Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Musa_20itinerans_20[genbank_20GCA_5F001649415.1_202016-05-21] 28,415 sequences; 455,349,267 total letters Query= AAMG01002180.1 Length=500 Score E Sequences producing significant alignments: (Bits) Value seq110 331 3e-88 seq598 300 5e-79 seq692 269 8e-70 seq3342 208 2e-51 seq838 197 4e-48 seq9 163 9e-38 seq103 140 1e-30 seq729 116 1e-23 >seq110 Length=548158 Score = 331 bits (366), Expect = 3e-88 Identities = 280/342 (82%), Gaps = 3/342 (1%) Strand=Plus/Plus Query 161 GCGTCTGATTAGCTAGTTGGTAAGGTAACGGCTTACCAAGGCGACGATCAGTAGCCGACC 220 ||||||||||||||||||||| |||||| |||||||||||||| |||||||||| | | Sbjct 540162 GCGTCTGATTAGCTAGTTGGTGAGGTAATAGCTTACCAAGGCGATGATCAGTAGCTGGTC 540221 Query 221 TGAGAGGGTGATCGGCCACATTGGAACTGAGACACGGTCCAAACTCCTACGGGAGGCAGC 280 |||||| ||||| |||||| ||| |||||||||||| ||| |||||||||||||||||| Sbjct 540222 CGAGAGGATGATCAGCCACACTGGGACTGAGACACGGCCCAGACTCCTACGGGAGGCAGC 540281 Query 281 AGTGGGGAATATTGCACAATGGGCAAAAGCCTGATGCAGCAACGCCGCGTGAGCGATGAA 340 |||||||||| || | |||||||| ||||||||| | ||||| |||||||| | ||| Sbjct 540282 AGTGGGGAATTTTCCGCAATGGGCGAAAGCCTGACGGAGCAATGCCGCGTGGAGGTAGAA 540341 Query 341 GGCCTTCGGGTCGTAAAGCTCTGTCCTCAAGGAAG--ATAATGACGGTACTTGAGGAGGA 398 |||| |||||||| || ||| | ||| |||| | |||||||||| |||||| | Sbjct 540342 GGCCCACGGGTCGTGAACTTCTTTTCTCGGAGAAGAAACAATGACGGTATCTGAGGAATA 540401 Query 399 AGCCCCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGGGCTAGCGTTATCCGG 458 ||| ||||||||| ||||||||||||||||||| || ||| || |||||||||||| Sbjct 540402 AGCATCGGCTAACTCTGTGCCAGCAGCCGCGGTAAGACAGAGGATGCAAGCGTTATCCGG 540461 Query 459 AATTACTGGGGCGTAAAGGGTGCGTAGGTGGTTTCTTAAGTC 500 ||| | | |||||||||| || |||||||| || | ||||| Sbjct 540462 AATGA-TTGGGCGTAAAGCGTCTGTAGGTGGCTTTTCAAGTC 540502 >seq598 Length=182560 Score = 300 bits (332), Expect = 5e-79 Identities = 273/342 (80%), Gaps = 3/342 (1%) Strand=Plus/Plus Query 161 GCGTCTGATTAGCTAGTTGGTAAGGTAACGGCTTACCAAGGCGACGATCAGTAGCCGACC 220 ||| ||||||||||||||||| |||||| |||||||||||||| ||||| |||| | | Sbjct 136501 GCGACTGATTAGCTAGTTGGTGAGGTAATAGCTTACCAAGGCGATGATCAATAGCTGGTC 136560 Query 221 TGAGAGGGTGATCGGCCACATTGGAACTGAGACACGGTCCAAACTCCTACGGGAGGCAGC 280 |||||| ||| | |||||| ||| |||||||||||| ||| ||||||||||||||||| Sbjct 