCAAGATTCCCCACTGCAGCCCCCCGTGGGAGTCCGGGCCCTGTCTCAGTCCCAG 14347 Query 122 TGTGGCTGGTCATCCTCTCAGACCAGCTAGGGATCGTCGCCTAGGTGGGCCATTACCCCG 181 |||||||| |||||| |||||||||| | ||| | | || ||| ||| ||||| Sbjct 14346 TGTGGCTGATCATCCGAAAAGACCAGCTAAGCATCATTGGCTTGGTTAGCCTTTACCTTA 14287 Query 182 CCAACTAGCTAAT 194 ||||||| ||||| Sbjct 14286 CCAACTACCTAAT 14274 >seq9 Length=1257773 Score = 149 bits (164), Expect = 2e-33 Identities = 120/145 (83%), Gaps = 0/145 (0%) Strand=Plus/Plus Query 48 TCAGGCTTGCGCCCATTGTGCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCG 107 |||||||| ||||||||| | || ||||||||| |||||||||||||||||| ||| ||| Sbjct 1249972 TCAGGCTTTCGCCCATTGCGGAAAATTCCCCACCGCTGCCTCCCGTAGGAGTTTGGGCCG 1250031 Query 108 TGTCTCAGTTCCAGTGTGGCTGGTCATCCTCTCAGACCAGCTAGGGATCGTCGCCTAGGT 167 ||||||| | |||||||||||| |||||||||| || |||||| | || || ||| ||| Sbjct 1250032 TGTCTCAATCCCAGTGTGGCTGATCATCCTCTCGGATCAGCTACTGGTCATCACCTTGGT 1250091 Query 168 GGGCCATTACCCCGCCAACTAGCTA 192 || |||||| | |||| || ||| Sbjct 1250092 AAGCTATTACCTCACCAAATATCTA 1250116 >seq103 Length=561466 Score = 136 bits (150), Expect = 1e-29 Identities = 110/132 (83%), Gaps = 1/132 (1%) Strand=Plus/Minus Query 69 AATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGTGGCT 128 || |||| ||||||||||||||||||||||||||| |||||||||||| |||||||||| Sbjct 343852 AAAATTCGCCACTGCTGCCTCCCGTAGGAGTCTGGGCCGTGTCTCAGTCTCAGTGTGGCT 343793 Query 129 GGTCATCCTCTCAGACCAGCTAGGGATCGTCGCCTAGGTGGGCCATTACCCCGCCAACTA 188 | |||||||||| || |||||| |||| |||| ||| || |||||| | ||||||| Sbjct 343792 GATCATCCTCTCGGATCAGCTACTGATCATCGCTGTGGTAAGCTATTACCTCACCAACTA 343733 Query 189 GCTAATCCCATC 200 || || ||| || Sbjct 343732 GC-AAGCCCCTC 343722 >seq729 Length=153937 Score = 114 bits (126), Expect = 3e-23 Identities = 133/178 (75%), Gaps = 1/178 (1%) Strand=Plus/Minus Query 18 GGCCTTCTTCATACACGCGGCATGGCTGCATCAGGCTTGCGCCCATTGTGCAATATTCCC 77 |||||| | | | ||||| ||| || ||||| || |||| |||| || |||| | Sbjct 102511 GGCCTTTTACCTCTACGCGACATTGCACTGTCAGGTTTTCGCCTATTGCAAAAAATTCTC 102452 Query 78 CACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGTGGCTGGTCATCCT 137 ||||||| ||| |||||||| ||| ||| |||| | | ||||| | || ||||||| Sbjct 102451 CACTGCTACCTTTAGTAGGAGTTTGGGTCGTATCTCGATCCTAGTGTAGTTGATCATCCT 102392 Query 138 CTCAGACCAGCTAGGGATCGTCGCCTAGGTGGGCCATTACCCCGCCAACTAGCTAATC 195 || |||||||||| |||| ||| || ||| || |||||| | |||||||||||||| Sbjct 102391 CT-AGACCAGCTACTGATCATCGTCTCGGTAAGCTATTACCTCACCAACTAGCTAATC 102335 >seq838 Length=133837 Score = 96.9 bits (106), Expect = 8e-18 Identities = 74/88 (84%), Gaps = 0/88 (0%) Strand=Plus/Plus Query 5 TTTACAACCCGAAGGCCTTCTTCATACACGCGGCATGGCTGCATCAGGCTTGCGCCCATT 64 || || ||||| |||||||| | | |||||||||| ||| | |||||||| |||||||| Sbjct 52222 TTCACGACCCGTGGGCCTTCTACCTCCACGCGGCATTGCTCCGTCAGGCTTTCGCCCATT 52281 Query 65 GTGCAATATTCCCCACTGCTGCCTCCCG 92 | | || ||||||||||||||||||||| Sbjct 52282 GCGGAAAATTCCCCACTGCTGCCTCCCG 52309 >seq204 Length=394486 Score = 75.2 bits (82), Expect = 3e-11 Identities = 81/107 (76%), Gaps = 3/107 (3%) Strand=Plus/Plus Query 47 ATCAGGCTTGCGCCCATTGTGCAA---TATTCCCCACTGCTGCCTCCCGTAGGAGTCTGG 103 ||||||||| || |||||| || | || ||||| || | || ||| |||||||| Sbjct 286252 ATCAGGCTTTCGTCCATTGCAAAAAGGTTTTTTCCACTACTACTTCTTGTATGAGTCTGG 286311 Query 104 ACCGTGTCTCAGTTCCAGTGTGGCTGGTCATCCTCTCAGACCAGCTA 150 | | |||||| | |||||||||||| |||| |||||| ||||| || Sbjct 286312 ATTGCGTCTCAATACCAGTGTGGCTGATCATTCTCTCAAACCAGATA 286358 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1222052655040