136561 CGAGAGGATGAGCAGCCACACTGGGACTGAGACACGGCCCAGACTCCTACGGGAGGCAGG 136620 Query 281 AGTGGGGAATATTGCACAATGGGCAAAAGCCTGATGCAGCAACGCCGCGTGAGCGATGAA 340 |||||||||| || | |||||||| ||||||||| | ||||| |||||||| | ||| Sbjct 136621 AGTGGGGAATTTTTCGCAATGGGCGAAAGCCTGACGGAGCAATGCCGCGTGGAGGTAGAA 136680 Query 341 GGCCTTCGGGTCGTAAAGCTCTGTCCTCAAGGAAG--ATAATGACGGTACTTGAGGAGGA 398 |||| ||||| || || ||| | ||| | |||| | |||||||||| |||||| | Sbjct 136681 GGCCCACGGGTTGTGAACTTCTTTTCTCGAAGAAGAAACAATGACGGTATCTGAGGAATA 136740 Query 399 AGCCCCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGGGCTAGCGTTATCCGG 458 ||| || |||||| ||||||||||||||||||| || ||| || |||||||||||| Sbjct 136741 AGCATCGTCTAACTCTGTGCCAGCAGCCGCGGTAAGACAGAGGATGCAAGCGTTATCCGG 136800 Query 459 AATTACTGGGGCGTAAAGGGTGCGTAGGTGGTTTCTTAAGTC 500 ||| | | |||||||| | || |||||||| || | || || Sbjct 136801 AATGA-TTGGGCGTAATGCGTCTGTAGGTGGCTTTTCAAATC 136841 Score = 300 bits (332), Expect = 5e-79 Identities = 273/342 (80%), Gaps = 3/342 (1%) Strand=Plus/Plus Query 161 GCGTCTGATTAGCTAGTTGGTAAGGTAACGGCTTACCAAGGCGACGATCAGTAGCCGACC 220 ||| ||||||||||||||||| |||||| |||||||||||||| ||||| |||| | | Sbjct 140006 GCGACTGATTAGCTAGTTGGTGAGGTAATAGCTTACCAAGGCGATGATCAATAGCTGGTC 140065 Query 221 TGAGAGGGTGATCGGCCACATTGGAACTGAGACACGGTCCAAACTCCTACGGGAGGCAGC 280 |||||| ||| | |||||| ||| |||||||||||| ||| ||||||||||||||||| Sbjct 140066 CGAGAGGATGAGCAGCCACACTGGGACTGAGACACGGCCCAGACTCCTACGGGAGGCAGG 140125 Query 281 AGTGGGGAATATTGCACAATGGGCAAAAGCCTGATGCAGCAACGCCGCGTGAGCGATGAA 340 |||||||||| || | |||||||| ||||||||| | ||||| |||||||| | ||| Sbjct 140126 AGTGGGGAATTTTTCGCAATGGGCGAAAGCCTGACGGAGCAATGCCGCGTGGAGGTAGAA 140185 Query 341 GGCCTTCGGGTCGTAAAGCTCTGTCCTCAAGGAAG--ATAATGACGGTACTTGAGGAGGA 398 |||| ||||| || || ||| | ||| | |||| | |||||||||| |||||| | Sbjct 140186 GGCCCACGGGTTGTGAACTTCTTTTCTCGAAGAAGAAACAATGACGGTATCTGAGGAATA 140245 Query 399 AGCCCCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGGGCTAGCGTTATCCGG 458 ||| || |||||| ||||||||||||||||||| || ||| || |||||||||||| Sbjct 140246 AGCATCGTCTAACTCTGTGCCAGCAGCCGCGGTAAGACAGAGGATGCAAGCGTTATCCGG 140305 Query 459 AATTACTGGGGCGTAAAGGGTGCGTAGGTGGTTTCTTAAGTC 500 ||| | | |||||||| | || |||||||| || | || || Sbjct 140306 AATGA-TTGGGCGTAATGCGTCTGTAGGTGGCTTTTCAAATC 140346 >seq692 Length=163528 Score = 269 bits (298), Expect = 8e-70 Identities = 258/327 (79%), Gaps = 5/327 (2%) Strand=Plus/Plus Query 168 ATTAGCTAGTTGGTAAGGTAACGGCTTACCAAGGCGACGATCAGTAGCCGACCTGAGAGG 227 ||||| ||||||||||||||| |||| |||||| | | ||| |||| | || || Sbjct 8353 ATTAGGTAGTTGGTAAGGTAAAGGCTAACCAAGCCAATGATGCTTAGCTGGTCTTTTCGG 8412 Query 228 GTGATCGGCCACATTGGAACTGAGACACGGTCCAAACTCCTACGGGAGGCAGCAGTGGGG 287 ||||| |||||| ||| ||||||||| || || ||||| ||||| ||| ||||||||| Sbjct 8413 ATGATCAGCCACACTGGGACTGAGACAGGGCCCGGACTCCCACGGGGGGCTGCAGTGGGG 8472 Query 288 AATATTGCACAATGGGCAAAAGCCTGATGCAGCAACGCCGCGTGAGCGATGAAGGCC--T 345 ||| ||| ||||||||| |||||| ||| |||||| |||||||| || ||||| | | Sbjct 8473 AATCTTGGACAATGGGCGAAAGCCCGATCCAGCAATATCGCGTGAGTGAAGAAGGGCAAT 8532 Query 346 TCGGGTCGTAAAGCTCTGTCCTCAA--GGAAGATAATGACGGTACTTGAGGAGGAAGCCC 403 || | | |||||||||| || || | | ||| ||||| | ||| ||||| ||||||| Sbjct 8533 TCCGCTTGTAAAGCTCTTTCGTCGAGTGCGCGATCATGACAGGACTCGAGGAAGAAGCCC 8592 Query 404 CGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGGGCTAGCGTTATCCGGAATTA 463 ||||||||| |||||||||||||||||||||||| |||||| || ||| | |||||| | Sbjct 8593 CGGCTAACTCCGTGCCAGCAGCCGCGGTAATACGGGGGGGGCAAGTGTTCTTCGGAATGA 8652 Query 464 CTGGGGCGTAAAGGGTGCGTAGGTGGT 490 || ||||||||||| |||||| ||| Sbjct 8653 CT-AGGCGTAAAGGGCACGTAGGCGGT 8678 Score = 269 bits (298), Expect = 8e-70 Identities = 258/327 (79%), Gaps = 5/327 (2%) Strand=Plus/Plus Query 168 ATTAGCTAGTTGGTAAGGTAACGGCTTACCAAGGCGACGATCAGTAGCCGACCTGAGAGG 227 ||||| ||||||||||||||| |||| |||||| | | ||| |||| | || || Sbjct 14274 ATTAGGTAGTTGGTAAGGTAAAGGCTAACCAAGCCAATGATGCTTAGCTGGTCTTTTCGG 14333 Query 228 GTGATCGGCCACATTGGAACTGAGACACGGTCCAAACTCCTACGGGAGGCAGCAGTGGGG 287 ||||| |||||| ||| ||||||||| || || ||||| ||||| ||| ||||||||| Sbjct 14334 ATGATCAGCCACACTGGGACTGAGACAGGGCCCGGACTCCCACGGGGGGCTGCAGTGGGG 14393 Query 288 AATATTGCACAATGGGCAAAAGCCTGATGCAGCAACGCCGCGTGAGCGATGAAGGCC--T 345 ||| ||| ||||||||| |||||| ||| |||||| |||||||| || ||||| | | Sbjct 14394 AATCTTGGACAATGGGCGAAAGCCCGATCCAGCAATATCGCGTGAGTGAAGAAGGGCAAT 14453 Query 346 TCGGGTCGTAAAGCTCTGTCCTCAA--GGAAGATAATGACGGTACTTGAGGAGGAAGCCC 403 || | | |||||||||| || || | | ||| ||||| | ||| ||||| ||||||| Sbjct 14454 TCCGCTTGTAAAGCTCTTTCGTCGAGTGCGCGATCATGACAGGACTCGAGGAAGAAGCCC 14513 Query 404 CGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGGGCTAGCGTTATCCGGAATTA 463 ||||||||| |||||||||||||||||||||||| |||||| || ||| | |||||| | Sbjct 14514 CGGCTAACTCCGTGCCAGCAGCCGCGGTAATACGGGGGGGGCAAGTGTTCTTCGGAATGA 14573 Query 464 CTGGGGCGTAAAGGGTGCGTAGGTGGT 490 || ||||||||||| |||||| ||| Sbjct 14574 CT-AGGCGTAAAGGGCACGTAGGCGGT 14599 >seq3342 Length=21406 Score = 208 bits (230), Expect = 2e-51 Identities = 211/274 (77%), Gaps = 2/274 (1%) Strand=Plus/Minus Query 161 GCGTCTGATTAGCTAGTTGGTAAGGTAACGGCTTACCAAGGCGACGATCAGTAGCCGACC 220 |||| |||||||||||||||| |||||| |||||||||||||| ||||||||| | | Sbjct 8975 GCGTTTGATTAGCTAGTTGGTGAGGTAATAGCTTACCAAGGCGATGATCAGTAGTTGGTC 8916 Query 221 TGAGAGGGTGATCGGCCACATTGGAACTGAGACACGGTCCAAACTCCTACGGGAGGCAGC 280 |||||| ||||| ||| | || ||| ||||| || ||| || ||||||||||||| Sbjct 8915 CGAGAGGATGATCACCCATACCGGGACTAAGACATGGCCCAGACGCCTACGGGAGGCAAT 8856 Query 281 AGTGGGGAATATTGCACAATGGGCAAAAGCCTGATGCAGCAACGCCGCGTGAGCGATGAA 340 |||||||||| || | |||||||| ||||||||| ||||| | |||||| | ||| Sbjct 8855 AGTGGGGAATTTTTCGCAATGGGCGAAAGCCTGACAGAGCAATGTCGCGTGGAGGTAGAA 8796 Query 341 GGCCTTCGGGTCGTAAAGCTCTGTCCTCAAGGAAG--ATAATGACGGTACTTGAGGAGGA 398 |||| |||||| | || ||| | ||| |||| | ||||| |||| |||||| | Sbjct 8795 GGCCCACGGGTCATGAACTTCTTTTCTCGGAGAAGAAACAATGATGGTATATGAGGAATA 8736 Query 399 AGCCCCGGCTAACTACGTGCCAGCAGCCGCGGTA 432 ||| ||||||| | ||||||| |||||||||| Sbjct 8735 AGCATCGGCTAATTCTGTGCCAGTAGCCGCGGTA 8702 >seq838 Length=133837 Score = 197 bits (218), Expect = 4e-48 Identities = 185/233 (79%), Gaps = 3/233 (1%) Strand=Plus/Minus Query 270 CGGGAGGCAGCAGTGGGGAATATTGCACAATGGGCAAAAGCCTGATGCAGCAACGCCGCG 329 ||||||||||||||||||||| || | |||||||| ||||||||| | ||||| |||||| Sbjct 52309 CGGGAGGCAGCAGTGGGGAATTTTCCGCAATGGGCGAAAGCCTGACGGAGCAATGCCGCG 52250 Query 330 TGAGCGATGAAGGCCTTCGGGTCGTAAAGCTCTGTCCTCAAGGAAG--ATAATGACGGTA 387 || | ||||||| |||||||| || ||| | ||| |||| | |||||||||| Sbjct 52249 TGGAGGTAGAAGGCCCACGGGTCGTGAACTTCTTTTCTCGGAGAAGAAACAATGACGGTA 52190 Query 388 CTTGAGGAGGAAGCCCCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGGGCTA 447 |||||| |||| ||||||||| ||||||||||||||||||| || ||| || | Sbjct 52189 TCTGAGGAATAAGCATCGGCTAACTCTGTGCCAGCAGCCGCGGTAAGACAGAGGATGCAA 52130 Query 448 GCGTTATCCGGAATTACTGGGGCGTAAAGGGTGCGTAGGTGGTTTCTTAAGTC 500 |||||||||||||| | | |||||||||| || |||||||| || | ||||| Sbjct 52129 GCGTTATCCGGAATGA-TTGGGCGTAAAGCGTCTGTAGGTGGCTTTTCAAGTC 52078 >seq9 Length=1257773 Score = 163 bits (180), Expect = 9e-38 Identities = 123/145 (85%), Gaps = 0/145 (0%) Strand=Plus/Minus Query 170 TAGCTAGTTGGTAAGGTAACGGCTTACCAAGGCGACGATCAGTAGCCGACCTGAGAGGGT 229 ||| || ||||| |||||| ||||||||||| || || ||||||| || | |||||| | Sbjct 1250116 TAGATATTTGGTGAGGTAATAGCTTACCAAGGTGATGACCAGTAGCTGATCCGAGAGGAT 1250057 Query 230 GATCGGCCACATTGGAACTGAGACACGGTCCAAACTCCTACGGGAGGCAGCAGTGGGGAA 289 |||| |||||| ||| | |||||||||| |||||||||||||||||||||| |||||||| Sbjct 1250056 GATCAGCCACACTGGGATTGAGACACGGCCCAAACTCCTACGGGAGGCAGCGGTGGGGAA 1249997 Query 290 TATTGCACAATGGGCAAAAGCCTGA 314 | || | |||||||| ||||||||| Sbjct 1249996 TTTTCCGCAATGGGCGAAAGCCTGA 1249972 >seq103 Length=561466 Score = 140 bits (154), Expect = 1e-30 Identities = 104/122 (85%), Gaps = 0/122 (0%) Strand=Plus/Plus Query 172 GCTAGTTGGTAAGGTAACGGCTTACCAAGGCGACGATCAGTAGCCGACCTGAGAGGGTGA 231 |||||||||| |||||| |||||||| |||| |||||||||| || | |||||| ||| Sbjct 343731 GCTAGTTGGTGAGGTAATAGCTTACCACAGCGATGATCAGTAGCTGATCCGAGAGGATGA 343790 Query 232 TCGGCCACATTGGAACTGAGACACGGTCCAAACTCCTACGGGAGGCAGCAGTGGGGAATA 291 || |||||| || |||||||||||| ||| ||||||||||||||||||||||| |||| Sbjct 343791 TCAGCCACACTGAGACTGAGACACGGCCCAGACTCCTACGGGAGGCAGCAGTGGCGAATT 343850 Query 292 TT 293 || Sbjct 343851 TT 343852 >seq729 Length=153937 Score = 116 bits (128), Expect = 1e-23 Identities = 132/176 (75%), Gaps = 1/176 (1%) Strand=Plus/Plus Query 155 AGACCCGCGTCTGATTAGCTAGTTGGTAAGGTAACGGCTTACCAAGGCGACGATCAGTAG 214 |||| || | |||||||||||||||| |||||| ||||||| || ||| ||||||||| Sbjct 102323 AGACTTGCATATGATTAGCTAGTTGGTGAGGTAATAGCTTACCGAGACGATGATCAGTAG 102382 Query 215 CCGACCTGAGAGGGTGATCGGCCACATTGGAACTGAGACACGGTCCAAACTCCTACGGGA 274 | | || ||||| ||||| | ||| | | | |||| ||| |||||||||||| | Sbjct 102383 CTGGTCT-AGAGGATGATCAACTACACTAGGATCGAGATACGACCCAAACTCCTACTAAA 102441 Query 275 GGCAGCAGTGGGGAATATTGCACAATGGGCAAAAGCCTGATGCAGCAACGCCGCGT 330 || |||||||| |||| || |||| ||| ||| ||||| |||| | ||||| Sbjct 102442 GGTAGCAGTGGAGAATTTTTTGCAATAGGCGAAAACCTGACAGTGCAATGTCGCGT 102497 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1497174456960